genome.fa.s4090.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004090.1 Hibiscus syriacus cultivar Beakdansim tig00008947_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62517

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2485--2521	18	2.0	19	89	5	58	43	0	13	43	1.44
2450--2601	45	3.9	37	67	18	110	50	0	7	41	1.35
2518--2648	45	2.7	45	89	9	181	51	0	6	41	1.29
2496--2684	31	5.8	33	70	21	123	49	0	6	43	1.29
2540--2680	53	2.6	53	79	11	171	50	0	6	43	1.27
4132--4328	74	2.6	75	82	4	238	22	24	29	22	1.99
6914--6953	21	1.9	21	89	0	62	10	25	40	25	1.86
6936--6996	20	2.9	21	87	7	79	18	26	34	21	1.96
12758--12954	75	2.6	76	86	3	263	20	24	32	22	1.98
13255--13376	45	2.5	47	84	12	158	41	5	0	51	1.31
13300--13451	22	6.5	22	67	15	90	42	6	0	50	1.33
13288--13382	45	2.1	45	96	0	172	38	8	1	51	1.39
13379--13428	18	2.7	19	84	6	66	42	12	0	46	1.41
15252--15302	18	2.8	18	84	3	66	33	0	3	62	1.13
18456--18496	19	2.2	19	86	0	55	56	14	24	4	1.58
19078--19134	22	2.5	23	77	5	62	50	0	7	42	1.29
19114--19161	20	2.3	21	79	17	55	43	0	0	56	0.99
23329--23381	27	1.9	28	96	3	99	35	13	28	22	1.92
24225--24269	20	2.2	20	100	0	90	31	22	8	37	1.85
24369--24410	20	2.1	20	86	0	57	38	19	14	28	1.90
25173--25214	16	2.6	16	92	0	66	16	30	11	40	1.85
28589--28641	21	2.5	21	81	0	61	20	24	18	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28631--28719	20	4.4	20	82	2	124	39	20	20	20	1.93
28634--28719	41	2.1	40	86	2	118	40	19	19	19	1.91
29318--29378	14	4.0	14	73	19	50	44	22	22	9	1.82
29297--29389	33	2.8	33	90	1	132	43	24	21	10	1.84
29407--29463	14	3.7	14	72	20	51	8	22	24	43	1.81
29390--29473	33	2.5	33	98	0	159	9	22	21	46	1.80
29385--29530	19	8.1	19	72	17	132	12	21	19	45	1.83
31217--31780	94	6.1	93	94	2	938	21	12	18	47	1.81
31873--31934	20	3.2	20	79	4	81	50	17	22	9	1.75
31871--31994	33	3.5	33	85	7	140	48	22	20	8	1.76
31898--32000	19	5.9	19	73	23	100	47	26	19	6	1.74
31898--31994	33	2.9	33	89	1	149	47	25	19	7	1.75
31963--32000	20	1.9	20	100	0	76	50	28	15	5	1.66
32023--32112	20	4.6	19	76	8	83	12	18	20	48	1.79
32016--32112	39	2.5	38	84	3	113	12	19	18	49	1.79
32570--32630	21	2.9	21	72	0	68	22	36	19	21	1.95
33980--34015	14	2.6	14	95	0	63	33	0	22	44	1.53
34160--34310	19	8.7	19	68	21	98	12	23	19	45	1.84
34164--34290	33	3.8	33	93	0	218	12	23	18	45	1.83
34263--34317	19	2.8	19	83	2	65	18	20	21	40	1.92
34284--34356	20	3.6	20	70	17	60	23	17	24	34	1.96
36797--36850	24	2.2	24	93	0	90	40	20	18	20	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36797--36864	24	2.8	24	84	0	64	38	20	17	23	1.93
37726--37781	21	2.7	21	80	0	67	39	17	23	19	1.92
38527--38611	35	2.4	33	72	12	80	44	15	3	36	1.63
39239--39310	15	4.7	15	75	13	65	40	0	1	58	1.07
40943--41296	126	2.8	126	99	0	690	31	20	26	21	1.98
44386--44423	13	3.0	13	88	3	60	44	0	0	55	0.99
44437--44494	23	2.6	23	94	5	102	44	12	3	39	1.58
51279--51316	8	4.8	8	96	0	67	34	0	15	50	1.45
55396--55430	17	2.2	16	90	10	54	54	2	20	22	1.58
55754--55802	21	2.3	22	86	6	66	51	8	14	26	1.70
59958--59998	20	2.0	20	95	0	73	41	2	9	46	1.50

Tables:   1

The End!