Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004091.1 Hibiscus syriacus cultivar Beakdansim tig00008948_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67757

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1017--1090
33
2.4
29
85
14
96
27
14
8
50
1.71
1297--1380
34
2.4
36
90
5
129
38
11
16
33
1.86
5969--6002
17
2.1
17
94
5
61
17
17
23
41
1.90
6213--6348
32
4.2
32
69
15
100
36
16
11
36
1.85
20538--20572
16
2.1
17
94
5
63
11
8
14
65
1.46
22232--22261
15
2.0
15
93
0
51
43
0
0
56
0.99
24697--24746
23
2.2
22
86
10
66
62
4
4
30
1.32
25835--25877
17
2.6
16
82
10
50
62
4
0
32
1.15
25964--25993
15
2.0
15
93
0
51
40
3
6
50
1.45
25942--26017
34
2.2
35
83
2
100
47
3
2
46
1.35
26068--26108
18
2.3
18
91
0
64
41
12
2
43
1.55
29035--29064
7
4.4
7
91
8
53
23
30
30
16
1.96
29039--29064
13
2.0
13
100
0
52
23
30
30
15
1.95
29062--29090
14
2.1
14
100
0
58
6
20
51
20
1.70
29085--29134
9
5.3
9
88
9
73
28
30
30
12
1.92
29085--29134
19
2.6
19
87
9
75
28
30
30
12
1.92
36265--36309
19
2.3
20
92
3
74
22
33
28
15
1.95
36329--36367
21
1.9
21
94
5
71
38
25
20
15
1.92
39683--39716
14
2.4
14
85
5
50
55
0
0
44
0.99
41959--41996
19
2.0
19
89
0
58
44
10
0
44
1.38
46246--46283
19
2.0
19
89
0
58
47
10
0
42
1.38
46737--46794
30
1.9
30
82
3
71
37
20
3
37
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57173--57229
19
2.8
21
76
7
64
26
33
24
15
1.95
61485--61598
60
1.9
59
85
1
156
29
14
16
39
1.88

Tables:   1

The End!