genome.fa.s4086.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004086.1 Hibiscus syriacus cultivar Beakdansim tig00008940_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81225

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1828--1926	44	2.2	44	96	0	180	46	7	21	25	1.76
3381--3470	39	2.3	39	85	9	123	21	17	10	51	1.74
3414--3885	259	1.8	257	85	6	677	26	19	15	38	1.92
3661--4069	138	3.0	136	84	5	515	25	22	18	33	1.96
4090--4271	36	5.0	36	75	8	172	36	12	18	32	1.88
4078--4271	73	2.7	73	91	2	302	36	11	18	33	1.87
5690--5753	18	3.6	17	82	14	60	0	18	3	78	0.89
6387--6450	27	2.4	27	97	0	119	50	7	10	31	1.66
8958--8999	15	2.9	14	86	6	57	69	0	11	19	1.19
9183--9219	18	2.0	19	89	5	58	56	13	5	24	1.58
10758--11167	138	3.0	138	83	4	538	25	20	18	35	1.95
11183--11377	73	2.6	73	85	4	257	37	11	15	34	1.85
11171--11367	36	5.4	35	71	10	135	39	11	15	33	1.83
12900--12991	11	8.4	10	77	15	78	1	14	4	80	0.92
12898--12991	22	4.3	21	78	17	95	1	14	4	79	0.93
12917--12973	18	3.2	18	90	2	89	0	14	5	80	0.87
12901--12991	18	5.5	17	76	16	68	1	14	4	80	0.93
14412--14683	149	1.8	149	84	1	375	20	23	20	35	1.96
17421--17457	12	3.1	12	92	0	56	45	18	5	29	1.72
21997--22044	22	2.2	22	88	0	69	56	4	6	33	1.44
32482--32586	48	2.2	48	94	0	183	31	22	18	27	1.97
32826--33436	55	11.1	55	89	1	904	34	19	10	35	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36178--36254	30	2.6	30	100	0	154	27	20	16	35	1.95
38777--38827	2	25.5	2	100	0	102	49	0	0	50	1.00
40566--40653	45	1.9	46	86	2	124	23	20	13	42	1.88
40655--40802	48	3.1	49	83	4	194	30	23	15	30	1.95
41047--41544	56	9.0	55	89	2	705	33	19	12	34	1.89
41079--41542	111	4.2	111	90	2	718	33	19	11	34	1.88
50566--50592	2	13.5	2	100	0	54	51	0	0	48	1.00
53268--53335	9	6.6	11	73	21	58	8	29	26	35	1.87
53290--53336	20	2.3	20	92	0	76	8	27	25	38	1.85
57227--57269	21	2.0	21	86	0	59	34	0	16	48	1.46
58006--58051	21	2.2	21	88	0	65	15	28	32	23	1.95
58682--58863	50	3.6	50	83	1	213	47	14	10	26	1.78
58818--58937	60	2.0	58	83	3	150	47	10	13	28	1.76
59474--59516	15	2.9	14	82	10	50	34	0	0	65	0.93
60575--60623	11	4.5	11	87	5	73	18	2	18	61	1.45
60582--60631	11	4.7	11	85	7	68	16	0	22	62	1.33
60584--60631	21	2.3	21	96	0	87	14	0	20	64	1.28
62115--62143	14	2.1	14	100	0	58	20	0	13	65	1.26
62070--62131	11	5.7	11	86	3	90	17	3	19	59	1.51
62339--62385	21	2.1	21	84	7	58	46	0	10	42	1.38
68198--68223	2	13.0	2	100	0	52	50	0	0	50	1.00
73516--73707	89	2.2	87	87	6	287	48	12	12	26	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78294--78334	10	4.1	10	83	0	55	29	29	0	41	1.56
78374--78414	18	2.3	18	91	4	66	29	4	2	63	1.28
80707--80779	30	2.4	29	78	15	78	27	6	10	54	1.60

Tables:   1

The End!