Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004093.1 Hibiscus syriacus cultivar Beakdansim tig00008953_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  101477

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9136--9192
22
2.6
22
94
0
96
35
15
12
36
1.85
9850--10326
45
10.6
45
92
0
765
22
22
19
34
1.97
10509--10605
3
31.0
3
85
8
131
39
0
0
60
0.97
11971--11999
2
14.5
2
100
0
58
48
0
0
51
1.00
11996--12036
18
2.3
18
86
0
55
31
0
2
65
1.05
12920--12945
2
13.0
2
100
0
52
50
0
0
50
1.00
21719--21760
14
2.9
15
82
3
50
14
9
2
73
1.18
21685--21746
25
2.6
25
80
17
69
14
11
1
72
1.19
21685--21781
23
4.1
23
76
16
67
13
12
2
72
1.22
21684--21805
28
4.5
26
73
17
81
13
12
2
72
1.23
21762--21819
9
6.3
9
80
11
73
10
13
1
74
1.15
25211--25250
21
1.9
21
84
0
53
45
5
30
20
1.72
40030--40063
17
2.1
16
88
5
50
76
0
8
14
1.01
40538--40583
23
2.0
23
83
8
58
56
13
2
28
1.48
43258--43301
20
2.2
20
84
4
63
65
0
15
18
1.27
49635--49668
17
2.1
16
88
5
50
76
0
8
14
1.01
50143--50189
24
2.0
24
83
8
60
57
12
2
27
1.47
51903--51985
43
1.9
43
92
0
139
31
32
18
18
1.94
54143--54192
14
3.8
13
82
12
50
26
0
2
72
0.96
54167--54193
14
1.9
14
100
0
54
22
0
3
74
0.98
54125--54185
33
1.9
32
83
6
79
26
1
1
70
1.06
54260--54301
3
13.7
3
85
14
59
30
0
2
66
1.04
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54377--54427
27
1.9
26
88
4
75
17
7
0
74
1.05
54508--54579
18
3.8
18
73
18
58
9
12
0
77
0.98
54515--54638
23
5.0
24
66
20
60
11
10
1
76
1.09
54524--54594
29
2.5
28
80
13
74
8
11
1
78
1.01
54552--54641
36
2.4
36
83
12
103
10
8
2
78
1.03
55205--55243
2
19.5
2
100
0
78
51
0
0
48
1.00
60620--60686
7
9.6
7
100
0
134
86
0
13
0
0.57
60620--60687
1
68.0
1
73
0
55
86
0
13
0
0.56
62800--63061
129
2.0
129
99
0
517
30
11
17
40
1.84
65150--65211
2
31.0
2
100
0
124
50
0
0
50
1.00
65840--65996
65
2.4
65
86
0
224
29
21
17
31
1.96
71786--71866
23
3.6
23
73
9
87
27
27
19
25
1.99
71803--71886
21
4.0
21
75
7
80
30
25
19
25
1.98
72266--72302
16
2.3
16
95
0
65
45
0
2
51
1.15
73163--73204
20
2.1
20
86
8
59
21
45
16
16
1.86
79020--79080
23
2.7
22
85
7
86
22
29
21
26
1.99
83005--83158
65
2.4
65
85
4
195
29
20
17
31
1.96
83143--83182
19
2.2
18
91
8
64
22
30
22
25
1.99
90587--90623
2
18.5
2
100
0
74
48
0
0
51
1.00
90708--90732
2
12.5
2
100
0
50
48
0
0
52
1.00
90599--90816
109
2.0
109
100
0
436
33
4
16
44
1.68
94476--94545
30
2.3
31
82
7
90
35
8
22
32
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
95450--95545
38
2.5
38
91
0
147
28
20
25
26
1.99

Tables:   1

The End!