genome.fa.s4078.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004078.1 Hibiscus syriacus cultivar Beakdansim tig00008924_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  175306

Tables:   1   

This is table  1  of  1  ( 94 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4101--4139	16	2.5	16	91	4	62	53	0	0	46	1.00
6571--6637	34	1.9	34	82	14	84	22	11	17	47	1.80
12317--12362	21	2.2	21	92	3	76	28	10	28	32	1.91
12323--12370	21	2.3	21	88	0	69	29	18	22	29	1.98
13152--13241	31	2.9	31	94	0	153	25	20	18	35	1.95
13524--13565	9	4.8	9	85	5	59	52	2	14	30	1.54
13524--13565	17	2.4	18	84	8	59	52	2	14	30	1.54
19081--19147	34	1.9	34	82	14	84	19	11	20	47	1.81
21167--21248	29	2.8	29	94	1	137	32	14	9	42	1.79
25927--26007	29	2.8	29	94	1	135	33	14	8	43	1.76
36254--36311	17	3.4	17	85	4	62	44	3	3	48	1.36
36283--36323	2	20.5	2	92	0	64	51	0	2	46	1.14
36561--36623	29	2.2	29	88	5	92	30	19	1	49	1.58
47296--47340	16	2.8	15	80	9	54	22	2	4	71	1.15
53885--53928	23	1.9	23	85	0	61	36	13	11	38	1.81
54388--54426	18	2.2	18	85	0	51	23	12	30	33	1.92
58977--59050	22	3.4	22	92	0	130	40	13	10	35	1.80
62905--62967	32	2.0	32	96	0	117	22	19	15	42	1.88
63473--63581	17	6.6	16	78	9	94	3	21	0	75	0.96
63472--63581	25	4.5	24	76	13	89	3	21	0	74	0.97
63490--63581	7	11.6	7	76	19	58	4	20	0	75	0.98
63489--63581	41	2.3	41	92	1	161	4	20	0	75	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63522--63594	15	5.2	15	69	20	59	4	20	0	75	0.97
66994--67073	11	7.0	11	71	23	67	65	3	3	27	1.27
68020--68086	22	3.0	22	91	0	107	0	26	10	62	1.27
68488--68535	3	16.3	3	79	12	55	58	0	0	41	0.98
68477--68536	12	4.9	12	76	9	50	55	0	0	45	0.99
73404--73444	21	2.0	21	85	0	55	31	12	24	31	1.92
76163--76272	31	3.5	31	92	0	175	19	20	22	37	1.94
76968--77005	20	1.9	20	88	0	58	23	26	23	26	2.00
81579--81733	31	5.0	31	88	1	213	20	18	21	40	1.92
82373--82414	21	2.0	21	95	0	75	23	21	28	26	1.99
86525--86549	10	2.5	10	100	0	50	52	20	8	20	1.71
98648--98745	16	6.1	15	75	18	92	2	16	2	79	0.92
98647--98739	12	7.4	12	72	21	59	2	16	2	79	0.93
98629--98738	48	2.2	49	82	12	125	3	18	1	76	1.02
98681--98726	21	2.2	20	92	3	74	2	19	0	78	0.86
98647--98741	20	4.8	19	70	14	68	2	15	2	80	0.91
101366--101490	47	2.8	45	88	7	182	32	20	8	39	1.82
101366--101504	47	3.2	41	80	14	131	31	21	7	38	1.82
105315--105404	14	6.7	14	73	15	75	2	13	2	82	0.86
105339--105405	19	3.6	18	75	18	57	2	13	2	80	0.94
105323--105408	33	2.6	32	87	8	120	2	13	2	81	0.89
105344--105408	22	3.0	21	88	8	78	1	15	1	81	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108024--108148	47	2.8	45	88	7	182	32	20	8	39	1.82
108024--108162	47	3.2	41	80	14	131	31	21	7	38	1.82
110459--110508	25	2.0	25	88	0	73	58	4	8	30	1.45
125601--125656	18	3.1	18	78	0	58	75	3	1	19	1.05
126357--126566	76	2.8	75	92	1	339	59	10	1	27	1.42
126426--126550	44	3.1	43	66	25	119	57	12	1	28	1.45
126388--126507	32	3.4	32	67	24	89	60	11	2	25	1.44
129603--129628	2	13.0	2	100	0	52	50	0	0	50	1.00
137171--137206	19	1.9	19	94	5	65	50	2	0	47	1.15
137208--137247	16	2.5	16	87	0	53	55	2	10	32	1.47
139436--139462	3	9.0	3	100	0	54	66	0	0	33	0.92
146538--146578	22	1.9	22	90	5	66	34	26	24	14	1.94
147666--147699	9	3.8	9	96	0	59	20	2	0	76	0.92
147771--147807	14	2.7	15	84	16	53	27	2	0	70	1.01
148126--148201	35	2.2	35	92	0	125	39	23	1	35	1.63
149128--149190	28	2.3	27	78	8	63	46	1	3	49	1.27
149770--149881	21	5.4	19	71	19	73	16	7	1	74	1.13
149784--149853	8	8.4	8	76	20	54	17	8	0	74	1.06
149780--149818	15	2.5	15	88	12	53	12	15	0	71	1.14
149818--149883	12	5.5	11	75	21	53	19	3	1	75	1.01
149831--149881	4	12.5	4	84	15	61	19	1	1	76	0.98
149823--149881	16	3.6	17	78	15	63	20	1	1	76	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
149814--149881	33	2.1	33	84	15	88	19	2	1	76	0.99
151976--152016	21	2.0	21	85	0	55	46	4	29	19	1.71
154535--154770	64	3.7	64	86	4	341	34	19	12	33	1.90
154985--155143	66	2.4	66	91	0	246	35	25	16	23	1.95
155051--155341	120	2.4	123	86	2	390	34	25	15	25	1.95
157010--157110	28	3.5	29	73	15	75	30	0	4	63	1.22
157090--157138	19	2.6	18	81	9	53	28	2	2	67	1.13
157101--157142	16	2.8	16	89	7	61	30	2	0	66	1.04
157345--157376	2	16.0	2	100	0	64	50	0	0	50	1.00
157421--157498	2	39.0	2	100	0	156	50	0	0	50	1.00
157571--157609	16	2.4	16	95	0	69	10	10	2	76	1.10
157612--157676	18	3.6	18	74	15	62	16	7	0	75	1.03
157595--157694	28	3.5	29	73	14	75	14	9	2	75	1.13
157569--157701	16	7.5	16	71	17	59	15	8	2	74	1.15
163204--163813	251	2.4	260	84	11	785	28	13	18	40	1.88
165015--165159	60	2.5	57	80	6	166	35	13	12	37	1.83
165339--165410	29	2.5	29	84	2	92	20	25	8	45	1.79
165422--165546	43	2.9	42	77	10	119	28	17	6	47	1.72
165421--165886	44	10.4	43	67	19	145	26	20	7	46	1.76
165550--165735	94	2.0	96	91	4	306	24	23	7	44	1.79
165550--165782	95	2.5	94	85	5	283	24	22	7	45	1.77
165550--165769	94	2.3	94	85	6	250	25	21	7	45	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
165694--165886	44	4.4	43	77	5	185	26	21	7	44	1.79
165694--165905	87	2.4	87	79	3	230	25	21	7	44	1.78
166990--167015	13	2.0	13	100	0	52	30	0	0	69	0.89
168331--168515	60	3.1	59	77	9	151	17	12	11	57	1.64
168338--168524	30	6.3	30	73	4	137	16	12	12	58	1.64
170338--170399	32	1.9	32	90	0	97	16	16	11	56	1.67

Tables:   1

The End!