genome.fa.s4083.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004083.1 Hibiscus syriacus cultivar Beakdansim tig00008934_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  163643

Tables:   1   

This is table  1  of  1  ( 84 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56--740	197	3.5	195	80	10	664	29	16	14	39	1.88
3304--3765	200	2.3	199	84	5	596	32	17	13	37	1.88
3510--3962	249	1.8	252	87	4	675	32	17	14	36	1.90
6880--6931	19	2.7	19	96	0	95	53	9	0	36	1.34
8690--8753	33	1.9	33	90	0	101	23	43	0	32	1.54
8787--8851	21	3.1	21	93	0	103	15	30	10	43	1.81
11086--11142	22	2.7	22	91	5	91	22	12	10	54	1.68
11282--11339	20	2.9	19	75	9	62	18	15	12	53	1.72
11101--11541	182	2.4	182	85	4	568	28	15	13	42	1.85
12211--12296	20	4.2	21	77	7	72	37	24	16	22	1.93
12424--12474	22	2.3	22	86	0	66	29	41	7	21	1.81
12730--12772	20	2.2	20	87	4	61	44	23	18	13	1.86
12769--12810	20	2.1	20	86	0	57	14	16	21	47	1.82
16806--16892	39	2.2	39	91	4	140	19	14	18	47	1.83
17200--17236	18	2.1	18	89	0	56	51	10	8	29	1.65
17622--17672	14	3.9	13	75	17	52	43	19	7	29	1.79
17624--17673	25	2.0	25	88	0	73	44	18	8	30	1.78
17808--17877	20	3.5	20	82	0	95	15	18	22	42	1.88
19490--19529	21	1.9	21	84	0	53	55	7	5	32	1.50
20262--20286	12	2.1	12	100	0	50	8	28	0	64	1.22
21144--21189	19	2.4	19	100	0	92	36	8	17	36	1.81
21178--21248	20	3.5	20	92	0	115	19	16	23	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21240--21289	21	2.4	21	86	3	66	40	16	20	24	1.91
24460--24553	25	3.5	27	74	21	74	43	5	0	51	1.24
24491--24551	25	2.4	25	84	13	81	40	4	0	54	1.22
24508--24561	24	2.4	21	82	14	56	37	3	0	59	1.15
24569--24644	30	2.5	30	82	0	89	36	6	0	56	1.25
27155--27225	29	2.4	28	88	4	88	43	9	12	33	1.76
27213--27271	31	1.9	31	96	0	109	20	8	11	59	1.58
27213--27279	31	2.2	31	91	0	107	25	7	11	55	1.62
34416--34786	55	6.7	55	86	3	428	28	23	18	28	1.98
34423--34786	110	3.3	109	87	4	473	29	23	18	28	1.98
34416--34786	165	2.2	165	84	3	480	28	23	18	28	1.98
36153--36194	19	2.2	19	87	8	59	9	11	0	78	0.96
36250--36288	14	2.7	14	84	4	51	7	23	0	69	1.14
36293--36331	9	4.4	9	80	6	53	2	12	0	84	0.72
36264--36332	17	4.0	17	79	3	75	7	15	0	76	0.99
45971--46081	45	2.3	46	83	7	134	41	16	10	31	1.82
56981--57043	32	2.0	32	90	0	99	30	22	28	19	1.98
60806--60841	19	1.9	18	88	5	54	58	5	22	13	1.56
64999--65027	15	1.9	15	100	0	58	20	24	13	41	1.89
65633--65745	35	3.2	35	86	7	158	41	22	0	35	1.60
66771--66882	35	3.2	34	84	2	143	33	0	22	43	1.59
71822--72033	109	1.9	109	100	0	424	20	21	28	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82896--82970	38	2.0	38	94	0	132	30	30	13	25	1.94
86634--86688	24	2.3	24	93	0	92	16	12	12	58	1.64
86637--86689	14	4.1	14	74	18	60	15	13	15	56	1.67
87058--87102	16	2.8	16	93	0	72	13	17	17	51	1.77
87875--87933	31	1.9	31	89	0	91	42	5	10	42	1.60
87958--88000	22	2.0	22	95	0	77	51	11	0	37	1.39
87960--88008	22	2.2	22	85	3	62	55	12	0	32	1.37
87948--88364	54	7.6	54	76	15	426	53	12	0	34	1.38
88012--88080	22	3.0	22	81	10	75	52	14	0	33	1.42
87980--88365	112	3.5	112	82	9	547	53	12	0	33	1.40
88124--88166	22	2.0	22	95	0	77	51	11	0	37	1.39
88126--88174	22	2.2	22	85	3	62	55	12	0	32	1.37
88178--88220	22	2.0	22	100	0	86	51	13	0	34	1.42
88180--88228	22	2.2	22	88	3	71	55	14	0	30	1.40
88060--88376	32	11.0	32	75	20	276	53	11	0	34	1.38
88183--88333	80	1.9	80	97	0	284	52	15	0	31	1.42
87948--88364	220	1.9	220	96	0	780	53	12	0	34	1.38
89098--89200	33	3.1	35	81	8	126	44	12	16	26	1.83
91012--91067	23	2.4	23	81	0	67	21	14	39	25	1.91
91854--91890	11	3.4	11	92	7	58	35	0	0	64	0.94
93346--93379	17	2.0	17	100	0	68	11	29	5	52	1.61
97274--97388	33	3.5	33	87	1	167	33	9	17	40	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97440--97580	35	4.0	35	80	11	153	40	16	18	24	1.90
97440--97542	36	3.0	36	86	8	144	41	15	18	24	1.89
97447--97607	36	4.4	38	82	8	142	39	16	18	24	1.91
100706--100748	21	2.0	21	86	0	59	30	27	25	16	1.97
102087--102304	103	2.1	103	93	0	364	26	12	22	38	1.90
102321--102388	23	3.0	23	91	0	100	20	27	26	25	1.99
105983--106027	22	2.0	22	86	4	63	31	33	24	11	1.90
107317--107529	101	2.1	101	92	3	347	26	12	23	37	1.90
107549--107611	23	2.7	23	85	0	81	17	23	28	30	1.97
111918--111956	7	5.6	7	82	11	53	84	0	0	15	0.62
111918--111947	15	2.0	15	100	0	60	86	0	0	13	0.57
111916--111965	12	4.3	12	78	17	52	78	0	0	22	0.76
122266--122326	30	2.0	30	96	0	113	32	9	34	22	1.87
135183--135214	16	2.0	16	100	0	64	37	0	25	37	1.56
142123--142237	60	1.9	60	87	0	167	39	16	13	30	1.88
146478--146534	19	2.8	21	76	7	64	15	24	33	26	1.95
157306--157343	19	2.0	19	89	0	58	42	0	10	47	1.38
161558--161595	19	2.0	19	89	0	58	44	0	10	44	1.38

Tables:   1

The End!