genome.fa.s4088.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004088.1 Hibiscus syriacus cultivar Beakdansim tig00008944_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70801

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1249--1299	19	2.6	20	93	3	86	45	5	13	35	1.68
4669--5240	81	7.2	81	85	5	707	29	20	11	38	1.88
4701--5260	235	2.3	237	84	4	716	29	20	11	38	1.88
5210--5464	68	3.8	67	88	3	359	27	25	13	33	1.93
5210--5464	135	1.9	136	87	2	379	27	25	13	33	1.93
9656--9720	31	2.1	31	91	0	103	30	27	18	23	1.97
12559--13165	81	7.5	81	85	3	749	29	20	12	38	1.88
12602--13141	160	3.3	160	87	2	744	28	20	12	38	1.88
13111--13441	68	4.9	68	90	0	493	27	25	14	32	1.95
14192--14247	22	2.5	22	100	0	112	37	17	10	33	1.85
18594--18705	24	4.7	24	80	2	73	41	18	14	25	1.88
18611--18685	24	3.2	23	84	5	105	36	20	18	25	1.95
20273--20309	17	2.1	18	90	5	58	35	13	5	45	1.66
26704--26783	35	2.4	33	81	8	90	46	20	0	33	1.51
26959--27243	148	2.0	144	89	3	437	36	5	9	48	1.60
27749--27827	35	2.3	35	88	0	113	30	2	25	41	1.68
33900--34091	104	1.9	102	89	4	296	21	10	20	46	1.81
37578--37640	26	2.4	26	97	0	117	36	28	15	19	1.92
38479--38554	31	2.4	31	80	2	89	26	31	27	14	1.95
38432--38554	63	2.0	63	82	6	151	25	29	28	17	1.97
40065--40099	18	1.9	18	88	0	52	28	17	0	54	1.43
42351--42454	23	4.5	23	96	0	172	24	24	25	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42372--42454	11	7.3	11	75	22	82	22	25	25	26	2.00
42379--42445	12	5.8	12	78	19	79	20	26	23	28	1.99
43590--43643	21	2.6	21	79	2	56	24	0	27	48	1.52
43624--43671	14	3.4	14	86	11	55	27	0	31	41	1.56
46678--46732	19	2.8	20	78	15	69	34	5	25	34	1.79
46689--46730	19	2.2	19	95	0	75	38	4	26	30	1.77
46774--46896	65	1.9	64	91	1	201	38	9	20	31	1.85
47047--47085	17	2.2	17	90	4	60	0	23	61	15	1.33
47059--47150	6	15.3	6	86	0	121	0	29	63	7	1.22
47059--47150	30	3.1	30	98	0	175	0	29	63	7	1.22
47319--47343	2	12.5	2	100	0	50	52	0	0	48	1.00
52574--52930	176	2.0	180	94	5	638	35	10	5	48	1.60
52855--52893	20	2.0	20	84	0	51	35	12	5	46	1.65
54636--54741	24	4.4	23	72	7	86	54	15	11	18	1.70
54636--54741	48	2.2	48	81	3	115	54	15	11	18	1.70
54636--54744	36	3.0	35	71	17	89	55	14	11	19	1.69
57195--57229	18	1.9	18	88	0	52	11	20	45	22	1.82
59264--59355	24	3.8	24	80	0	112	52	18	10	18	1.74
59264--59367	24	4.3	24	80	2	84	51	18	10	19	1.74
61794--61846	23	2.4	22	79	17	56	58	0	1	39	1.09
61813--61847	15	2.4	15	95	4	63	60	0	0	40	0.97
62037--62337	134	2.3	133	78	8	316	29	15	26	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63442--63525	32	2.6	33	81	7	93	32	25	15	27	1.95
64617--64651	16	2.2	16	94	0	61	2	5	0	91	0.50
64617--64708	17	5.3	16	80	12	85	4	10	3	81	0.95
64617--64706	18	5.1	17	75	12	74	4	10	3	82	0.93
64621--64670	11	4.6	11	82	7	50	4	4	4	88	0.72
64618--64704	20	4.5	21	82	10	73	4	10	3	81	0.95

Tables:   1

The End!