genome.fa.s4079.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004079.1 Hibiscus syriacus cultivar Beakdansim tig00008926_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  117853

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
529--912	86	4.4	89	86	6	543	26	21	15	36	1.93
529--911	177	2.2	174	91	4	601	26	21	15	36	1.93
839--1327	102	4.7	105	86	7	653	24	19	17	38	1.92
1739--1909	54	3.2	54	82	7	197	36	13	11	38	1.81
2285--2343	25	2.4	25	100	0	118	38	15	11	33	1.84
2849--2953	54	1.9	54	90	0	165	27	25	11	35	1.90
5174--5211	20	1.9	20	94	0	67	36	10	31	21	1.87
16110--16312	89	2.3	89	89	3	302	20	25	25	29	1.99
20875--20905	4	7.8	4	92	0	53	25	3	0	70	1.02
22454--22493	3	13.7	3	94	5	73	65	0	0	35	0.93
23436--23503	26	2.7	26	90	2	111	51	7	10	30	1.63
25484--25526	2	21.5	2	100	0	86	51	0	0	48	1.00
25700--25729	15	1.9	16	93	6	53	56	23	13	6	1.60
25796--25865	10	7.2	10	70	23	60	57	20	11	11	1.64
25800--25864	16	4.1	16	91	0	112	56	21	12	9	1.63
26866--26913	10	4.4	10	78	19	51	54	22	12	10	1.68
26853--26907	24	2.3	25	87	9	87	60	16	10	12	1.60
26873--26903	14	2.2	14	94	0	53	54	22	12	9	1.67
26866--26914	24	2.0	24	96	0	89	53	22	14	10	1.71
27106--27162	30	1.9	29	89	3	87	52	8	10	28	1.65
27302--27349	17	2.7	17	84	12	53	33	2	0	64	1.05
29134--29196	15	4.5	15	75	15	62	12	63	15	7	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29135--29192	26	2.2	26	96	0	107	13	62	15	8	1.54
31790--31840	22	2.3	23	90	6	79	33	5	19	41	1.76
37196--37243	24	2.0	24	84	8	62	60	10	2	27	1.41
52000--52033	14	2.3	15	90	5	52	47	0	0	52	1.00
52012--52080	9	7.7	9	73	12	52	46	2	0	50	1.16
52000--52052	20	2.7	20	90	0	79	43	1	0	54	1.11
53193--53235	18	2.4	18	96	0	77	4	25	20	48	1.69
53708--53754	3	15.7	3	100	0	94	31	0	0	68	0.90
54046--54073	14	2.0	14	100	0	56	21	0	14	64	1.29
54862--54908	16	3.0	16	78	12	53	72	2	8	17	1.19
56127--56207	5	16.2	5	85	6	76	70	0	2	27	1.00
56229--56400	32	5.2	31	70	21	84	43	6	4	45	1.50
56279--56551	36	7.7	36	80	14	257	45	6	3	44	1.47
56285--56551	144	1.9	144	84	6	362	45	6	3	44	1.46
56440--56609	32	5.3	32	70	14	109	46	7	2	42	1.47
56523--56613	27	3.1	27	69	15	74	50	7	2	39	1.43
56575--56687	37	3.0	37	73	11	102	45	8	1	44	1.45
56682--56711	2	15.0	2	92	0	51	50	3	0	46	1.18
61117--61213	44	2.2	44	86	0	131	28	18	22	29	1.97
64056--64215	65	2.5	62	79	11	173	31	23	17	27	1.97
70017--70096	24	3.5	24	69	20	73	22	25	22	30	1.99
72381--72425	22	2.0	22	87	8	65	37	4	13	44	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72744--72953	65	3.2	64	78	9	196	30	22	19	27	1.98
74446--74510	22	3.0	22	76	17	55	67	0	6	26	1.13
76157--76216	28	2.2	28	90	3	95	33	11	11	43	1.77
76159--76298	35	4.4	31	78	15	128	35	11	16	37	1.85
76220--76297	34	2.4	34	89	8	119	35	10	20	33	1.86
76371--76427	30	1.9	30	89	7	89	33	10	17	38	1.84
76513--76598	36	2.4	36	86	0	109	41	13	18	25	1.88
76384--76869	101	4.9	102	87	7	639	37	13	18	30	1.90
76718--76791	37	2.0	37	86	0	103	39	10	20	29	1.86
76710--76878	89	1.9	91	92	2	288	37	12	21	28	1.90
76874--77006	36	3.7	36	69	8	108	43	12	15	29	1.82
76863--77096	72	3.2	72	90	1	342	41	13	17	27	1.87
78151--78377	95	2.6	87	76	14	248	31	19	18	29	1.96
78209--78390	95	1.9	95	88	0	274	31	18	17	32	1.94
82562--82611	2	25.0	2	100	0	100	50	0	0	50	1.00
82647--82700	20	2.4	23	82	11	69	70	0	3	25	1.04
85325--85484	83	1.9	82	87	1	230	31	16	19	33	1.94
89717--89780	2	32.0	2	96	0	119	50	1	0	48	1.10
97941--97996	22	2.5	22	97	0	103	28	3	21	46	1.68
104765--104850	42	2.0	42	93	0	145	33	10	12	43	1.77
108180--108229	15	3.3	15	85	0	73	38	26	14	22	1.91
108465--108573	39	2.8	39	87	0	164	30	16	31	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111865--111899	17	2.1	17	100	0	70	51	22	0	25	1.48
116644--116679	9	4.2	8	89	10	54	0	13	2	83	0.76
116644--116686	16	2.6	16	88	3	59	0	16	2	81	0.79

Tables:   1

The End!