genome.fa.s4080.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004080.1 Hibiscus syriacus cultivar Beakdansim tig00008928_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81756

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4471--4519	19	2.7	17	84	9	53	26	20	28	24	1.99
13103--13312	65	3.2	64	81	6	228	26	18	23	30	1.98
19433--19477	19	2.3	20	92	3	74	31	4	4	60	1.37
19431--19484	19	2.9	18	81	10	65	35	5	7	51	1.53
21770--21798	13	2.2	13	100	0	58	51	27	13	6	1.66
22565--22638	12	5.8	13	83	10	57	32	5	44	17	1.71
22565--22620	6	9.3	6	90	7	69	33	5	44	16	1.70
36025--36117	21	4.5	21	75	4	91	39	17	24	18	1.91
36025--36098	20	3.7	20	76	3	85	40	17	22	18	1.91
36025--36117	41	2.3	41	98	0	177	39	17	24	18	1.91
36047--36240	41	4.8	41	78	5	137	35	22	20	22	1.96
36106--36240	20	6.7	20	78	7	112	32	24	17	25	1.97
36408--36451	22	2.0	22	95	0	79	20	45	15	18	1.85
36715--36752	20	1.9	20	88	0	58	13	15	21	50	1.78
36889--36943	25	2.2	24	78	15	58	20	9	18	52	1.71
38071--38115	18	2.5	18	81	0	54	26	40	15	17	1.90
38597--38663	20	3.4	20	81	2	73	38	23	22	14	1.92
38667--38711	18	2.4	18	88	3	63	46	26	17	8	1.78
38729--38786	14	3.9	14	79	16	71	8	17	25	48	1.75
38712--38802	32	2.8	33	94	3	166	10	18	23	47	1.80
38787--38842	20	2.8	19	86	7	76	16	25	23	35	1.94
40713--40748	14	2.6	14	90	0	54	30	0	22	47	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40865--40932	19	3.8	19	85	14	101	47	17	22	13	1.82
40951--40988	20	1.9	20	100	0	76	15	21	26	36	1.93
42023--42076	24	2.2	24	90	0	81	24	16	20	38	1.92
42251--42275	12	2.1	12	100	0	50	72	0	28	0	0.86
44567--44697	19	7.7	19	66	23	94	43	19	22	14	1.87
44568--44700	66	2.0	66	95	0	239	42	19	21	16	1.89
44567--44693	33	3.8	33	87	4	193	43	19	22	14	1.88
44693--44737	20	2.3	20	81	7	58	17	17	20	44	1.87
44874--44910	14	2.6	14	91	0	65	45	24	0	29	1.53
46267--46333	21	3.2	21	68	4	55	19	20	35	23	1.95
46267--46389	42	2.9	41	79	7	113	22	18	36	21	1.95
48394--48578	19	10.1	19	73	14	147	43	21	22	12	1.86
48419--48517	33	3.0	33	86	1	126	38	25	24	12	1.90
48489--48578	39	2.3	38	90	1	135	46	22	20	11	1.81
48574--48640	19	3.5	19	80	10	82	8	17	23	49	1.75
49158--49210	20	2.7	20	93	0	88	26	20	28	24	1.99
49196--49296	21	4.9	21	78	8	100	21	15	21	40	1.91
49240--49293	20	2.7	20	97	0	99	25	16	24	33	1.96
49159--49334	82	2.2	80	79	5	183	22	19	22	35	1.96
49364--49404	21	2.0	21	85	0	55	34	31	17	17	1.93
49411--49456	19	2.3	20	81	7	58	26	17	28	28	1.98
50352--50436	34	2.5	34	98	0	161	60	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50364--50414	25	2.0	25	81	7	59	62	0	0	37	0.95
59995--60045	18	2.8	18	81	3	66	11	15	27	45	1.81
63141--63292	82	1.9	80	87	5	225	53	10	11	23	1.68
66713--66746	2	17.0	2	100	0	68	50	0	0	50	1.00
67206--67283	36	2.2	36	85	0	102	46	14	14	25	1.82
72340--72392	24	2.3	23	78	15	56	39	11	3	45	1.58
75578--75638	23	2.6	24	81	5	70	34	16	4	44	1.69

Tables:   1

The End!