genome.fa.s4095.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004095.1 Hibiscus syriacus cultivar Beakdansim tig00008956_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  151178

Tables:   1   

This is table  1  of  1  ( 91 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4937--5000	30	2.1	30	97	0	119	53	4	14	28	1.60
16385--16423	18	2.2	18	85	0	51	25	2	0	71	0.98
16475--16534	19	2.9	20	76	20	61	25	1	3	70	1.12
16772--16815	20	2.2	20	83	4	52	27	20	27	25	1.99
16996--17035	18	2.4	17	88	12	57	60	0	0	40	0.97
27526--27575	21	2.4	21	81	15	52	56	12	18	14	1.68
27806--27870	31	2.1	31	88	5	96	30	10	9	49	1.69
27810--27882	31	2.4	31	83	0	92	28	12	12	46	1.78
30879--30967	27	3.3	27	98	0	169	34	20	10	34	1.86
47464--47529	33	2.0	33	90	0	105	18	4	21	56	1.59
51190--51250	22	2.9	21	80	4	77	29	4	1	63	1.24
51239--51263	13	1.9	13	100	0	50	48	4	0	48	1.20
51294--51376	35	2.4	35	91	2	132	56	0	10	32	1.34
51279--51352	13	6.1	13	76	20	79	52	0	10	36	1.36
51454--51490	2	18.5	2	100	0	74	48	0	0	51	1.00
55173--55226	26	2.1	26	89	0	81	31	20	14	33	1.93
55173--55217	13	3.5	13	96	0	81	33	22	13	31	1.92
55381--55405	2	12.5	2	100	0	50	48	0	0	52	1.00
64911--65014	34	3.1	34	90	2	158	25	28	15	30	1.96
65421--65481	20	3.0	20	92	0	104	14	27	37	19	1.91
66381--66425	20	2.2	20	100	0	90	20	0	44	35	1.51
76390--76541	75	2.0	76	89	1	234	56	7	17	18	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76669--76727	30	2.0	30	86	6	84	28	18	13	38	1.89
78676--78739	31	2.1	30	82	8	76	35	14	26	23	1.93
83736--83771	2	18.0	2	100	0	72	0	50	0	50	1.00
88343--88786	226	2.0	226	88	0	656	41	14	12	31	1.84
88418--88926	108	4.6	108	74	7	414	41	13	11	33	1.81
89437--89508	23	3.1	23	85	0	90	34	15	15	34	1.89
95808--96065	75	3.4	74	79	6	277	34	14	10	41	1.80
96575--96638	21	3.1	21	75	6	69	20	21	23	34	1.97
96721--96789	5	12.5	6	89	7	87	28	55	15	0	1.41
96725--96790	21	3.0	22	89	8	100	27	56	16	0	1.41
96725--96790	16	4.1	16	90	7	98	27	56	16	0	1.41
97392--97528	42	3.3	42	89	0	220	37	22	18	21	1.94
97417--97534	21	5.6	21	72	15	100	34	23	20	21	1.96
114816--114859	23	2.0	21	86	13	61	56	0	2	40	1.11
114815--114893	21	3.6	23	77	9	67	54	1	2	41	1.22
114857--114907	21	2.5	20	83	3	57	52	1	1	43	1.23
114822--114901	23	3.4	25	69	19	64	52	1	2	43	1.22
114876--114925	19	2.5	20	87	3	66	54	0	0	46	1.00
115534--115558	12	2.1	12	100	0	50	32	24	16	28	1.96
117062--117131	30	2.3	30	82	4	79	38	18	7	35	1.78
118646--118696	20	2.5	19	77	20	50	49	1	0	49	1.12
118627--118705	21	3.2	26	73	24	80	51	2	0	45	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
118829--118986	21	7.8	20	72	7	86	38	25	17	18	1.92
118953--119146	20	9.6	20	81	5	212	36	25	19	19	1.95
118973--119146	60	2.9	60	84	0	240	35	26	18	19	1.95
119527--119597	33	2.2	33	92	0	115	11	25	15	47	1.78
119677--119780	21	5.4	20	71	15	87	45	19	25	10	1.82
119675--119753	21	3.8	21	79	12	92	45	16	26	11	1.81
119676--119753	41	1.9	41	94	0	138	44	16	26	11	1.82
119729--119798	33	2.1	33	94	0	122	47	21	24	7	1.76
119735--119809	33	2.3	33	90	0	114	46	25	21	6	1.75
119751--119809	19	3.4	18	71	22	54	45	27	18	8	1.78
119805--119907	19	5.9	19	74	19	100	10	24	21	43	1.84
119805--119910	52	2.0	52	94	0	185	10	24	20	44	1.83
121172--121219	18	2.7	18	100	0	96	29	43	12	14	1.82
121632--122198	93	6.1	93	98	0	1098	22	12	19	46	1.83
122242--122370	19	7.3	19	73	17	116	45	27	17	9	1.78
122278--122370	33	2.8	32	90	4	141	46	26	18	8	1.78
122242--122370	52	2.5	52	74	12	138	45	27	17	9	1.78
122366--122500	19	7.6	19	75	16	128	11	19	23	45	1.82
122388--122444	14	3.7	14	77	20	60	10	21	22	45	1.82
122371--122463	33	2.8	33	95	0	168	10	20	21	47	1.80
124428--124463	14	2.6	14	95	0	63	33	0	22	44	1.53
124570--124667	19	5.4	19	82	13	125	44	18	21	15	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
124570--124686	53	2.2	53	95	1	209	43	18	23	14	1.87
124676--124843	19	9.6	19	76	18	177	14	23	17	44	1.86
124682--124843	33	4.7	33	74	16	159	14	22	17	45	1.85
124676--124843	52	3.2	52	97	0	309	14	23	17	44	1.86
124902--124999	19	5.4	19	84	13	143	45	17	22	14	1.84
124902--125018	53	2.2	53	98	1	227	44	17	23	13	1.85
127533--127579	24	2.0	24	87	8	69	38	21	14	25	1.92
128262--128491	20	11.5	20	87	0	264	20	17	25	36	1.94
128461--128512	20	2.6	20	90	0	77	11	15	25	48	1.78
128498--128580	21	4.0	21	73	6	78	25	16	24	33	1.96
128478--128576	42	2.4	42	78	8	105	21	17	23	38	1.93
133658--133695	6	6.3	6	100	0	76	31	52	15	0	1.43
141064--141113	19	2.6	19	93	0	82	26	28	14	32	1.94
141188--141236	18	2.7	18	100	0	98	28	26	18	26	1.98
141289--141341	20	2.5	21	84	6	63	35	20	18	24	1.95
143399--143459	29	2.1	30	84	3	79	37	4	21	36	1.75
144971--145013	17	2.5	17	96	0	77	27	0	18	53	1.45
145182--145230	24	2.0	24	96	0	89	34	12	12	40	1.80
146290--146337	20	2.4	20	89	0	69	35	16	22	25	1.95
146502--146540	20	1.9	20	84	5	51	41	35	10	12	1.77
147091--147131	14	3.1	14	89	6	59	26	19	31	21	1.97
147093--147132	12	3.1	13	85	10	55	30	20	30	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
147931--148058	31	4.1	31	79	6	141	31	21	17	29	1.96
147932--148055	63	2.0	62	87	4	178	29	20	18	30	1.97
148321--148405	29	2.9	30	74	8	77	31	21	9	37	1.85

Tables:   1

The End!