genome.fa.s4089.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004089.1 Hibiscus syriacus cultivar Beakdansim tig00008945_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  104426

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9898--9942	22	2.0	22	86	0	63	48	11	2	37	1.51
16403--16430	2	14.0	2	100	0	56	0	50	0	50	1.00
22988--23105	39	3.2	37	74	10	114	32	18	13	35	1.90
23159--23356	67	3.0	65	91	4	315	28	19	13	38	1.89
23236--23275	21	1.9	21	84	0	53	25	20	12	42	1.86
23358--23712	132	2.7	130	80	5	383	26	30	18	24	1.98
23358--23725	134	2.8	131	76	9	354	26	29	18	25	1.98
23905--23953	3	16.3	3	83	8	64	30	4	0	65	1.11
23904--23965	12	5.5	11	84	7	54	32	3	0	64	1.09
26561--26628	31	2.2	31	84	7	93	23	17	17	41	1.90
26577--26864	152	1.9	152	84	4	384	32	15	16	34	1.91
28813--28930	29	4.0	29	95	1	200	42	10	11	36	1.74
33529--33611	29	2.8	29	92	1	139	43	9	14	32	1.78
35339--35527	36	5.3	37	88	6	291	30	23	28	17	1.97
35339--35528	71	2.7	70	91	4	299	30	23	28	17	1.97
37255--37303	24	2.0	24	84	7	64	71	2	2	24	1.07
37350--37394	19	2.4	18	82	17	56	60	0	2	37	1.09
37854--37953	35	2.8	36	86	6	130	31	16	15	38	1.89
38414--38915	106	4.9	102	80	6	539	22	21	23	32	1.98
38738--39075	160	2.1	160	93	0	586	21	21	24	32	1.98
39577--39742	65	2.6	65	94	0	296	36	12	19	31	1.89
39642--39878	102	2.3	102	94	0	411	37	12	20	29	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39707--39913	37	5.9	37	72	15	195	37	13	22	27	1.91
39809--39913	36	2.9	36	92	1	165	38	13	23	24	1.91
40783--40833	22	2.3	22	96	0	93	25	11	27	35	1.91
41441--41502	20	3.0	21	79	9	65	1	16	6	75	1.08
41459--41511	23	2.4	22	84	6	72	0	15	5	79	0.91
42638--42676	8	5.0	8	84	6	53	58	12	17	10	1.61
42638--42676	15	2.5	15	87	4	51	58	12	17	10	1.61
45547--45579	12	2.8	12	95	0	57	78	0	0	21	0.75
45629--45714	11	7.3	11	72	21	50	59	2	3	34	1.27
46152--46251	35	2.8	36	86	6	130	31	16	15	38	1.89
54049--54108	9	6.6	9	80	14	61	33	0	0	66	0.92
54056--54112	3	18.7	3	82	10	71	35	0	0	64	0.93
54049--54112	12	5.5	12	75	14	62	34	0	0	65	0.93
55198--55253	29	1.9	28	85	7	76	42	12	1	42	1.53
63202--65064	927	2.0	929	99	0	3703	37	15	16	29	1.91
67842--67878	10	3.7	10	88	0	56	83	0	13	2	0.74
69002--69868	84	10.4	84	91	2	1380	27	13	21	36	1.92
69002--69868	166	5.2	166	94	1	1481	27	13	21	36	1.92
70672--71337	113	5.9	113	92	4	1008	38	15	18	27	1.91
70658--71337	224	3.0	224	90	5	1005	38	16	17	27	1.91
70672--71337	337	2.0	339	88	6	1017	38	15	18	27	1.91
71126--71415	120	2.4	120	84	4	352	39	16	18	24	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71570--71626	3	18.7	3	82	10	71	35	0	0	64	0.93
71563--71626	12	5.5	12	75	14	62	34	0	0	65	0.93
80933--81003	2	35.5	2	100	0	142	49	0	0	50	1.00
91066--91156	45	2.0	46	91	2	148	27	19	25	27	1.99
91176--91213	20	1.9	20	94	0	67	18	15	34	31	1.92
97816--97855	21	1.9	21	85	10	55	35	10	2	52	1.48
99838--99928	45	2.0	46	93	2	157	26	19	26	27	1.99
102469--102494	13	2.0	13	100	0	52	84	0	0	15	0.62

Tables:   1

The End!