genome.fa.s4092.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004092.1 Hibiscus syriacus cultivar Beakdansim tig00008952_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  139210

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2580--2845	91	3.0	91	94	3	454	32	5	15	45	1.70
9749--9796	20	2.5	19	80	6	53	60	2	2	35	1.20
17574--17622	19	2.6	19	83	0	62	6	28	6	59	1.46
23480--23548	37	1.9	37	88	5	106	44	8	5	40	1.59
32343--32400	24	2.5	23	83	5	73	53	12	22	12	1.70
33033--33071	16	2.4	16	100	0	78	30	12	0	56	1.37
33033--33095	31	2.0	32	81	9	76	34	7	1	55	1.39
33404--33443	4	9.5	4	89	10	62	25	0	2	72	0.97
35202--35230	7	4.1	7	100	0	58	27	27	13	31	1.94
36334--36366	16	2.1	16	94	0	57	78	0	9	12	0.95
36843--36891	23	2.1	23	85	7	64	59	10	2	28	1.41
40355--41353	84	12.2	82	78	6	828	30	24	19	25	1.98
40431--41354	165	5.6	162	83	4	1018	30	24	19	25	1.98
40355--41353	327	3.0	324	81	6	1179	30	24	19	25	1.98
42408--42466	24	2.6	23	78	5	66	52	10	22	15	1.72
43096--43134	16	2.4	16	100	0	78	30	12	0	56	1.37
43096--43158	31	2.0	32	81	9	76	34	7	1	55	1.39
43469--43537	18	3.6	18	78	21	61	20	2	2	73	1.09
45025--45051	14	1.9	14	100	0	54	48	0	0	51	1.00
45880--45956	20	3.8	20	75	3	91	15	22	22	40	1.91
45887--46015	41	3.2	41	84	9	144	20	20	21	37	1.95
46116--46146	5	6.4	5	96	3	55	35	22	41	0	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46638--46674	6	6.5	6	96	3	60	0	16	54	29	1.43
46829--46882	21	2.6	21	96	0	99	29	27	16	25	1.97
49441--49466	3	8.7	3	100	0	52	30	0	0	69	0.89
55043--55153	58	1.9	58	96	0	204	31	22	13	32	1.93
60814--60853	21	1.9	21	85	10	55	37	0	10	52	1.35
61640--61694	21	2.6	21	79	0	74	25	34	20	20	1.96
62177--62236	14	4.1	14	73	16	50	21	1	15	61	1.42
64789--64864	39	1.9	38	82	10	91	36	7	3	51	1.50
67682--67735	21	2.6	21	94	5	92	24	27	11	37	1.89
76696--76769	15	5.0	15	85	3	96	37	5	20	36	1.76
76703--76769	30	2.3	30	94	2	118	38	5	19	35	1.76
76752--76821	20	3.5	20	96	0	131	40	10	14	35	1.79
76976--77065	31	3.2	27	76	19	78	53	1	1	44	1.15
76976--77034	28	2.2	28	80	14	72	50	1	1	45	1.21
77051--77100	23	2.2	22	86	10	66	46	0	2	52	1.12
76994--77144	78	1.9	81	81	6	184	51	0	0	47	1.10
77093--77136	22	2.0	23	86	4	63	54	0	0	45	0.99
77097--77153	21	2.6	22	81	10	64	52	0	0	47	1.00
77033--77153	52	2.3	52	77	19	135	51	0	0	47	1.06
77341--77452	42	2.7	42	97	0	206	45	18	18	16	1.86
84259--84354	42	2.3	42	98	0	183	31	16	27	25	1.97
87861--87891	2	15.5	2	100	0	62	0	48	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87891--87948	2	29.5	2	96	3	109	50	0	0	50	1.00
88455--88536	35	2.3	35	87	8	121	34	3	18	43	1.67
92904--92981	37	2.2	36	86	4	104	35	2	19	42	1.65
94086--94158	29	2.6	29	82	10	80	30	2	6	60	1.37
94113--94181	29	2.4	29	85	7	88	26	1	10	62	1.35
98032--98107	27	2.8	28	80	6	93	53	19	9	17	1.70
109000--109033	17	1.9	18	88	5	52	52	0	0	47	1.00
117462--117660	76	2.6	77	88	3	280	23	33	23	19	1.97
123428--123490	23	3.0	20	81	11	72	20	36	25	17	1.94
126070--126270	76	2.7	76	89	3	282	24	31	24	19	1.98
127357--127403	12	4.1	12	86	10	53	48	19	12	19	1.80
128353--128377	12	2.1	12	100	0	50	40	8	8	44	1.63
128267--128497	35	6.4	36	77	12	199	42	5	9	42	1.58
128219--128497	36	7.8	35	74	13	187	42	5	8	43	1.58
128560--128594	3	11.3	3	93	6	61	31	0	0	68	0.90
131459--131503	19	2.4	19	92	3	74	11	13	8	66	1.44
134856--135765	83	10.9	83	83	5	1052	31	23	19	25	1.98
134890--135798	249	3.6	248	90	1	1329	31	23	19	25	1.98
134836--135765	164	5.6	166	83	6	1026	31	23	19	25	1.98
136435--136668	36	6.7	35	77	12	162	42	4	7	45	1.52
136552--136576	12	2.1	12	100	0	50	40	8	8	44	1.63
136754--136791	3	12.3	3	94	5	67	31	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
136747--136792	22	2.0	24	91	8	78	34	0	0	65	0.93

Tables:   1

The End!