genome.fa.s4082.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004082.1 Hibiscus syriacus cultivar Beakdansim tig00008933_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88983

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6813--6861	3	17.0	3	91	8	84	65	0	0	34	0.93
7081--7128	23	2.1	23	88	0	69	29	22	27	20	1.99
7087--7141	23	2.4	23	81	0	65	30	18	27	23	1.97
15658--15712	18	3.3	18	66	23	57	40	14	20	25	1.90
15652--15712	31	2.0	31	100	0	122	37	16	22	22	1.93
17134--17191	29	1.9	30	93	6	100	36	15	24	24	1.94
22774--22810	14	2.4	16	86	13	51	5	13	35	45	1.66
22762--22815	17	2.9	19	71	20	60	5	14	31	48	1.67
28413--28498	45	1.9	45	92	4	147	26	17	27	27	1.98
28415--28492	19	3.7	19	73	23	68	23	19	28	29	1.98
29292--29339	3	16.0	3	100	0	96	33	0	0	66	0.92
29521--30516	3	338.0	3	83	8	1208	61	0	38	0	0.97
30789--30827	20	2.0	20	85	10	53	46	12	0	41	1.42
36138--36169	13	2.3	15	89	10	50	12	21	0	65	1.25
50104--50135	13	2.3	15	89	10	50	12	21	0	65	1.25
51827--51876	21	2.4	21	83	3	57	40	14	24	22	1.90
52462--52576	44	2.6	44	92	0	185	37	6	19	37	1.76
52723--52791	23	3.0	23	89	2	104	18	26	23	31	1.97
52824--52870	24	2.0	24	87	8	69	19	25	25	29	1.98
54876--54900	11	2.3	11	100	0	50	80	0	0	20	0.72
58579--58609	12	2.7	12	95	5	55	45	0	0	54	0.99
58956--59008	23	2.4	22	81	9	63	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58961--59005	23	2.0	23	86	8	65	42	0	0	57	0.98
64515--64557	22	2.0	21	86	8	61	74	0	0	25	0.82
65982--66012	15	2.1	15	93	0	53	41	3	0	54	1.16
66507--66546	21	1.9	21	89	0	62	32	27	15	25	1.95
67279--67314	14	2.6	14	86	0	54	52	5	5	36	1.48
74604--74678	22	3.6	22	78	14	95	28	30	24	17	1.97
74585--74658	18	3.9	18	75	13	76	28	33	21	16	1.95
74584--74678	40	2.4	40	92	0	154	28	30	23	17	1.97
79772--79909	22	6.9	21	72	16	123	29	31	21	18	1.96
79774--79886	18	5.8	18	71	15	82	30	32	18	17	1.94
79772--79908	40	3.4	40	89	0	211	29	31	20	18	1.96
84077--84115	19	2.1	19	90	0	60	48	17	7	25	1.74
84698--84892	93	2.1	93	92	1	320	39	20	10	29	1.86
84698--84917	93	2.4	92	85	5	230	40	20	10	29	1.85
87149--87236	20	4.4	20	82	0	104	42	18	15	23	1.89
87231--87277	20	2.3	20	88	0	67	29	27	21	21	1.98
88115--88161	24	2.0	24	95	0	85	21	21	21	36	1.96

Tables:   1

The End!