genome.fa.s4087.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004087.1 Hibiscus syriacus cultivar Beakdansim tig00008942_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  105519

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6635--6691	25	2.2	27	78	12	66	49	3	5	42	1.42
7289--7319	12	2.6	12	94	0	53	12	22	45	19	1.84
14039--14076	20	1.9	20	88	0	58	34	2	0	63	1.09
14097--14157	31	1.9	32	83	6	79	49	1	13	36	1.52
21146--21194	6	8.0	6	89	10	73	18	18	30	32	1.95
22030--22148	21	5.8	20	80	8	114	36	22	18	21	1.95
22025--22148	42	3.0	41	72	12	126	35	23	17	23	1.95
22030--22207	20	8.7	20	78	10	92	35	25	18	20	1.95
22115--22308	60	3.2	60	85	0	262	35	26	19	18	1.95
22115--22308	20	9.6	20	82	5	230	35	26	19	18	1.95
22689--22759	33	2.2	33	89	0	106	11	23	16	47	1.79
22839--22944	21	5.6	20	70	16	91	45	18	25	10	1.81
22837--22915	21	3.8	21	79	12	92	45	16	26	11	1.81
22832--22948	41	3.1	38	79	14	136	46	17	26	10	1.80
22902--22955	14	3.5	14	73	22	54	42	24	25	7	1.80
22891--22960	33	2.1	33	97	0	131	47	20	25	7	1.75
22966--23083	14	7.1	18	67	25	80	10	24	21	44	1.83
22988--23077	14	5.7	14	74	23	81	8	25	23	42	1.83
22971--23085	33	3.5	33	95	0	212	9	24	20	45	1.81
24780--25251	93	5.1	93	98	1	912	22	12	19	45	1.83
25295--25371	19	4.3	19	76	17	83	45	29	15	9	1.77
25367--25501	19	7.6	19	75	16	128	11	19	23	45	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25389--25445	14	3.7	14	77	20	60	10	21	22	45	1.82
25372--25464	33	2.8	33	95	0	168	10	20	21	47	1.80
27424--27459	14	2.6	14	95	0	63	33	0	22	44	1.53
27564--27663	19	5.5	19	84	12	147	45	17	23	15	1.85
27564--27680	53	2.2	53	95	1	209	43	17	24	14	1.86
27670--27818	19	8.6	19	73	21	139	15	22	18	43	1.87
27670--27786	52	2.2	52	95	0	207	16	21	17	44	1.87
27727--27818	33	2.8	33	98	1	175	13	23	18	44	1.85
27746--27800	14	3.6	14	73	21	56	10	23	20	45	1.82
27877--27974	19	5.4	19	82	13	125	46	18	21	13	1.82
27877--27993	53	2.2	53	95	1	209	45	18	23	12	1.84
30309--30333	12	2.1	12	100	0	50	0	28	0	72	0.86
30508--30554	24	2.0	24	87	8	69	38	21	14	25	1.92
31236--31485	20	12.5	20	87	1	259	19	18	24	37	1.94
31472--31554	21	4.0	21	73	6	78	25	16	24	33	1.96
31452--31550	42	2.4	43	77	11	100	21	18	23	37	1.94
37496--37715	114	1.9	114	91	1	361	35	18	10	35	1.85
38839--38894	15	3.6	15	79	9	67	42	12	12	32	1.80
38842--38892	17	3.1	17	77	11	61	43	11	9	35	1.75
39289--39343	13	4.2	13	75	13	58	49	12	3	34	1.59
39329--39427	33	3.0	33	94	1	164	45	15	7	32	1.73
39422--39461	21	1.9	21	94	0	71	47	7	15	30	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42446--42503	29	2.0	29	96	0	107	39	27	13	18	1.89
54067--55210	295	3.9	295	97	0	2118	35	13	16	33	1.89
54067--55210	589	1.9	588	96	1	2114	35	13	16	33	1.89
57391--57423	11	3.0	11	86	13	50	36	0	0	63	0.95
60677--60733	25	2.3	25	79	11	64	26	8	12	52	1.67
63520--63567	14	3.5	13	77	8	51	47	2	0	50	1.12
75736--75811	37	2.1	36	82	7	91	47	7	9	35	1.65
79758--79805	18	2.6	18	80	6	51	58	0	4	37	1.18
81178--81534	181	2.0	180	94	0	633	33	13	18	34	1.90
85282--85358	2	39.0	2	97	2	147	50	0	0	49	1.00
91355--91396	21	2.0	21	95	0	75	30	14	7	47	1.71
91391--91483	33	2.8	33	95	1	161	32	6	16	45	1.72
91658--91710	15	3.4	15	75	10	52	35	9	9	45	1.69
91677--91710	18	1.9	18	94	5	61	38	11	11	38	1.79
91804--91835	16	2.0	17	88	11	50	43	21	21	12	1.86
96291--96333	22	2.0	22	95	0	77	39	11	4	44	1.62

Tables:   1

The End!