genome.fa.s409.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000409.1 Hibiscus syriacus cultivar Beakdansim tig00000755_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  92435

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17761--17796	2	18.0	2	100	0	72	50	0	0	50	1.00
20731--20803	30	2.5	30	93	2	121	42	17	9	30	1.81
21508--21622	41	2.8	42	91	1	178	17	13	19	49	1.79
21897--21986	29	3.3	27	79	17	96	44	0	2	53	1.13
22128--22165	18	2.0	20	85	10	53	60	0	0	39	0.97
22315--22361	20	2.3	20	92	0	85	31	14	8	44	1.76
22347--22413	15	4.5	15	81	3	82	34	17	5	41	1.74
22347--22418	30	2.4	29	93	2	126	31	18	5	44	1.72
22367--22431	30	2.2	30	83	2	78	36	16	6	40	1.74
22753--22795	22	2.0	22	90	0	68	55	0	4	39	1.20
25820--25895	31	2.4	31	80	2	89	27	31	26	14	1.95
25772--25895	63	2.0	63	81	9	146	26	28	27	17	1.98
26765--26795	7	4.4	7	100	0	62	25	29	29	16	1.96
26785--26841	17	3.4	17	92	0	96	19	22	40	17	1.91
26838--26925	9	9.1	10	75	12	94	28	28	23	19	1.98
26836--26925	19	4.7	19	87	6	128	27	27	25	18	1.98
26852--26925	29	2.6	30	77	12	75	28	28	24	18	1.98
36982--37033	19	2.5	20	81	12	61	19	17	25	38	1.93
37703--37737	16	2.1	18	89	10	56	65	0	8	25	1.21
37748--37785	20	1.9	20	88	0	58	63	2	7	26	1.35
37744--37842	42	2.3	43	72	11	96	62	5	7	25	1.41
37742--37814	35	2.0	37	82	12	89	64	4	6	24	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37841--37934	32	2.9	31	76	14	75	61	5	4	28	1.37
38269--38366	36	2.7	37	84	6	119	32	16	13	37	1.87
38830--39459	109	5.9	107	81	6	561	22	19	24	33	1.97
40039--40197	67	2.4	67	87	4	223	35	11	21	32	1.89
40072--40548	36	13.9	36	67	18	250	37	13	21	28	1.91
40240--40548	37	8.9	36	69	19	210	38	13	21	27	1.90
40072--40530	102	4.5	102	89	1	643	37	12	21	28	1.90
42039--42102	13	5.2	12	75	17	51	0	14	6	79	0.91
42030--42078	20	2.4	21	82	6	64	2	14	6	77	1.05
42032--42102	8	8.5	8	73	14	54	1	12	5	80	0.95
42032--42096	20	3.2	20	77	12	60	1	12	6	80	0.97
45296--45328	16	1.9	18	88	11	52	60	0	12	27	1.32
45262--45357	19	5.2	17	65	21	50	67	2	9	20	1.29
45906--45978	36	2.0	38	83	5	96	31	13	15	39	1.86
46648--46852	103	2.0	102	83	7	254	36	21	18	23	1.95
46704--46842	42	3.4	41	88	4	199	35	21	18	24	1.96
46867--46913	21	2.2	21	100	0	94	19	19	34	27	1.96
48232--48383	38	4.0	38	88	5	218	17	7	17	56	1.64
56239--56288	23	2.2	22	82	3	55	44	2	2	52	1.24
56282--56370	27	3.3	27	75	10	76	51	2	0	46	1.13
56329--56415	43	2.0	42	82	10	106	52	1	0	45	1.08
56379--56456	33	2.3	35	75	20	85	48	2	1	47	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63868--63910	17	2.5	17	84	3	59	37	13	2	46	1.57
73034--73062	15	1.9	15	100	0	58	41	13	10	34	1.79
72797--73314	263	2.0	263	98	0	1000	29	15	18	36	1.92
80266--80323	23	2.7	21	89	10	66	46	20	15	17	1.84
80274--80323	23	2.2	23	100	0	100	44	22	18	16	1.87
80274--80334	23	2.7	23	89	5	70	47	21	14	16	1.82
92200--92292	43	2.2	43	84	5	118	24	13	5	55	1.59

Tables:   1

The End!