genome.fa.s4081.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004081.1 Hibiscus syriacus cultivar Beakdansim tig00008932_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  181177

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3351--3391	17	2.4	17	91	0	73	43	7	19	29	1.78
4470--4534	24	2.7	24	79	9	78	55	1	0	43	1.09
9662--9751	38	2.4	37	81	7	119	47	0	0	52	1.00
11471--11551	25	3.2	25	80	0	90	11	17	39	32	1.85
14197--14275	29	2.7	29	92	3	124	34	12	22	30	1.92
28123--28170	16	2.9	17	70	17	55	37	10	12	39	1.77
37826--37873	2	24.0	2	100	0	96	50	0	0	50	1.00
37866--37950	34	2.5	34	90	0	125	38	4	0	56	1.20
38745--38843	30	3.3	30	84	0	117	46	2	7	44	1.42
42754--42838	3	28.7	3	97	2	163	67	0	0	32	0.91
43152--43252	50	2.0	50	100	0	202	46	13	21	17	1.83
46603--46629	13	2.1	13	100	0	54	59	0	33	7	1.25
50975--51032	2	29.0	2	91	0	89	44	0	3	51	1.18
51786--51900	59	2.0	58	81	8	135	49	6	4	40	1.47
52405--52433	2	15.0	2	92	7	51	48	0	0	51	1.00
53634--53663	15	1.9	16	93	6	53	16	6	0	76	0.99
53634--53678	15	2.7	17	83	16	51	22	4	0	73	1.01
68368--68401	6	5.7	6	100	0	68	50	17	0	32	1.47
74441--74498	17	3.4	17	81	9	57	46	1	1	50	1.22
76371--76415	2	22.5	2	100	0	90	51	0	0	48	1.00
91345--91372	2	14.0	2	100	0	56	50	0	0	50	1.00
92799--94060	423	3.0	423	97	0	2382	45	15	16	23	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95771--95840	34	2.1	32	84	5	86	24	30	12	32	1.93
96124--96165	21	2.0	21	95	0	75	26	28	21	23	1.99
96270--96328	19	3.1	19	87	2	82	33	10	11	44	1.75
96270--96336	19	3.5	19	80	8	73	34	11	10	43	1.76
96402--96460	29	2.0	31	86	6	86	44	16	3	35	1.65
104337--104440	41	2.8	36	72	16	93	61	3	3	30	1.32
106474--106539	31	2.1	31	88	0	96	42	4	7	45	1.53
111410--111458	19	2.6	19	80	0	62	40	8	14	36	1.75
120237--120697	234	2.0	231	88	4	698	40	18	11	29	1.86
121405--121623	101	2.2	96	83	5	260	31	15	14	38	1.87
121647--121961	108	2.9	108	85	0	425	34	15	10	39	1.82
122654--122715	31	2.0	31	100	0	124	48	3	6	41	1.45
137554--137644	2	51.5	2	71	23	53	57	0	0	42	0.99
137553--137646	9	11.0	8	74	18	57	57	0	0	42	0.98
137551--137634	33	2.5	34	98	1	161	59	0	0	40	0.97
143575--143611	15	2.5	15	90	0	56	8	67	16	8	1.40
145555--145589	18	1.9	18	100	0	70	25	17	11	45	1.81
147734--147794	30	2.0	30	87	0	86	49	11	18	21	1.78
151190--151272	29	2.8	29	92	1	139	43	9	14	32	1.78
155952--156034	29	2.8	29	92	1	139	43	9	14	32	1.78
159765--159790	2	13.0	2	100	0	52	50	0	0	50	1.00
174217--174255	19	2.0	20	85	5	53	46	2	0	51	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
175160--175232	36	2.1	36	82	10	89	47	1	4	46	1.30
175377--175414	20	1.9	20	88	0	58	21	26	10	42	1.85
176591--176706	20	5.7	21	69	7	78	36	30	16	17	1.92
176571--176726	61	2.6	60	91	3	269	39	28	16	16	1.90
176693--176886	20	9.6	20	81	5	221	35	25	19	19	1.95
176573--176887	60	5.2	60	83	3	217	36	26	18	18	1.94
177266--177336	33	2.2	33	89	0	106	11	23	16	47	1.79
177415--177492	41	1.9	41	97	0	147	44	16	25	12	1.83
177416--177491	21	3.7	21	83	3	109	46	17	25	11	1.82
177510--177627	14	7.1	18	67	25	80	10	24	21	44	1.83
177532--177621	14	5.7	14	74	23	81	8	25	23	42	1.83
177515--177629	33	3.5	33	95	0	212	9	24	20	45	1.81
179324--179704	93	4.1	93	98	0	735	22	12	18	45	1.83
179747--179875	19	7.3	19	75	17	125	45	28	17	8	1.77
179783--179875	33	2.8	32	91	4	150	46	27	18	7	1.76
179747--179875	52	2.5	52	74	14	140	45	28	17	8	1.77
179871--180006	19	7.6	19	74	17	121	11	19	23	46	1.81
179893--179949	14	3.7	14	77	20	60	10	21	22	45	1.82
179876--179968	33	2.8	33	95	0	168	10	20	21	47	1.80
179940--180006	20	3.4	20	87	2	91	10	16	26	46	1.79

Tables:   1

The End!