Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01004096.1 Hibiscus syriacus cultivar Beakdansim tig00008957_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 961865
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 1 of 5
Found at i:2608 original size:28 final size:30
Alignment explanation
Indices: 2563--2675 Score: 141
Period size: 28 Copynumber: 4.0 Consensus size: 30
2553 CAGTGCAGCC
2563 GTAGG-TCGCCATGGCATCCGAGCGAGC-TT
1 GTAGGATCGCCATGGCATCCGAGCGA-CATT
2592 G-A-GATCGCCATGGCATCCGAGCGACATT
1 GTAGGATCGCCATGGCATCCGAGCGACATT
* *
2620 GTAGGA-CGCCATGGCATCCCAGCG-CATG
1 GTAGGATCGCCATGGCATCCGAGCGACATT
*
2648 GTAGG-TCGCCAAGGCATCCGAGCGACAT
1 GTAGGATCGCCATGGCATCCGAGCGACAT
2676 GCATGCTTTG
Statistics
Matches: 74, Mismatches: 4, Indels: 12
0.82 0.04 0.13
Matches are distributed among these distances:
27 2 0.03
28 48 0.65
29 22 0.30
30 2 0.03
ACGTcount: A:0.22, C:0.29, G:0.32, T:0.17
Consensus pattern (30 bp):
GTAGGATCGCCATGGCATCCGAGCGACATT
Found at i:2632 original size:57 final size:57
Alignment explanation
Indices: 2563--2675 Score: 149
Period size: 57 Copynumber: 2.0 Consensus size: 57
2553 CAGTGCAGCC
* * * *
2563 GTAGGTCGCCATGGCATCCGAGCG-A-GCTTGAGATCGCCATGGCATCCGAGCGACATT
1 GTAGGACGCCATGGCATCCCAGCGCATG-GT-AGATCGCCAAGGCATCCGAGCGACATT
*
2620 GTAGGACGCCATGGCATCCCAGCGCATGGTAGGTCGCCAAGGCATCCGAGCGACAT
1 GTAGGACGCCATGGCATCCCAGCGCATGGTAGATCGCCAAGGCATCCGAGCGACAT
2676 GCATGCTTTG
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
57 46 0.94
58 2 0.04
59 1 0.02
ACGTcount: A:0.22, C:0.29, G:0.32, T:0.17
Consensus pattern (57 bp):
GTAGGACGCCATGGCATCCCAGCGCATGGTAGATCGCCAAGGCATCCGAGCGACATT
Found at i:2878 original size:23 final size:23
Alignment explanation
Indices: 2796--2877 Score: 128
Period size: 23 Copynumber: 3.6 Consensus size: 23
2786 TGAATTCAGC
2796 TGCATTATTGCAGCACTTATTGT
1 TGCATTATTGCAGCACTTATTGT
* *
2819 TGCATTATTGCAGCCCTTATTGC
1 TGCATTATTGCAGCACTTATTGT
**
2842 TGCATTATTGCAGTTCTTATTGT
1 TGCATTATTGCAGCACTTATTGT
2865 TGCATTATTGCAG
1 TGCATTATTGCAG
2878 TCGTCAGCTC
Statistics
Matches: 54, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 54 1.00
ACGTcount: A:0.20, C:0.18, G:0.18, T:0.44
Consensus pattern (23 bp):
TGCATTATTGCAGCACTTATTGT
Found at i:3012 original size:21 final size:22
Alignment explanation
Indices: 2981--3023 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
2971 ATAAAGAAAG
2981 AAAGAGAGAAGAG-AGCAAGGGA
1 AAAGAGAGAAGAGAAG-AAGGGA
3003 AAAGAG-GAAGAGAAGAAGGGA
1 AAAGAGAGAAGAGAAGAAGGGA
3024 GAGCACAACA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 12 0.60
22 8 0.40
ACGTcount: A:0.56, C:0.02, G:0.42, T:0.00
Consensus pattern (22 bp):
AAAGAGAGAAGAGAAGAAGGGA
Found at i:3151 original size:37 final size:39
Alignment explanation
Indices: 3100--3181 Score: 125
Period size: 37 Copynumber: 2.2 Consensus size: 39
3090 TTAGTTTATG
3100 GTTTAAGGTAAAACAAAATTTTAGTTAA-TAGTTAGTTA
1 GTTTAAGGTAAAACAAAATTTTAGTTAATTAGTTAGTTA
* *
3138 GTTTAAGGT-AAACAAAATTTTCGTTAATTAGTTTGTTA
1 GTTTAAGGTAAAACAAAATTTTAGTTAATTAGTTAGTTA
3176 -TTTAAG
1 GTTTAAG
3182 TTATATTGTT
Statistics
Matches: 41, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
37 23 0.56
38 18 0.44
ACGTcount: A:0.38, C:0.04, G:0.16, T:0.43
Consensus pattern (39 bp):
GTTTAAGGTAAAACAAAATTTTAGTTAATTAGTTAGTTA
Found at i:3192 original size:17 final size:18
Alignment explanation
Indices: 3170--3205 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
3160 GTTAATTAGT
3170 TTGTTA-TTTAAGTTATA
1 TTGTTAGTTTAAGTTATA
3187 TTGTTAGTTTAAGTTATA
1 TTGTTAGTTTAAGTTATA
3205 T
1 T
3206 GATACATAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 6 0.33
18 12 0.67
ACGTcount: A:0.28, C:0.00, G:0.14, T:0.58
Consensus pattern (18 bp):
TTGTTAGTTTAAGTTATA
Found at i:3431 original size:34 final size:35
Alignment explanation
Indices: 3365--3431 Score: 82
Period size: 34 Copynumber: 1.9 Consensus size: 35
3355 TTTAGTTAAG
* ** *
3365 TAGTTTATAGTAGTTTAAGTTTTATTATAATAAAAA
1 TAGTTTATA-TAGTTTAAGTTATAAAAGAATAAAAA
3401 TAGTTTAT-TAGTTTAAGTTATAAAAGAATAA
1 TAGTTTATATAGTTTAAGTTATAAAAGAATAA
3432 TTATTAAATT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
34 19 0.70
36 8 0.30
ACGTcount: A:0.43, C:0.00, G:0.12, T:0.45
Consensus pattern (35 bp):
TAGTTTATATAGTTTAAGTTATAAAAGAATAAAAA
Found at i:3542 original size:21 final size:21
Alignment explanation
Indices: 3517--3556 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
3507 GTTAATTAGT
3517 TTGTTAGTTTAAGTTATATAA
1 TTGTTAGTTTAAGTTATATAA
3538 TTGTTAGTTTAAGTTATAT
1 TTGTTAGTTTAAGTTATAT
3557 CATAGAAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.30, C:0.00, G:0.15, T:0.55
Consensus pattern (21 bp):
TTGTTAGTTTAAGTTATATAA
Found at i:3792 original size:4 final size:4
Alignment explanation
Indices: 3783--3809 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
3773 GTGTTGTAAA
3783 TTAG TTAG TTAG TTAG TTAG TTAG TTA
1 TTAG TTAG TTAG TTAG TTAG TTAG TTA
3810 CTTAACATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.26, C:0.00, G:0.22, T:0.52
Consensus pattern (4 bp):
TTAG
Found at i:3969 original size:15 final size:14
Alignment explanation
Indices: 3937--3984 Score: 51
Period size: 15 Copynumber: 3.3 Consensus size: 14
3927 GTCATTTGGG
*
3937 AATAATTGTGAATAA
1 AATAATTGTTAAT-A
3952 AATAATTGTTTAATA
1 AATAATTG-TTAATA
* *
3967 AATTATTATTAATA
1 AATAATTGTTAATA
3981 AATA
1 AATA
3985 TTTGAATATT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
14 9 0.32
15 15 0.54
16 4 0.14
ACGTcount: A:0.52, C:0.00, G:0.06, T:0.42
Consensus pattern (14 bp):
AATAATTGTTAATA
Found at i:10852 original size:23 final size:23
Alignment explanation
Indices: 10822--10883 Score: 124
Period size: 23 Copynumber: 2.7 Consensus size: 23
10812 CCCCCCATGA
10822 GGGAACCGATTCCCCCTTTGAAG
1 GGGAACCGATTCCCCCTTTGAAG
10845 GGGAACCGATTCCCCCTTTGAAG
1 GGGAACCGATTCCCCCTTTGAAG
10868 GGGAACCGATTCCCCC
1 GGGAACCGATTCCCCC
10884 CACAGGGGAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 39 1.00
ACGTcount: A:0.21, C:0.34, G:0.26, T:0.19
Consensus pattern (23 bp):
GGGAACCGATTCCCCCTTTGAAG
Found at i:10892 original size:21 final size:21
Alignment explanation
Indices: 10822--10905 Score: 80
Period size: 23 Copynumber: 3.8 Consensus size: 21
10812 CCCCCCATGA
*
10822 GGGAACCGATTCCCCCTTTGAAG
1 GGGAACCGATTCCCCC--TCAAG
*
10845 GGGAACCGATTCCCCCTTTGAAG
1 GGGAACCGATTCCCCC--TCAAG
10868 GGGAACCGATTCCCCC-CACAG
1 GGGAACCGATTCCCCCTCA-AG
* *
10889 GGGAATCGATACCCCCT
1 GGGAACCGATTCCCCCT
10906 GGGGTTCTGT
Statistics
Matches: 56, Mismatches: 3, Indels: 5
0.88 0.05 0.08
Matches are distributed among these distances:
20 1 0.02
21 16 0.29
23 39 0.70
ACGTcount: A:0.23, C:0.35, G:0.25, T:0.18
Consensus pattern (21 bp):
GGGAACCGATTCCCCCTCAAG
Found at i:15459 original size:17 final size:17
Alignment explanation
Indices: 15439--15480 Score: 66
Period size: 17 Copynumber: 2.5 Consensus size: 17
15429 ATTAGTATCA
15439 AATAATTAAATATTAAT
1 AATAATTAAATATTAAT
* *
15456 AATAAATCAATATTAAT
1 AATAATTAAATATTAAT
15473 AATAATTA
1 AATAATTA
15481 CTAAATCATT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (17 bp):
AATAATTAAATATTAAT
Found at i:15496 original size:11 final size:11
Alignment explanation
Indices: 15458--15588 Score: 91
Period size: 11 Copynumber: 10.7 Consensus size: 11
15448 ATATTAATAA
*
15458 TAAATCAATAT
1 TAAATCATTAT
* *
15469 TAATAATAATTAC
1 T-A-AATCATTAT
15482 TAAATCATTAT
1 TAAATCATTAT
15493 TAAATCATTAT
1 TAAATCATTAT
15504 TAAATCATTATT
1 TAAATCATTA-T
15516 ATCAAATCATTATT
1 -T-AAATCATTA-T
*
15530 ATAATGATTATTAT
1 -TAA--ATCATTAT
15544 TAAATCATTAT
1 TAAATCATTAT
*
15555 TATAATAATTATT
1 TA-AATCATTA-T
*
15568 ATCAAATCATTAC
1 -T-AAATCATTAT
15581 TAAATCAT
1 TAAATCAT
15589 CAGTACATTA
Statistics
Matches: 99, Mismatches: 10, Indels: 22
0.76 0.08 0.17
Matches are distributed among these distances:
11 45 0.45
12 11 0.11
13 14 0.14
14 22 0.22
15 7 0.07
ACGTcount: A:0.47, C:0.09, G:0.01, T:0.44
Consensus pattern (11 bp):
TAAATCATTAT
Found at i:15505 original size:14 final size:14
Alignment explanation
Indices: 15488--15579 Score: 99
Period size: 14 Copynumber: 7.1 Consensus size: 14
15478 TTACTAAATC
15488 ATTATTAAATC---
1 ATTATTAAATCATT
15499 ATTATTAAATCATT
1 ATTATTAAATCATT
*
15513 ATTATCAAATCATT
1 ATTATTAAATCATT
*
15527 ATTA-T-AATGATT
1 ATTATTAAATCATT
15539 ATTATTAAATCATT
1 ATTATTAAATCATT
*
15553 ATTA-T-AATAATT
1 ATTATTAAATCATT
*
15565 ATTATCAAATCATT
1 ATTATTAAATCATT
15579 A
1 A
15580 CTAAATCATC
Statistics
Matches: 67, Mismatches: 7, Indels: 11
0.79 0.08 0.13
Matches are distributed among these distances:
11 11 0.16
12 20 0.30
13 2 0.03
14 34 0.51
ACGTcount: A:0.45, C:0.08, G:0.01, T:0.47
Consensus pattern (14 bp):
ATTATTAAATCATT
Found at i:15548 original size:26 final size:26
Alignment explanation
Indices: 15488--15628 Score: 146
Period size: 26 Copynumber: 5.6 Consensus size: 26
15478 TTACTAAATC
* *
15488 ATTATTAAATCATTATTA-AATCATT
1 ATTATCAAATCATTATTATAATAATT
*
15513 ATTATCAAATCATTATTATAATGATT
1 ATTATCAAATCATTATTATAATAATT
*
15539 ATTATTAAATCATTATTATAATAATT
1 ATTATCAAATCATTATTATAATAATT
* * *
15565 ATTATCAAATCATTACTA-AATCATC
1 ATTATCAAATCATTATTATAATAATT
* * * * *
15590 AGTA-C-ATTAAATATTAAAATAATT
1 ATTATCAAATCATTATTATAATAATT
15614 ATTATCAAATCATTA
1 ATTATCAAATCATTA
15629 CGAAATCATA
Statistics
Matches: 93, Mismatches: 19, Indels: 7
0.78 0.16 0.06
Matches are distributed among these distances:
23 7 0.08
24 9 0.10
25 26 0.28
26 51 0.55
ACGTcount: A:0.46, C:0.09, G:0.01, T:0.43
Consensus pattern (26 bp):
ATTATCAAATCATTATTATAATAATT
Found at i:15648 original size:49 final size:50
Alignment explanation
Indices: 15488--15649 Score: 188
Period size: 49 Copynumber: 3.2 Consensus size: 50
15478 TTACTAAATC
* * *
15488 ATTATTAAATCATTATTAAATCATTATTATCAAATCATTATTATAATGAT-T
1 ATTATTAAATCATTA-TAAATAATTATTATCAAATCATTACTA-AATCATAT
15539 ATTATTAAATCATTATTATAATAATTATTATCAAATCATTACTAAATCATCAGT
1 ATTATTAAATCATTA-TA-AATAATTATTATCAAATCATTACTAAATCAT-A-T
* *
15593 A-CATTAAAT-ATTA-AAATAATTATTATCAAATCATTACGAAATCATAT
1 ATTATTAAATCATTATAAATAATTATTATCAAATCATTACTAAATCATAT
15640 AATTATTAAA
1 -ATTATTAAA
15650 AAAATCCTAT
Statistics
Matches: 99, Mismatches: 6, Indels: 14
0.83 0.05 0.12
Matches are distributed among these distances:
47 1 0.01
48 2 0.02
49 36 0.36
50 1 0.01
51 23 0.23
52 27 0.27
53 7 0.07
54 2 0.02
ACGTcount: A:0.47, C:0.09, G:0.02, T:0.42
Consensus pattern (50 bp):
ATTATTAAATCATTATAAATAATTATTATCAAATCATTACTAAATCATAT
Found at i:16076 original size:49 final size:49
Alignment explanation
Indices: 16015--16210 Score: 329
Period size: 49 Copynumber: 4.0 Consensus size: 49
16005 ATTATTAATC
*
16015 ATTACTAAATCATTACTATCAAATCATTAAATATTAATAATAATTTTATT
1 ATTACT-AATCATTACTATCAAATCATTAAATATTAATAATAATTTCATT
*
16065 ATTATTAATCATTACTATCAAATCATTAAATATTAATAATAATTTCATT
1 ATTACTAATCATTACTATCAAATCATTAAATATTAATAATAATTTCATT
*
16114 ATTACTAATCATTACTATCAAATCATTAAATATTAATAATAATTTCATC
1 ATTACTAATCATTACTATCAAATCATTAAATATTAATAATAATTTCATT
* * *
16163 ATTAGTAATTATTATTATCAAATCATTAAATATTAATAATAATTTCAT
1 ATTACTAATCATTACTATCAAATCATTAAATATTAATAATAATTTCAT
16211 ACGAAGGTAA
Statistics
Matches: 139, Mismatches: 7, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
49 134 0.96
50 5 0.04
ACGTcount: A:0.45, C:0.10, G:0.01, T:0.44
Consensus pattern (49 bp):
ATTACTAATCATTACTATCAAATCATTAAATATTAATAATAATTTCATT
Found at i:16098 original size:28 final size:28
Alignment explanation
Indices: 16067--16150 Score: 83
Period size: 28 Copynumber: 3.2 Consensus size: 28
16057 ATTTTATTAT
16067 TATTAATCATTACTATCAAATCATTAAA
1 TATTAATCATTACTATCAAATCATTAAA
** *
16095 TATTAAT-A--A-TA--ATTTCATT-AT
1 TATTAATCATTACTATCAAATCATTAAA
*
16116 TACTAATCATTACTATCAAATCATTAAA
1 TATTAATCATTACTATCAAATCATTAAA
16144 TATTAAT
1 TATTAAT
16151 AATAATTTCA
Statistics
Matches: 41, Mismatches: 8, Indels: 14
0.65 0.13 0.22
Matches are distributed among these distances:
21 7 0.17
22 7 0.17
24 3 0.07
25 3 0.07
27 7 0.17
28 14 0.34
ACGTcount: A:0.45, C:0.12, G:0.00, T:0.43
Consensus pattern (28 bp):
TATTAATCATTACTATCAAATCATTAAA
Found at i:16148 original size:21 final size:21
Alignment explanation
Indices: 16124--16200 Score: 57
Period size: 21 Copynumber: 3.3 Consensus size: 21
16114 ATTACTAATC
*
16124 ATTACTATCAAATCATTAAAT
1 ATTAATATCAAATCATTAAAT
16145 ATTAATAAT-AATTTCATCATTAGTAATT
1 ATTAAT-ATCAA----ATCATTA--AA-T
*
16173 ATTATTATCAAATCATTAAAT
1 ATTAATATCAAATCATTAAAT
16194 ATTAATA
1 ATTAATA
16201 ATAATTTCAT
Statistics
Matches: 44, Mismatches: 3, Indels: 18
0.68 0.05 0.28
Matches are distributed among these distances:
21 14 0.32
22 4 0.09
24 7 0.16
25 7 0.16
27 4 0.09
28 8 0.18
ACGTcount: A:0.47, C:0.09, G:0.01, T:0.43
Consensus pattern (21 bp):
ATTAATATCAAATCATTAAAT
Found at i:17150 original size:26 final size:26
Alignment explanation
Indices: 17091--17184 Score: 66
Period size: 26 Copynumber: 3.5 Consensus size: 26
17081 ACTAATATTA
* * *
17091 TTAATAATGATTTAATAATT-ATTA-
1 TTAATAATGATTTGATATTTAATGAT
17115 TTAATCTAATGATTTGATATTTAATGAT
1 TTAA--TAATGATTTGATATTTAATGAT
* * *
17143 TTAATAATAATATGATTTATTAATGAT
1 TTAATAATGATTTGATAT-TTAATGAT
*
17170 TACTAATAATTATTT
1 T--TAATAATGATTT
17185 ATTATAAATA
Statistics
Matches: 55, Mismatches: 8, Indels: 9
0.76 0.11 0.12
Matches are distributed among these distances:
24 4 0.07
26 25 0.45
27 12 0.22
28 4 0.07
29 10 0.18
ACGTcount: A:0.41, C:0.02, G:0.06, T:0.50
Consensus pattern (26 bp):
TTAATAATGATTTGATATTTAATGAT
Found at i:17170 original size:27 final size:24
Alignment explanation
Indices: 17135--17188 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 24
17125 GATTTGATAT
17135 TTAATGATTTAATAATAATATGATTTA
1 TTAATGA-TTAATAATAAT-T-ATTTA
*
17162 TTAATGATTACTAATAATTATTTA
1 TTAATGATTAATAATAATTATTTA
17186 TTA
1 TTA
17189 TAAATATTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
24 8 0.31
25 1 0.04
26 10 0.38
27 7 0.27
ACGTcount: A:0.43, C:0.02, G:0.06, T:0.50
Consensus pattern (24 bp):
TTAATGATTAATAATAATTATTTA
Found at i:17436 original size:17 final size:17
Alignment explanation
Indices: 17382--17442 Score: 50
Period size: 18 Copynumber: 3.4 Consensus size: 17
17372 AAAATATAAA
*
17382 TTAAACAAAATATTTTT
1 TTAAACACAATATTTTT
* * *
17399 TAAAACAACATACAATATTT
1 TTAAAC-ACA-A-TATTTTT
17419 TTAAACACAATATTTTTT
1 TTAAACACAATA-TTTTT
17437 TTAAAC
1 TTAAAC
17443 GGGAATTATC
Statistics
Matches: 33, Mismatches: 7, Indels: 7
0.70 0.15 0.15
Matches are distributed among these distances:
17 6 0.18
18 13 0.39
19 4 0.12
20 10 0.30
ACGTcount: A:0.48, C:0.11, G:0.00, T:0.41
Consensus pattern (17 bp):
TTAAACACAATATTTTT
Found at i:18133 original size:46 final size:49
Alignment explanation
Indices: 18073--18182 Score: 129
Period size: 50 Copynumber: 2.3 Consensus size: 49
18063 GTTTAAATAC
* * *
18073 ACTAACAAATTAATTAAAT-ATTTTTTTTTTACAT-T-TA-ATAACTTAA
1 ACTAACAAACTAATTAAATAATTTTTTATATA-ATATATATATAACTTAA
* *
18119 ACTAATAAACTAATTAACTAATTTTTTATATAATATAATATATAACTTAA
1 ACTAACAAACTAATTAAATAATTTTTTATATAATAT-ATATATAACTTAA
18169 ACTAACAAACTAAT
1 ACTAACAAACTAAT
18183 AATTTATACT
Statistics
Matches: 53, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
46 18 0.34
47 11 0.21
49 2 0.04
50 22 0.42
ACGTcount: A:0.48, C:0.10, G:0.00, T:0.42
Consensus pattern (49 bp):
ACTAACAAACTAATTAAATAATTTTTTATATAATATATATATAACTTAA
Found at i:18193 original size:21 final size:21
Alignment explanation
Indices: 18160--18208 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
18150 AATATAATAT
18160 ATAACTTAAACTAACAAACTA
1 ATAACTTAAACTAACAAACTA
* *
18181 ATAATTTATACTAACAAACTA
1 ATAACTTAAACTAACAAACTA
18202 ATTAACT
1 A-TAACT
18209 AAATTTTAGT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.53, C:0.16, G:0.00, T:0.31
Consensus pattern (21 bp):
ATAACTTAAACTAACAAACTA
Found at i:18374 original size:12 final size:12
Alignment explanation
Indices: 18357--18388 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
18347 TTTCTATATC
*
18357 GCTTCTTCTTCT
1 GCTTCTACTTCT
18369 GCTTCTACTTCT
1 GCTTCTACTTCT
18381 GCTTCTAC
1 GCTTCTAC
18389 CCTAAACCCC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.06, C:0.34, G:0.09, T:0.50
Consensus pattern (12 bp):
GCTTCTACTTCT
Found at i:18682 original size:29 final size:29
Alignment explanation
Indices: 18640--18753 Score: 135
Period size: 29 Copynumber: 3.9 Consensus size: 29
18630 GTAAAGCTTG
*
18640 GTCGCCGGGCGTGCATGGTGACCTACCAT
1 GTCGCTGGGCGTGCATGGTGACCTACCAT
*
18669 GTCGCTGGGCGTGCAT-GTCAACCTACCAT
1 GTCGCTGGGCGTGCATGGT-GACCTACCAT
* * *
18698 GTCGCTGGGCGTACATGGCGACCTACCAC
1 GTCGCTGGGCGTGCATGGTGACCTACCAT
18727 GTCG-TCGGGAC-TGCATGGTGACCTACC
1 GTCGCT-GGG-CGTGCATGGTGACCTACC
18754 CCAAGAACAT
Statistics
Matches: 73, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
28 3 0.04
29 68 0.93
30 2 0.03
ACGTcount: A:0.16, C:0.32, G:0.32, T:0.21
Consensus pattern (29 bp):
GTCGCTGGGCGTGCATGGTGACCTACCAT
Found at i:18804 original size:30 final size:29
Alignment explanation
Indices: 18770--18837 Score: 88
Period size: 28 Copynumber: 2.4 Consensus size: 29
18760 ACATTCGACG
18770 TGCATAAG-TCATGCACAACTCCCACATGCA
1 TGCATAAGCTCATG-A-AACTCCCACATGCA
*
18800 TGCAT-AGCTCGTGAAACTCCCACATGCA
1 TGCATAAGCTCATGAAACTCCCACATGCA
18828 TGCAT-AGCTC
1 TGCATAAGCTC
18838 GTGACCTACG
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
28 24 0.67
29 3 0.08
30 9 0.25
ACGTcount: A:0.29, C:0.32, G:0.16, T:0.22
Consensus pattern (29 bp):
TGCATAAGCTCATGAAACTCCCACATGCA
Found at i:18819 original size:28 final size:28
Alignment explanation
Indices: 18786--18841 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
18776 AGTCATGCAC
18786 AACTCCCACATGCATGCATAGCTCGTGA
1 AACTCCCACATGCATGCATAGCTCGTGA
18814 AACTCCCACATGCATGCATAGCTCGTGA
1 AACTCCCACATGCATGCATAGCTCGTGA
18842 CCTACGGCCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.29, C:0.32, G:0.18, T:0.21
Consensus pattern (28 bp):
AACTCCCACATGCATGCATAGCTCGTGA
Found at i:19330 original size:37 final size:37
Alignment explanation
Indices: 19280--19367 Score: 108
Period size: 37 Copynumber: 2.4 Consensus size: 37
19270 CCCGACCCGA
*
19280 TCGGGTCGGATTTT-T-TTAAAAAAAATTCGGATTCGGG
1 TCGGGTCGGATTTTATATT--AAAAAATTCGGAGTCGGG
**
19317 TCGGGTCGGATTTTATATTAAAATTTTCGGAGTCGGG
1 TCGGGTCGGATTTTATATTAAAAAATTCGGAGTCGGG
19354 TCGGAGTCGGATTT
1 TCGG-GTCGGATTT
19368 AAGGTTAAAA
Statistics
Matches: 45, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
37 33 0.73
38 10 0.22
39 2 0.04
ACGTcount: A:0.23, C:0.11, G:0.30, T:0.36
Consensus pattern (37 bp):
TCGGGTCGGATTTTATATTAAAAAATTCGGAGTCGGG
Found at i:19376 original size:38 final size:37
Alignment explanation
Indices: 19305--19378 Score: 103
Period size: 38 Copynumber: 2.0 Consensus size: 37
19295 TTAAAAAAAA
* * *
19305 TTCGGATTCGGGTCGGGTCGGATTTTATATTAAAATT
1 TTCGGAGTCGGGTCGGGTCGGATTTAAGATTAAAATT
*
19342 TTCGGAGTCGGGTCGGAGTCGGATTTAAGGTTAAAAT
1 TTCGGAGTCGGGTCGG-GTCGGATTTAAGATTAAAAT
19379 AACCCGACCC
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
37 15 0.47
38 17 0.53
ACGTcount: A:0.23, C:0.11, G:0.31, T:0.35
Consensus pattern (37 bp):
TTCGGAGTCGGGTCGGGTCGGATTTAAGATTAAAATT
Found at i:25707 original size:22 final size:22
Alignment explanation
Indices: 25692--25734 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
25682 ATTCGTTTTT
25692 GTTCAATAATTCATTCATTTAC
1 GTTCAATAATTCATTCATTTAC
* *
25714 GTTCAGTAATTCGTTCATTTA
1 GTTCAATAATTCATTCATTTA
25735 TATTCATTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.28, C:0.16, G:0.09, T:0.47
Consensus pattern (22 bp):
GTTCAATAATTCATTCATTTAC
Found at i:25740 original size:22 final size:22
Alignment explanation
Indices: 25693--25740 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
25683 TTCGTTTTTG
*
25693 TTCAATAATTCATTCATTTACG
1 TTCAATAATTCATTCATTTACA
* * *
25715 TTCAGTAATTCGTTCATTTATA
1 TTCAATAATTCATTCATTTACA
25737 TTCA
1 TTCA
25741 TTTGTTTAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.29, C:0.17, G:0.06, T:0.48
Consensus pattern (22 bp):
TTCAATAATTCATTCATTTACA
Found at i:29818 original size:22 final size:24
Alignment explanation
Indices: 29769--29822 Score: 69
Period size: 22 Copynumber: 2.4 Consensus size: 24
29759 TTAATTGAGT
**
29769 TTTTTATAAATAAATTATATTTTA
1 TTTTTATAAATAAATTATATTAAA
29793 -TTTTA-AAATAAATT-TATTAAA
1 TTTTTATAAATAAATTATATTAAA
29814 TTTTTATAA
1 TTTTTATAA
29823 GCGTGACATA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
21 5 0.19
22 14 0.54
23 7 0.27
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (24 bp):
TTTTTATAAATAAATTATATTAAA
Found at i:30123 original size:19 final size:19
Alignment explanation
Indices: 30095--30136 Score: 75
Period size: 19 Copynumber: 2.2 Consensus size: 19
30085 TTTAGGGTAA
*
30095 ACTTAGTATTCCAGTTATC
1 ACTTACTATTCCAGTTATC
30114 ACTTACTATTCCAGTTATC
1 ACTTACTATTCCAGTTATC
30133 ACTT
1 ACTT
30137 TTATTTCGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.26, C:0.24, G:0.07, T:0.43
Consensus pattern (19 bp):
ACTTACTATTCCAGTTATC
Found at i:33906 original size:24 final size:24
Alignment explanation
Indices: 33874--33931 Score: 107
Period size: 24 Copynumber: 2.4 Consensus size: 24
33864 CATGTGGTAC
*
33874 CGATGCTCTAGGTAAGAGAAGTAT
1 CGATACTCTAGGTAAGAGAAGTAT
33898 CGATACTCTAGGTAAGAGAAGTAT
1 CGATACTCTAGGTAAGAGAAGTAT
33922 CGATACTCTA
1 CGATACTCTA
33932 TAGGTAGTAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.34, C:0.16, G:0.24, T:0.26
Consensus pattern (24 bp):
CGATACTCTAGGTAAGAGAAGTAT
Found at i:33942 original size:20 final size:23
Alignment explanation
Indices: 33874--33948 Score: 93
Period size: 24 Copynumber: 3.3 Consensus size: 23
33864 CATGTGGTAC
*
33874 CGATGCTCTAGGTAAGAGAAGTAT
1 CGATACTCTA-GTAAGAGAAGTAT
33898 CGATACTCTAGGTAAGAGAAGTAT
1 CGATACTCTA-GTAAGAGAAGTAT
*
33922 CGATACTCTA-T-AG-GTAGTAT
1 CGATACTCTAGTAAGAGAAGTAT
33942 CGATACT
1 CGATACT
33949 ACAATCTTGC
Statistics
Matches: 49, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
20 13 0.27
21 2 0.04
22 1 0.02
24 33 0.67
ACGTcount: A:0.33, C:0.15, G:0.24, T:0.28
Consensus pattern (23 bp):
CGATACTCTAGTAAGAGAAGTAT
Found at i:34175 original size:20 final size:20
Alignment explanation
Indices: 34146--34190 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
34136 TAATTTGCAG
34146 AGAAAACATCACAAACAGCT
1 AGAAAACATCACAAACAGCT
* * * *
34166 AGAAATCATCTCCAACGGCT
1 AGAAAACATCACAAACAGCT
34186 AGAAA
1 AGAAA
34191 CGACCACAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.49, C:0.24, G:0.13, T:0.13
Consensus pattern (20 bp):
AGAAAACATCACAAACAGCT
Found at i:58709 original size:27 final size:27
Alignment explanation
Indices: 58671--58736 Score: 105
Period size: 27 Copynumber: 2.4 Consensus size: 27
58661 TATATCTCGT
*
58671 AATCGCAACTCATAACCTAAAACCCTA
1 AATCGCAACTCATAACATAAAACCCTA
*
58698 AATCGTAACTCATAACATAAAACCCTA
1 AATCGCAACTCATAACATAAAACCCTA
*
58725 AATCACAACTCA
1 AATCGCAACTCA
58737 GTCTCATCTC
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.47, C:0.30, G:0.03, T:0.20
Consensus pattern (27 bp):
AATCGCAACTCATAACATAAAACCCTA
Found at i:58789 original size:22 final size:22
Alignment explanation
Indices: 58763--58820 Score: 89
Period size: 22 Copynumber: 2.6 Consensus size: 22
58753 TCACTCTCTA
*
58763 CGACGACATCCGTCCCCATCTC
1 CGACGAAATCCGTCCCCATCTC
*
58785 TGACGAAATCCGTCCCCATCTC
1 CGACGAAATCCGTCCCCATCTC
*
58807 CGGCGAAATCCGTC
1 CGACGAAATCCGTC
58821 TATCACCATC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.21, C:0.43, G:0.17, T:0.19
Consensus pattern (22 bp):
CGACGAAATCCGTCCCCATCTC
Found at i:59240 original size:20 final size:20
Alignment explanation
Indices: 59196--59269 Score: 85
Period size: 20 Copynumber: 3.7 Consensus size: 20
59186 GCGATTTTAG
*
59196 TTTCGCGTTGCGATAGTCAA
1 TTTCGCGTTGCGATAGTCAT
*
59216 ATTCGCGTTGCGATAGTCAT
1 TTTCGCGTTGCGATAGTCAT
* * **
59236 TTTCGTGCTGCGATTTTCAT
1 TTTCGCGTTGCGATAGTCAT
*
59256 TTTCGTGTTGCGAT
1 TTTCGCGTTGCGAT
59270 TTTAAGTTTC
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 46 1.00
ACGTcount: A:0.15, C:0.19, G:0.24, T:0.42
Consensus pattern (20 bp):
TTTCGCGTTGCGATAGTCAT
Found at i:59270 original size:20 final size:20
Alignment explanation
Indices: 59186--59272 Score: 77
Period size: 20 Copynumber: 4.4 Consensus size: 20
59176 AAATCGCAAC
*
59186 GCGATTTT-AGTTTCGCGTT
1 GCGATTTTCATTTTCGCGTT
** **
59205 GCGATAGTCAAATTCGCGTT
1 GCGATTTTCATTTTCGCGTT
** * *
59225 GCGATAGTCATTTTCGTGCT
1 GCGATTTTCATTTTCGCGTT
*
59245 GCGATTTTCATTTTCGTGTT
1 GCGATTTTCATTTTCGCGTT
59265 GCGATTTT
1 GCGATTTT
59273 AAGTTTCAGA
Statistics
Matches: 56, Mismatches: 11, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
19 6 0.11
20 50 0.89
ACGTcount: A:0.15, C:0.17, G:0.24, T:0.44
Consensus pattern (20 bp):
GCGATTTTCATTTTCGCGTT
Found at i:59279 original size:20 final size:20
Alignment explanation
Indices: 59236--59279 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
59226 CGATAGTCAT
* *
59236 TTTCGTGCTGCGATTTTCAT
1 TTTCGTGCTGCGATTTTAAG
*
59256 TTTCGTGTTGCGATTTTAAG
1 TTTCGTGCTGCGATTTTAAG
59276 TTTC
1 TTTC
59280 AGAAACTATT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.11, C:0.16, G:0.20, T:0.52
Consensus pattern (20 bp):
TTTCGTGCTGCGATTTTAAG
Found at i:61206 original size:20 final size:20
Alignment explanation
Indices: 61183--61229 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
61173 GAAACTTAAA
61183 ATCGCAACGAGAAAATGACT
1 ATCGCAACGAGAAAATGACT
* *
61203 ATCGCAACGCGGAAATGACT
1 ATCGCAACGAGAAAATGACT
61223 ATCGCAA
1 ATCGCAA
61230 TGGGATAATC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.40, C:0.23, G:0.21, T:0.15
Consensus pattern (20 bp):
ATCGCAACGAGAAAATGACT
Found at i:61260 original size:19 final size:20
Alignment explanation
Indices: 61236--61274 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
61226 GCAATGGGAT
*
61236 AATCGCAATGCGAAA-TAAA
1 AATCGCAACGCGAAACTAAA
61255 AATCGCAACGCGAAACTAAA
1 AATCGCAACGCGAAACTAAA
61275 TTCGTGTTGC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.51, C:0.21, G:0.15, T:0.13
Consensus pattern (20 bp):
AATCGCAACGCGAAACTAAA
Found at i:61318 original size:34 final size:33
Alignment explanation
Indices: 61280--61354 Score: 105
Period size: 33 Copynumber: 2.2 Consensus size: 33
61270 CTAAATTCGT
* *
61280 GTTGCGATTTTTATTTTCGCTTTGCGATTTTCAC
1 GTTGCGATTTTTA-TTTCGCATTGCGATTATCAC
* *
61314 GTTGCCATTTTTATTTCGCATTGCGATTATCCC
1 GTTGCGATTTTTATTTCGCATTGCGATTATCAC
61347 GTTGCGAT
1 GTTGCGAT
61355 AGTTAAATTC
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
33 24 0.67
34 12 0.33
ACGTcount: A:0.13, C:0.20, G:0.19, T:0.48
Consensus pattern (33 bp):
GTTGCGATTTTTATTTCGCATTGCGATTATCAC
Found at i:61410 original size:20 final size:20
Alignment explanation
Indices: 61387--61424 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
61377 TCATTTCCGC
61387 GTTGCGATTTTAAGTTTCGT
1 GTTGCGATTTTAAGTTTCGT
61407 GTTGCGATTTTAAGTTTC
1 GTTGCGATTTTAAGTTTC
61425 AGAAACTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.16, C:0.11, G:0.24, T:0.50
Consensus pattern (20 bp):
GTTGCGATTTTAAGTTTCGT
Found at i:61995 original size:21 final size:21
Alignment explanation
Indices: 61900--62002 Score: 82
Period size: 21 Copynumber: 4.9 Consensus size: 21
61890 GCCCGACTCA
*
61900 CCTGTCATCGTTCAAGAGGCA
1 CCTGTCATCGTTCAAGAGGCC
* *
61921 TCT-CCTATCGTTCAAGAGGCC
1 CCTGTC-ATCGTTCAAGAGGCC
* ** * *
61942 CCTATCATCCCTCAAGAGTCT
1 CCTGTCATCGTTCAAGAGGCC
** *
61963 CCTCCCACCGTTCAAGAGGCC
1 CCTGTCATCGTTCAAGAGGCC
*
61984 CCTGTCATCGTTGAAGAGG
1 CCTGTCATCGTTCAAGAGG
62003 TCGCTCCCAC
Statistics
Matches: 60, Mismatches: 20, Indels: 4
0.71 0.24 0.05
Matches are distributed among these distances:
20 1 0.02
21 58 0.97
22 1 0.02
ACGTcount: A:0.21, C:0.34, G:0.20, T:0.24
Consensus pattern (21 bp):
CCTGTCATCGTTCAAGAGGCC
Found at i:62001 original size:42 final size:41
Alignment explanation
Indices: 61900--62022 Score: 138
Period size: 42 Copynumber: 2.9 Consensus size: 41
61890 GCCCGACTCA
* * *
61900 CCTGTCATCGTTCAAGAGGCATCTCCTATCGTTCAAGAGGCC
1 CCTGTCATCGTTCAAGAGTC-TCTCCCACCGTTCAAGAGGCC
* **
61942 CCTATCATCCCTCAAGAGTCTCCTCCCACCGTTCAAGAGGCC
1 CCTGTCATCGTTCAAGAGTCT-CTCCCACCGTTCAAGAGGCC
* * *
61984 CCTGTCATCGTTGAAGAGGTCGCTCCCACCATTCAAGAG
1 CCTGTCATCGTTCAAGA-GTCTCTCCCACCGTTCAAGAG
62023 CCCGATTCAC
Statistics
Matches: 67, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
41 1 0.01
42 63 0.94
43 3 0.04
ACGTcount: A:0.22, C:0.35, G:0.20, T:0.24
Consensus pattern (41 bp):
CCTGTCATCGTTCAAGAGTCTCTCCCACCGTTCAAGAGGCC
Found at i:63550 original size:20 final size:20
Alignment explanation
Indices: 63525--63602 Score: 77
Period size: 20 Copynumber: 3.9 Consensus size: 20
63515 AAGTACACTT
*
63525 TCGCAACGCTAAACTCAAAA
1 TCGCAACGCGAAACTCAAAA
* *
63545 TCGCAATGCGAAAGTCAAAA
1 TCGCAACGCGAAACTCAAAA
* *
63565 TCGCAATGTGAAAGC-CAAAA
1 TCGCAACGCGAAA-CTCAAAA
* *
63585 TCTCAACGCGAAAGTCAA
1 TCGCAACGCGAAACTCAA
63603 TTCGCGTTGC
Statistics
Matches: 47, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
20 47 1.00
ACGTcount: A:0.44, C:0.24, G:0.17, T:0.15
Consensus pattern (20 bp):
TCGCAACGCGAAACTCAAAA
Found at i:63829 original size:20 final size:20
Alignment explanation
Indices: 63641--63831 Score: 223
Period size: 20 Copynumber: 9.8 Consensus size: 20
63631 GCGATTTACT
*
63641 CGTTGCGATAGTCAAATTCT
1 CGTTGCGATAGTCAAATTCG
* *
63661 CGTTGCGATAATCAAATTCA
1 CGTTGCGATAGTCAAATTCG
*
63681 CGTTGCGATAGTCAAATTCA
1 CGTTGCGATAGTCAAATTCG
*
63701 CGTTGTGATAGTCAAATTCG
1 CGTTGCGATAGTCAAATTCG
63721 CGTTGCGATAGTCAAATTCG
1 CGTTGCGATAGTCAAATTCG
* * *
63741 CATTACGATAGTCAAATTCA
1 CGTTGCGATAGTCAAATTCG
*
63761 CGTTACGATAGTCAAATTCG
1 CGTTGCGATAGTCAAATTCG
*
63781 CGTTGCGAT--T----TTTG
1 CGTTGCGATAGTCAAATTCG
* *
63795 CATTGCAATAGTCAAATTCG
1 CGTTGCGATAGTCAAATTCG
*
63815 CGTTGCGATATTCAAAT
1 CGTTGCGATAGTCAAAT
63832 GAATGTGTAA
Statistics
Matches: 146, Mismatches: 19, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
14 10 0.07
16 1 0.01
18 1 0.01
20 134 0.92
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33
Consensus pattern (20 bp):
CGTTGCGATAGTCAAATTCG
Found at i:64025 original size:18 final size:18
Alignment explanation
Indices: 64002--64036 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
63992 AAGCCGGTTG
*
64002 TGATTGGGATTTTGATTT
1 TGATTGCGATTTTGATTT
64020 TGATTGCGATTTTGATT
1 TGATTGCGATTTTGATT
64037 GCCTTTTGCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.17, C:0.03, G:0.26, T:0.54
Consensus pattern (18 bp):
TGATTGCGATTTTGATTT
Found at i:67014 original size:17 final size:17
Alignment explanation
Indices: 66992--67029 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
66982 CGGATGGGGA
66992 AGGATGTCGTTGGATAT
1 AGGATGTCGTTGGATAT
67009 AGGATGTCGTTGGATAT
1 AGGATGTCGTTGGATAT
67026 AGGA
1 AGGA
67030 ACGGATGTCG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.26, C:0.05, G:0.37, T:0.32
Consensus pattern (17 bp):
AGGATGTCGTTGGATAT
Found at i:67038 original size:22 final size:20
Alignment explanation
Indices: 66989--67039 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 20
66979 TGCCGGATGG
66989 GGAAGGATGTCGTTGGATAT
1 GGAAGGATGTCGTTGGATAT
67009 ---AGGATGTCGTTGGATAT
1 GGAAGGATGTCGTTGGATAT
67026 AGGAACGGATGTCG
1 -GGAA-GGATGTCG
67040 CCGGAGAGAG
Statistics
Matches: 26, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
17 17 0.65
21 1 0.04
22 8 0.31
ACGTcount: A:0.25, C:0.08, G:0.39, T:0.27
Consensus pattern (20 bp):
GGAAGGATGTCGTTGGATAT
Found at i:67237 original size:20 final size:20
Alignment explanation
Indices: 67158--67244 Score: 86
Period size: 20 Copynumber: 4.3 Consensus size: 20
67148 GAAATTCAGT
*
67158 GTTGCGATAGTCAGAATCAC
1 GTTGCGATAGTCAGAATCGC
* *
67178 GTTGCGATAGTTAGAATCGT
1 GTTGCGATAGTCAGAATCGC
* * *
67198 GTTGCGAT-TTACATATTCGC
1 GTTGCGATAGT-CAGAATCGC
* *
67218 ATTGCGATAGTCAAAATCGC
1 GTTGCGATAGTCAGAATCGC
67238 GTTGCGA
1 GTTGCGA
67245 ATCTGGAAAC
Statistics
Matches: 52, Mismatches: 13, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
19 1 0.02
20 50 0.96
21 1 0.02
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.31
Consensus pattern (20 bp):
GTTGCGATAGTCAGAATCGC
Found at i:71179 original size:111 final size:111
Alignment explanation
Indices: 70973--71305 Score: 612
Period size: 111 Copynumber: 3.0 Consensus size: 111
70963 TGGAAATCAT
* *
70973 ATATCTCTACACTTTGCTGATACTGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAA
1 ATATCTCGACACTTTGCTGATACGGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAA
*
71038 TATTTAGTTGATTTATTTAATGCATGATTATTAGATTAAGAATTAA
66 TAATTAGTTGATTTATTTAATGCATGATTATTAGATTAAGAATTAA
* * *
71084 ATGTCTCGATATTTTGCTGATACGGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAA
1 ATATCTCGACACTTTGCTGATACGGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAA
71149 TAATTAGTTGATTTATTTAATGCATGATTATTAGATTAAGAATTAA
66 TAATTAGTTGATTTATTTAATGCATGATTATTAGATTAAGAATTAA
71195 ATATCTCGACACTTTGCTGATACGGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAA
1 ATATCTCGACACTTTGCTGATACGGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAA
71260 TAATTAGTTGATTTATTTAATGCATGATTATTAGATTAAGAATTAA
66 TAATTAGTTGATTTATTTAATGCATGATTATTAGATTAAGAATTAA
71306 TTTTTGTAAT
Statistics
Matches: 213, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
111 213 1.00
ACGTcount: A:0.35, C:0.08, G:0.11, T:0.46
Consensus pattern (111 bp):
ATATCTCGACACTTTGCTGATACGGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAA
TAATTAGTTGATTTATTTAATGCATGATTATTAGATTAAGAATTAA
Found at i:72857 original size:27 final size:27
Alignment explanation
Indices: 72827--72889 Score: 90
Period size: 27 Copynumber: 2.3 Consensus size: 27
72817 AGCCATATAT
* *
72827 GATGCCGCTATCGCCTTTCCATTACCA
1 GATGCCGCCATCGCCTTTCAATTACCA
* *
72854 GATGCTGCCATCGCCTTTTAATTACCA
1 GATGCCGCCATCGCCTTTCAATTACCA
72881 GATGCCGCC
1 GATGCCGCC
72890 GCCTTCACCT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.19, C:0.35, G:0.17, T:0.29
Consensus pattern (27 bp):
GATGCCGCCATCGCCTTTCAATTACCA
Found at i:73491 original size:35 final size:32
Alignment explanation
Indices: 73452--73536 Score: 89
Period size: 35 Copynumber: 2.4 Consensus size: 32
73442 ATATTTCAGT
73452 TAATTTTGTTTATTACCATTTAATATCAGTTATTG
1 TAATTTTGTTTATTACCATTTAAT-TC--TTATTG
*
73487 TAATTTGGTTATTATTTACCATTTAATTCTTATTG
1 TAATTTTG-T-TTA-TTACCATTTAATTCTTATTG
*
73522 TAAGTTTGTTGTATT
1 TAATTTTGTT-TATT
73537 TAAATTCCAA
Statistics
Matches: 43, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
33 3 0.07
34 3 0.07
35 19 0.44
36 1 0.02
37 5 0.12
38 12 0.28
ACGTcount: A:0.26, C:0.07, G:0.11, T:0.56
Consensus pattern (32 bp):
TAATTTTGTTTATTACCATTTAATTCTTATTG
Found at i:78717 original size:2 final size:2
Alignment explanation
Indices: 78679--78704 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
78669 AATTACGTGT
78679 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
78705 ACCAACGATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:81956 original size:10 final size:10
Alignment explanation
Indices: 81943--82002 Score: 52
Period size: 10 Copynumber: 6.0 Consensus size: 10
81933 ATTTATAAAA
81943 ATATTTTATT
1 ATATTTTATT
*
81953 ATATTATATT
1 ATATTTTATT
81963 -TA-TTTATT
1 ATATTTTATT
81971 ACTATTATTATT
1 A-TATT-TTATT
*
81983 ATTTTTTATT
1 ATATTTTATT
* *
81993 TTTTTTTATT
1 ATATTTTATT
82003 TTTGCAAGTC
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
8 5 0.12
9 2 0.05
10 25 0.60
11 4 0.10
12 6 0.14
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.72
Consensus pattern (10 bp):
ATATTTTATT
Found at i:81984 original size:19 final size:18
Alignment explanation
Indices: 81947--81991 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 18
81937 ATAAAAATAT
81947 TTTATTATATTATATTTA
1 TTTATTATATTATATTTA
81965 TTTATTACTATTAT-TATTA
1 TTTATTA-TATTATAT-TTA
*
81984 TTTTTTAT
1 TTTATTAT
81992 TTTTTTTTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
18 9 0.38
19 15 0.62
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (18 bp):
TTTATTATATTATATTTA
Found at i:82631 original size:4 final size:4
Alignment explanation
Indices: 82609--82656 Score: 57
Period size: 4 Copynumber: 12.5 Consensus size: 4
82599 TGATAATACA
*
82609 TTAT TTA- TTA- TTAT ATAT TTAT TTAT TTAT TTAT TT-T ATTAT TTAT
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT -TTAT TTAT
82655 TT
1 TT
82657 TTCATTTTTT
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
3 7 0.18
4 31 0.79
5 1 0.03
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (4 bp):
TTAT
Found at i:82657 original size:12 final size:12
Alignment explanation
Indices: 82608--82657 Score: 66
Period size: 12 Copynumber: 4.0 Consensus size: 12
82598 ATGATAATAC
82608 ATTATTTATTATT
1 ATTATTTATT-TT
82621 ATATATTTA-TTT
1 AT-TATTTATTTT
82633 ATTTATTTATTTT
1 A-TTATTTATTTT
82646 ATTATTTATTTT
1 ATTATTTATTTT
82658 TCATTTTTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
12 20 0.59
13 8 0.24
14 6 0.18
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (12 bp):
ATTATTTATTTT
Found at i:84333 original size:18 final size:20
Alignment explanation
Indices: 84296--84333 Score: 53
Period size: 18 Copynumber: 2.0 Consensus size: 20
84286 AAGACGAAGG
84296 CAGAAGACTAGTCAACATAT
1 CAGAAGACTAGTCAACATAT
*
84316 CAGAA-ACT-GTCAAGATAT
1 CAGAAGACTAGTCAACATAT
84334 TTTTGTCTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 9 0.53
19 3 0.18
20 5 0.29
ACGTcount: A:0.45, C:0.18, G:0.16, T:0.21
Consensus pattern (20 bp):
CAGAAGACTAGTCAACATAT
Found at i:87609 original size:19 final size:20
Alignment explanation
Indices: 87580--87617 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
87570 AGAAATTTGT
87580 TGAAGGTGCATCGATGCATA
1 TGAAGGTGCATCGATGCATA
87600 TGAA-GTGCATCGATGCAT
1 TGAAGGTGCATCGATGCAT
87618 TAATTTAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.26
Consensus pattern (20 bp):
TGAAGGTGCATCGATGCATA
Found at i:87660 original size:63 final size:61
Alignment explanation
Indices: 87585--87743 Score: 205
Period size: 63 Copynumber: 2.5 Consensus size: 61
87575 TTTGTTGAAG
* * * *
87585 GTGCATCGATGCATATGAAGTGCATCGATGCATTAATTTAA-ATAAA-AACATCGAATGTCGTCA
1 GTGCATCGATGCATA-GGAGTGCATCGATGCATT--TCTAATA-AAAGAACATCGAATGCCCTCA
87648 GTGCATCGATGCATAAGGAGTGCATCGATGCATTTCTAATAAAATGAACATCGAATGCCCTCA
1 GTGCATCGATGCAT-AGGAGTGCATCGATGCATTTCTAATAAAA-GAACATCGAATGCCCTCA
87711 GTGCATCGATGCATCAGGAGTGCATCGATGCAT
1 GTGCATCGATGCAT-AGGAGTGCATCGATGCAT
87744 GCCTCCATTA
Statistics
Matches: 87, Mismatches: 5, Indels: 8
0.87 0.05 0.08
Matches are distributed among these distances:
61 7 0.08
62 1 0.01
63 78 0.90
64 1 0.01
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.26
Consensus pattern (61 bp):
GTGCATCGATGCATAGGAGTGCATCGATGCATTTCTAATAAAAGAACATCGAATGCCCTCA
Found at i:89083 original size:18 final size:18
Alignment explanation
Indices: 89060--89095 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
89050 AGGAATGATA
89060 TGTGGTCCTTCGGGACAT
1 TGTGGTCCTTCGGGACAT
89078 TGTGGTCCTTCGGGACAT
1 TGTGGTCCTTCGGGACAT
89096 ATATGTATTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.11, C:0.22, G:0.33, T:0.33
Consensus pattern (18 bp):
TGTGGTCCTTCGGGACAT
Found at i:89097 original size:62 final size:62
Alignment explanation
Indices: 89031--89218 Score: 137
Period size: 62 Copynumber: 3.1 Consensus size: 62
89021 TGATCCCTAG
89031 CATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTCGGGACATTGTGGTCCTTCGGGA
1 CATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTCGGGACATTGTGGTCCTTCGGGA
* * * * * *
89093 CATA--TATGT-ATTCTT-TGGAA-CATGTGTGAAGT-CTGGT-GAGACACATACT-TGATCC--
1 CATATGTATATGATTCTTAAGGAATGATATGTG--GTCCT--TCG-G-GACAT--TGTGGTCCTT
**
89148 CTAG-
58 CGGGA
* *
89152 CATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTCGGGACATTGTGGTCTTTTGGGA
1 CATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTCGGGACATTGTGGTCCTTCGGGA
89214 CATAT
1 CATAT
89219 ATGTATTCTT
Statistics
Matches: 89, Mismatches: 18, Indels: 38
0.61 0.12 0.26
Matches are distributed among these distances:
57 6 0.07
58 7 0.08
59 17 0.19
60 12 0.13
61 11 0.12
62 23 0.26
63 7 0.08
64 6 0.07
ACGTcount: A:0.24, C:0.14, G:0.25, T:0.36
Consensus pattern (62 bp):
CATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTCGGGACATTGTGGTCCTTCGGGA
Found at i:89117 original size:121 final size:121
Alignment explanation
Indices: 88958--89320 Score: 647
Period size: 121 Copynumber: 3.0 Consensus size: 121
88948 CGAGGGTCTA
* *
88958 TGTGGT-CATCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGATACATACTT
1 TGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTT
89022 GATCCCTAGCATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTCGGGACAT
66 GATCCCTAGCATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTCGGGACAT
89078 TGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTT
1 TGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTT
89143 GATCCCTAGCATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTCGGGACAT
66 GATCCCTAGCATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTCGGGACAT
* * *
89199 TGTGGTCTTTTGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACGCATACTT
1 TGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTT
* **
89264 GATCCCTAGTATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTATGGACAT
66 GATCCCTAGCATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTCGGGACAT
89320 T
1 T
89321 ATTATATGGC
Statistics
Matches: 234, Mismatches: 8, Indels: 1
0.96 0.03 0.00
Matches are distributed among these distances:
120 6 0.03
121 228 0.97
ACGTcount: A:0.25, C:0.14, G:0.25, T:0.36
Consensus pattern (121 bp):
TGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTT
GATCCCTAGCATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTCGGGACAT
Found at i:89156 original size:59 final size:59
Alignment explanation
Indices: 88972--89156 Score: 134
Period size: 59 Copynumber: 3.1 Consensus size: 59
88962 GTCATCGGGA
*
88972 CATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGATACATACTTGATCCCTAG
1 CATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTTGATCCCTAG
* * * * * *
89031 CATATGTATATGATTCTTAAGGAATGATATGTG--GTCCT--TCG-G-GACAT--TGTGGTCCTT
1 CATA--TATGT-ATTCTT-TGGAA-CATGTGTGAAGT-CTGGT-GAGACACATACT-TGATCC--
**
89088 CGGG
56 CTAG
89092 ACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTTGATCCCTAG
1 -CATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTTGATCCCTAG
89152 CATAT
1 CATAT
89157 GTATATGATT
Statistics
Matches: 91, Mismatches: 16, Indels: 38
0.63 0.11 0.26
Matches are distributed among these distances:
57 6 0.07
58 7 0.08
59 23 0.25
60 12 0.13
61 12 0.13
62 18 0.20
63 7 0.08
64 6 0.07
ACGTcount: A:0.26, C:0.16, G:0.23, T:0.35
Consensus pattern (59 bp):
CATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTTGATCCCTAG
Found at i:89204 original size:18 final size:18
Alignment explanation
Indices: 89181--89216 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
89171 AGGAATGATA
89181 TGTGGTCCTTCGGGACAT
1 TGTGGTCCTTCGGGACAT
* *
89199 TGTGGTCTTTTGGGACAT
1 TGTGGTCCTTCGGGACAT
89217 ATATGTATTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.11, C:0.17, G:0.33, T:0.39
Consensus pattern (18 bp):
TGTGGTCCTTCGGGACAT
Found at i:89355 original size:23 final size:23
Alignment explanation
Indices: 89328--89385 Score: 89
Period size: 23 Copynumber: 2.5 Consensus size: 23
89318 ATTATTATAT
*
89328 GGCACTATGGTGCAATTCTATGC
1 GGCACTACGGTGCAATTCTATGC
*
89351 GGCACTACGGTGCAATTCTATGT
1 GGCACTACGGTGCAATTCTATGC
*
89374 GGCACTTCGGTG
1 GGCACTACGGTG
89386 TATTTATATG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.19, C:0.22, G:0.29, T:0.29
Consensus pattern (23 bp):
GGCACTACGGTGCAATTCTATGC
Found at i:89395 original size:23 final size:23
Alignment explanation
Indices: 89321--89395 Score: 73
Period size: 23 Copynumber: 3.3 Consensus size: 23
89311 TATGGACATT
*
89321 ATTATAT--GGCACTATGGTGCA
1 ATTATATGCGGCACTACGGTGCA
*
89342 ATTCTATGCGGCACTACGGTGCA
1 ATTATATGCGGCACTACGGTGCA
* * * *
89365 ATTCTATGTGGCACTTCGGTGTA
1 ATTATATGCGGCACTACGGTGCA
*
89388 TTTATATG
1 ATTATATG
89396 AGATGTGGTG
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
21 6 0.13
23 39 0.87
ACGTcount: A:0.23, C:0.17, G:0.24, T:0.36
Consensus pattern (23 bp):
ATTATATGCGGCACTACGGTGCA
Found at i:90704 original size:37 final size:37
Alignment explanation
Indices: 90654--90762 Score: 184
Period size: 36 Copynumber: 3.0 Consensus size: 37
90644 TTTCCAAGTT
*
90654 TTGTCTCTCTTGAGACATTTTCCCTTGAAACAAAATA
1 TTGTCTCTCTTGAGACAATTTCCCTTGAAACAAAATA
*
90691 TTGTCTCTCTTGAGACAGTTTCCCTTGAAAC-AAATA
1 TTGTCTCTCTTGAGACAATTTCCCTTGAAACAAAATA
*
90727 TTGCCTCTCTTGAGACAATTTCCCTTGAAACAAAAT
1 TTGTCTCTCTTGAGACAATTTCCCTTGAAACAAAAT
90763 CTTTGAATAT
Statistics
Matches: 68, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
36 34 0.50
37 34 0.50
ACGTcount: A:0.29, C:0.23, G:0.12, T:0.36
Consensus pattern (37 bp):
TTGTCTCTCTTGAGACAATTTCCCTTGAAACAAAATA
Found at i:90884 original size:34 final size:34
Alignment explanation
Indices: 90841--90925 Score: 104
Period size: 31 Copynumber: 2.6 Consensus size: 34
90831 TCTTGAGACA
*
90841 GTTTCTCTTGAAACACAAAAAAACCCTCGAAATT
1 GTTTCTCTTGAAACACAAAAAAACCCTCGAAAAT
* * *
90875 GTTTCTCTTG--A-AGAAAAAAACCTTTGAAAAT
1 GTTTCTCTTGAAACACAAAAAAACCCTCGAAAAT
90906 GTTTCTCTTGAAACATCAAA
1 GTTTCTCTTGAAACA-CAAA
90926 CCTTCGAGTT
Statistics
Matches: 42, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
31 26 0.62
32 1 0.02
33 1 0.02
34 11 0.26
35 3 0.07
ACGTcount: A:0.40, C:0.19, G:0.11, T:0.31
Consensus pattern (34 bp):
GTTTCTCTTGAAACACAAAAAAACCCTCGAAAAT
Found at i:91071 original size:83 final size:83
Alignment explanation
Indices: 90925--91152 Score: 296
Period size: 83 Copynumber: 2.7 Consensus size: 83
90915 GAAACATCAA
* * * **
90925 ACCTTCGAGTTCAACTACGCTCAGCTTCAAGACACATCATTTACAATATAACTCAAGGCTAGAAG
1 ACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTACAGCATAACTCAAGGCTAGAAG
90990 GGTTATCTGCCAACAAAG
66 GGTTATCTGCCAACAAAG
* *
91008 ACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTACAGCATAACTCAGGGTTAGAAG
1 ACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTACAGCATAACTCAAGGCTAGAAG
* *
91073 GGTTATCTGTCAACAAGG
66 GGTTATCTGCCAACAAAG
* * * * * *
91091 AGC-TCAGAGTTCGACTCCACTCAGCTCAAAGGCACCATCATTTGCAGCATAGCTCAAGGCTA
1 ACCTTC-GAGTTCGACTACGCTCAGCTCCAAGGCA-CATCATTTACAGCATAACTCAAGGCTA
91153 TCTGCTAAAG
Statistics
Matches: 126, Mismatches: 17, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
82 2 0.02
83 101 0.80
84 23 0.18
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23
Consensus pattern (83 bp):
ACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTACAGCATAACTCAAGGCTAGAAG
GGTTATCTGCCAACAAAG
Found at i:91377 original size:25 final size:25
Alignment explanation
Indices: 91343--91393 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
91333 TCAAGAAGAA
91343 TGATATCGTGCCCAATGGATCGACT
1 TGATATCGTGCCCAATGGATCGACT
91368 TGATATCGTGCCCAATGGATCGACT
1 TGATATCGTGCCCAATGGATCGACT
91393 T
1 T
91394 AGTGTCACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.29
Consensus pattern (25 bp):
TGATATCGTGCCCAATGGATCGACT
Found at i:91566 original size:3 final size:3
Alignment explanation
Indices: 91543--91598 Score: 80
Period size: 3 Copynumber: 18.7 Consensus size: 3
91533 TCTACAAAAA
91543 TAT T-T TAT TA- TATT TATT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TA-T TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT
91588 TAT TAT TAT TA
1 TAT TAT TAT TA
91599 CATGCCCTAC
Statistics
Matches: 50, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
2 4 0.08
3 40 0.80
4 6 0.12
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:92211 original size:7 final size:7
Alignment explanation
Indices: 92199--92252 Score: 69
Period size: 7 Copynumber: 7.9 Consensus size: 7
92189 ATGATAATAC
92199 ATTATTT
1 ATTATTT
92206 ATTA-TT
1 ATTATTT
92212 ATATATTT
1 AT-TATTT
92220 ATTATTT
1 ATTATTT
92227 ATTTATTT
1 A-TTATTT
92235 A-T-TTT
1 ATTATTT
92240 ATTATTT
1 ATTATTT
92247 ATTATT
1 ATTATT
92253 CATTTTTTCC
Statistics
Matches: 42, Mismatches: 0, Indels: 10
0.81 0.00 0.19
Matches are distributed among these distances:
5 4 0.10
6 6 0.14
7 21 0.50
8 11 0.26
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (7 bp):
ATTATTT
Found at i:92222 original size:4 final size:4
Alignment explanation
Indices: 92200--92249 Score: 54
Period size: 4 Copynumber: 13.2 Consensus size: 4
92190 TGATAATACA
*
92200 TTAT TTA- TTA- TTAT ATAT TTA- TTAT TTAT TTAT TTAT TT-T ATTAT
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT -TTAT
92245 TTAT T
1 TTAT T
92250 ATTCATTTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
3 10 0.25
4 29 0.73
5 1 0.03
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (4 bp):
TTAT
Found at i:92223 original size:11 final size:11
Alignment explanation
Indices: 92207--92249 Score: 54
Period size: 11 Copynumber: 4.1 Consensus size: 11
92197 ACATTATTTA
92207 TTATTATATAT
1 TTATTATATAT
*
92218 TTATTATTTAT
1 TTATTATATAT
92229 TTATT-TAT-T
1 TTATTATATAT
*
92238 TTATTATTTAT
1 TTATTATATAT
92249 T
1 T
92250 ATTCATTTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
9 6 0.22
10 4 0.15
11 17 0.63
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (11 bp):
TTATTATATAT
Found at i:92266 original size:27 final size:28
Alignment explanation
Indices: 92200--92257 Score: 91
Period size: 27 Copynumber: 2.1 Consensus size: 28
92190 TGATAATACA
*
92200 TTATTTATTATTATATATTTATTATTTAT
1 TTATTTATT-TTATATATTTATTATTCAT
92229 TTATTTATTTTAT-TATTTATTATTCAT
1 TTATTTATTTTATATATTTATTATTCAT
92256 TT
1 TT
92258 TTTCCTTTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
27 15 0.54
28 4 0.14
29 9 0.32
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.71
Consensus pattern (28 bp):
TTATTTATTTTATATATTTATTATTCAT
Found at i:106714 original size:2 final size:2
Alignment explanation
Indices: 106707--106734 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
106697 TAATTTTTAA
106707 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
106735 TATGAATTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:111320 original size:23 final size:23
Alignment explanation
Indices: 111285--111329 Score: 74
Period size: 24 Copynumber: 2.0 Consensus size: 23
111275 CTTTTGGATT
111285 TTTTTAAATATATATATTTTTAAC
1 TTTTTAAATATATAT-TTTTTAAC
111309 TTTTTAAA-ATATATTTTTTAA
1 TTTTTAAATATATATTTTTTAA
111330 AATTATATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 7 0.33
23 6 0.29
24 8 0.38
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (23 bp):
TTTTTAAATATATATTTTTTAAC
Found at i:111328 original size:14 final size:15
Alignment explanation
Indices: 111309--111337 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
111299 TATTTTTAAC
111309 TTTTTAAAA-TATAT
1 TTTTTAAAATTATAT
111323 TTTTTAAAATTATAT
1 TTTTTAAAATTATAT
111338 AAATGTGACA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
TTTTTAAAATTATAT
Found at i:112206 original size:65 final size:64
Alignment explanation
Indices: 112097--112252 Score: 206
Period size: 65 Copynumber: 2.4 Consensus size: 64
112087 ATAAGACCTA
* * * * * *
112097 GTGCATCGATACACTAATTACATTTGATGTTTCAAAAGAGTCAGGAGTGCATCGATGCATGGTCT
1 GTGCATCGGTACACAAAATACATTCGACGTTTCAAAAGAATCAGGAGTGCATCGATGCATGGT-T
* *
112162 GTGCATTGGTACATAAAATACATTCGACGTTTCAATAA-AATCAGGAGTGCATCGATGCATGGTT
1 GTGCATCGGTACACAAAATACATTCGACGTTTCAA-AAGAATCAGGAGTGCATCGATGCATGGTT
*
112226 GTGCATCGGTACACAAAATGCATTCGA
1 GTGCATCGGTACACAAAATACATTCGA
112253 ATTAGGGTGT
Statistics
Matches: 79, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
64 25 0.32
65 52 0.66
66 2 0.03
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.29
Consensus pattern (64 bp):
GTGCATCGGTACACAAAATACATTCGACGTTTCAAAAGAATCAGGAGTGCATCGATGCATGGTT
Found at i:113370 original size:65 final size:64
Alignment explanation
Indices: 113261--113416 Score: 215
Period size: 65 Copynumber: 2.4 Consensus size: 64
113251 ATAAGACCTA
* * * * *
113261 GTGCATCGATACACTAATTACATTTGATGTTTCAAAAGAGTCAGGAGTGCATCGATGCATGGTCT
1 GTGCATCGGTACACAAAATACATTCGATGTTTCAAAAGAATCAGGAGTGCATCGATGCATGGT-T
* *
113326 GTGCATTGGTACATAAAATACATTCGATGTTTCAATAA-AATCAGGAGTGCATCGATGCATGGTT
1 GTGCATCGGTACACAAAATACATTCGATGTTTCAA-AAGAATCAGGAGTGCATCGATGCATGGTT
*
113390 GTGCATCGGTACACAAAATGCATTCGA
1 GTGCATCGGTACACAAAATACATTCGA
113417 ATTAGGGTGT
Statistics
Matches: 80, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
64 25 0.31
65 53 0.66
66 2 0.03
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.29
Consensus pattern (64 bp):
GTGCATCGGTACACAAAATACATTCGATGTTTCAAAAGAATCAGGAGTGCATCGATGCATGGTT
Found at i:119182 original size:2 final size:2
Alignment explanation
Indices: 119175--119201 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
119165 TGAGTTGTAA
119175 TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC T
119202 ACTTAGTGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:121455 original size:2 final size:2
Alignment explanation
Indices: 121450--121531 Score: 164
Period size: 2 Copynumber: 41.0 Consensus size: 2
121440 TTCATATGTA
121450 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
121492 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
121532 TATGGAGTCG
Statistics
Matches: 80, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 80 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:122596 original size:29 final size:29
Alignment explanation
Indices: 122551--122608 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
122541 GTATTGGCCG
*
122551 TAGGTCGCCATGCCTTCCGGGCGACCTAC
1 TAGGTCGCCATGCCTTCCCGGCGACCTAC
* *
122580 TAGGTCGCCATGTCTTCCCGGCGAGCTAC
1 TAGGTCGCCATGCCTTCCCGGCGACCTAC
122609 GAGAGATTGC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.14, C:0.36, G:0.28, T:0.22
Consensus pattern (29 bp):
TAGGTCGCCATGCCTTCCCGGCGACCTAC
Found at i:122703 original size:14 final size:14
Alignment explanation
Indices: 122684--122730 Score: 76
Period size: 14 Copynumber: 3.4 Consensus size: 14
122674 GCGAGAGCAT
122684 CCGAGGCCATCCGA
1 CCGAGGCCATCCGA
122698 CCGAGGCCATCCGA
1 CCGAGGCCATCCGA
*
122712 TCGAGGCCATCCGA
1 CCGAGGCCATCCGA
*
122726 GCGAG
1 CCGAG
122731 TTATGCGAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 31 1.00
ACGTcount: A:0.21, C:0.38, G:0.32, T:0.09
Consensus pattern (14 bp):
CCGAGGCCATCCGA
Found at i:122740 original size:23 final size:23
Alignment explanation
Indices: 122713--122762 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
122703 GCCATCCGAT
* *
122713 CGAGGCCATCCGAGCGAGTTATG
1 CGAGGCCAGCCGAGCGAGCTATG
*
122736 CGAGGGCAGCCGAGCGAGCTATG
1 CGAGGCCAGCCGAGCGAGCTATG
122759 CGAG
1 CGAG
122763 AGAATCCGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.22, C:0.26, G:0.40, T:0.12
Consensus pattern (23 bp):
CGAGGCCAGCCGAGCGAGCTATG
Found at i:122771 original size:23 final size:23
Alignment explanation
Indices: 122720--122771 Score: 68
Period size: 23 Copynumber: 2.3 Consensus size: 23
122710 GATCGAGGCC
* * *
122720 ATCCGAGCGAGTTATGCGAGGGC
1 ATCCGAGCGAGCTATGCGAGAGA
*
122743 AGCCGAGCGAGCTATGCGAGAGA
1 ATCCGAGCGAGCTATGCGAGAGA
122766 ATCCGA
1 ATCCGA
122772 AGGCAGCCGA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.27, C:0.23, G:0.37, T:0.13
Consensus pattern (23 bp):
ATCCGAGCGAGCTATGCGAGAGA
Found at i:130010 original size:3 final size:3
Alignment explanation
Indices: 130002--130027 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
129992 AGAGTGACAG
130002 AGA AGA AGA AGA AGA AGA AGA AGA AG
1 AGA AGA AGA AGA AGA AGA AGA AGA AG
130028 GAATAACAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:134217 original size:15 final size:15
Alignment explanation
Indices: 134156--134236 Score: 50
Period size: 13 Copynumber: 5.8 Consensus size: 15
134146 AATTATTATA
134156 TATATATATATAATAT
1 TATATATATATAAT-T
* *
134172 TA-ATAAATTTAATT
1 TATATATATATAATT
* * *
134186 TAAAT-TA-AAAATA
1 TATATATATATAATT
134199 TATATATA-AT-ATT
1 TATATATATATAATT
134212 TATATAT-T-TAATT
1 TATATATATATAATT
*
134225 TAAATATATATA
1 TATATATATATA
134237 TATCCGGCCC
Statistics
Matches: 49, Mismatches: 10, Indels: 13
0.68 0.14 0.18
Matches are distributed among these distances:
12 1 0.02
13 25 0.51
14 8 0.16
15 13 0.27
16 2 0.04
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
TATATATATATAATT
Found at i:134748 original size:20 final size:20
Alignment explanation
Indices: 134723--134777 Score: 101
Period size: 20 Copynumber: 2.8 Consensus size: 20
134713 TTTACACTTA
134723 GGGAACCGATTCCCCATAGG
1 GGGAACCGATTCCCCATAGG
134743 GGGAACCGATTCCCCATAGG
1 GGGAACCGATTCCCCATAGG
*
134763 GGGTACCGATTCCCC
1 GGGAACCGATTCCCC
134778 CCACGCTCCA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.22, C:0.33, G:0.29, T:0.16
Consensus pattern (20 bp):
GGGAACCGATTCCCCATAGG
Found at i:140501 original size:20 final size:21
Alignment explanation
Indices: 140478--140557 Score: 74
Period size: 20 Copynumber: 3.8 Consensus size: 21
140468 TTGGTGCAGA
*
140478 GGGAATCGATCCCCCCATGA-
1 GGGAACCGATCCCCCCATGAG
**
140498 GGGAACCGATTCCCCCTTTGAAG
1 GGGAACCGA-TCCCCCCATG-AG
*
140521 GGGAACCGATTCCCCCAT-AG
1 GGGAACCGATCCCCCCATGAG
*
140541 GGGAATCGATACCCCCC
1 GGGAACCGAT-CCCCCC
140558 TGGGGTTCTG
Statistics
Matches: 48, Mismatches: 8, Indels: 7
0.76 0.13 0.11
Matches are distributed among these distances:
20 19 0.40
21 13 0.27
22 7 0.15
23 9 0.19
ACGTcount: A:0.24, C:0.35, G:0.25, T:0.16
Consensus pattern (21 bp):
GGGAACCGATCCCCCCATGAG
Found at i:143212 original size:21 final size:22
Alignment explanation
Indices: 143172--143226 Score: 103
Period size: 21 Copynumber: 2.5 Consensus size: 22
143162 CTCAGAGGGA
143172 ACCGATTCCCCCCAAGGGGGGT
1 ACCGATTCCCCCCAAGGGGGGT
143194 ACCGATTCCCCCCAA-GGGGGT
1 ACCGATTCCCCCCAAGGGGGGT
143215 ACCGATTCCCCC
1 ACCGATTCCCCC
143227 TGAATGGTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
21 18 0.55
22 15 0.45
ACGTcount: A:0.18, C:0.42, G:0.25, T:0.15
Consensus pattern (22 bp):
ACCGATTCCCCCCAAGGGGGGT
Found at i:149587 original size:19 final size:19
Alignment explanation
Indices: 149563--149606 Score: 88
Period size: 19 Copynumber: 2.3 Consensus size: 19
149553 AGGTGTATCA
149563 ATGCACAGGTAGTGCATTG
1 ATGCACAGGTAGTGCATTG
149582 ATGCACAGGTAGTGCATTG
1 ATGCACAGGTAGTGCATTG
149601 ATGCAC
1 ATGCAC
149607 TCTTTAAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (19 bp):
ATGCACAGGTAGTGCATTG
Found at i:150743 original size:30 final size:31
Alignment explanation
Indices: 150639--150746 Score: 173
Period size: 31 Copynumber: 3.5 Consensus size: 31
150629 AGAGTCGAGG
*
150639 GTTTACCTAGGTTCTTCGGGACCTATGGACC
1 GTTTACCTAGGTTCTTCGGGACCTATGGACA
*
150670 GTTTACCTAGGTCCTTCGGGACCTATGGACA
1 GTTTACCTAGGTTCTTCGGGACCTATGGACA
*
150701 GTTTACCTAGGTTCGTCGGGACCTATGGACA
1 GTTTACCTAGGTTCTTCGGGACCTATGGACA
*
150732 G-TTACCGAGGTTCTT
1 GTTTACCTAGGTTCTT
150747 TATGACCTCT
Statistics
Matches: 71, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
30 12 0.17
31 59 0.83
ACGTcount: A:0.18, C:0.24, G:0.27, T:0.31
Consensus pattern (31 bp):
GTTTACCTAGGTTCTTCGGGACCTATGGACA
Found at i:150754 original size:30 final size:30
Alignment explanation
Indices: 150641--150768 Score: 103
Period size: 31 Copynumber: 4.2 Consensus size: 30
150631 AGTCGAGGGT
* * * *
150641 TTACCTAGGTTCTTCGGGACCTATGGACCG
1 TTACCGAGGTTCGTCAGGACCTATGGACAG
* * * *
150671 TTTACCTAGGTCCTTCGGGACCTATGGACAG
1 -TTACCGAGGTTCGTCAGGACCTATGGACAG
* *
150702 TTTACCTAGGTTCGTCGGGACCTATGGACAG
1 -TTACCGAGGTTCGTCAGGACCTATGGACAG
* * * * *
150733 TTACCGAGGTTCTTTATGACCTCTGGATAG
1 TTACCGAGGTTCGTCAGGACCTATGGACAG
150763 TTACCG
1 TTACCG
150769 GTGTCTTTGT
Statistics
Matches: 86, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
30 29 0.34
31 57 0.66
ACGTcount: A:0.19, C:0.24, G:0.26, T:0.31
Consensus pattern (30 bp):
TTACCGAGGTTCGTCAGGACCTATGGACAG
Found at i:150784 original size:29 final size:30
Alignment explanation
Indices: 150720--150791 Score: 94
Period size: 29 Copynumber: 2.4 Consensus size: 30
150710 GGTTCGTCGG
* *
150720 GACCTATGGACAGTTACCGAGGTTCTTTAT
1 GACCTCTGGATAGTTACCGAGGTTCTTTAT
*
150750 GACCTCTGGATAGTTACC--GGTGTCTTTGT
1 GACCTCTGGATAGTTACCGAGGT-TCTTTAT
150779 GACCTCTGGATAG
1 GACCTCTGGATAG
150792 GTCCTTCGGG
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
28 3 0.08
29 19 0.50
30 16 0.42
ACGTcount: A:0.19, C:0.21, G:0.26, T:0.33
Consensus pattern (30 bp):
GACCTCTGGATAGTTACCGAGGTTCTTTAT
Found at i:154881 original size:31 final size:31
Alignment explanation
Indices: 154843--154938 Score: 147
Period size: 31 Copynumber: 3.1 Consensus size: 31
154833 AGAGTCGAGG
*
154843 GTTTACCTAGGTTTTTCGAGACCTATGGACA
1 GTTTACCTAGGTTTTTCGGGACCTATGGACA
* *
154874 GTTTACCTAGGTTCTTCGGGACCTATGGATA
1 GTTTACCTAGGTTTTTCGGGACCTATGGACA
* *
154905 GTTTACCTAGGTTTGTCGGGACCTATGAACA
1 GTTTACCTAGGTTTTTCGGGACCTATGGACA
154936 GTT
1 GTT
154939 GTCAAGGTTC
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 58 1.00
ACGTcount: A:0.21, C:0.19, G:0.25, T:0.35
Consensus pattern (31 bp):
GTTTACCTAGGTTTTTCGGGACCTATGGACA
Found at i:155301 original size:2 final size:2
Alignment explanation
Indices: 155294--155355 Score: 124
Period size: 2 Copynumber: 31.0 Consensus size: 2
155284 ACATGACATG
155294 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
155336 AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT
155356 GTTATATGGT
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 60 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:157246 original size:24 final size:24
Alignment explanation
Indices: 157202--157251 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
157192 ATAAAGAACC
*
157202 AAAATAAACTTAAATATACCATTA
1 AAAATAAACTTAAACATACCATTA
*
157226 AAAATAAAGTTCAAACA-ACCATTA
1 AAAATAAACTT-AAACATACCATTA
157250 AA
1 AA
157252 TCAACCACCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 19 0.83
25 4 0.17
ACGTcount: A:0.60, C:0.14, G:0.02, T:0.24
Consensus pattern (24 bp):
AAAATAAACTTAAACATACCATTA
Found at i:165898 original size:24 final size:24
Alignment explanation
Indices: 165854--165903 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
165844 ATAAAGAACC
*
165854 AAAATAAACTTAAATATACCATTA
1 AAAATAAACTTAAACATACCATTA
*
165878 AAAATAAAGTTCAAACA-ACCATTA
1 AAAATAAACTT-AAACATACCATTA
165902 AA
1 AA
165904 TCAACCACCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 19 0.83
25 4 0.17
ACGTcount: A:0.60, C:0.14, G:0.02, T:0.24
Consensus pattern (24 bp):
AAAATAAACTTAAACATACCATTA
Found at i:167348 original size:18 final size:18
Alignment explanation
Indices: 167325--167369 Score: 81
Period size: 18 Copynumber: 2.5 Consensus size: 18
167315 GTTCACTTGC
*
167325 TCTACCTCAGAATCAGTG
1 TCTACCTCAAAATCAGTG
167343 TCTACCTCAAAATCAGTG
1 TCTACCTCAAAATCAGTG
167361 TCTACCTCA
1 TCTACCTCA
167370 TGTAAGGTCT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.29, C:0.31, G:0.11, T:0.29
Consensus pattern (18 bp):
TCTACCTCAAAATCAGTG
Found at i:169302 original size:85 final size:85
Alignment explanation
Indices: 169159--169329 Score: 342
Period size: 85 Copynumber: 2.0 Consensus size: 85
169149 TAGCTTTCAG
169159 TTATTAAGTTAGTTATAGAAGTTGTTTGTATATAAATAGGACCTATTTGTTGTAATTGGAGTATT
1 TTATTAAGTTAGTTATAGAAGTTGTTTGTATATAAATAGGACCTATTTGTTGTAATTGGAGTATT
169224 GTAGGAATAAAGTATAATTC
66 GTAGGAATAAAGTATAATTC
169244 TTATTAAGTTAGTTATAGAAGTTGTTTGTATATAAATAGGACCTATTTGTTGTAATTGGAGTATT
1 TTATTAAGTTAGTTATAGAAGTTGTTTGTATATAAATAGGACCTATTTGTTGTAATTGGAGTATT
169309 GTAGGAATAAAGTATAATTC
66 GTAGGAATAAAGTATAATTC
169329 T
1 T
169330 ACCCAAATAT
Statistics
Matches: 86, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
85 86 1.00
ACGTcount: A:0.34, C:0.04, G:0.20, T:0.43
Consensus pattern (85 bp):
TTATTAAGTTAGTTATAGAAGTTGTTTGTATATAAATAGGACCTATTTGTTGTAATTGGAGTATT
GTAGGAATAAAGTATAATTC
Found at i:169850 original size:23 final size:23
Alignment explanation
Indices: 169824--169871 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
169814 ATAAAGTACA
*
169824 ATAACATACTAGGTAGCGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
**
169847 ATAATGTAATAGGTAGCGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
169870 AT
1 AT
169872 TTACCTATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.35, C:0.12, G:0.19, T:0.33
Consensus pattern (23 bp):
ATAACATAATAGGTAGCGCTTAT
Found at i:170323 original size:23 final size:23
Alignment explanation
Indices: 170297--170359 Score: 99
Period size: 23 Copynumber: 2.7 Consensus size: 23
170287 ATATAACCAC
170297 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
* *
170320 TACCTATTACATTATATAAGCGC
1 TACCTATTACATTATATAAACGA
*
170343 TACCTATTACATCATAT
1 TACCTATTACATTATAT
170360 TTTTACCTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:170754 original size:23 final size:23
Alignment explanation
Indices: 170728--170790 Score: 99
Period size: 23 Copynumber: 2.7 Consensus size: 23
170718 ATATAACCAC
170728 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
* *
170751 TACCTATTACATTATATAAGCGC
1 TACCTATTACATTATATAAACGA
*
170774 TACCTATTACATCATAT
1 TACCTATTACATTATAT
170791 TTTTACCTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:170957 original size:429 final size:429
Alignment explanation
Indices: 169938--170992 Score: 2051
Period size: 429 Copynumber: 2.5 Consensus size: 429
169928 TATTACATTA
*
169938 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGGAAT
1 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
170003 TTATGTTTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTC
66 TTATGTTTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTC
170068 ATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTT
131 ATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTT
170133 AATAATAATATATATCGTAACGTAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATC
196 AATAATAATATATATCGTAACGTAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATC
170198 TTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTT
261 TTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTT
170263 TTATAAAAGGATAGACACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTATT
326 TTATAAAAGGATAGACACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTATT
170328 ACATTATATAAGCGCTACCTATTACATCATATTTTTACC
391 ACATTATATAAGCGCTACCTATTACATCATATTTTTACC
170367 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
1 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
170432 TTATGTTTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTC
66 TTATGTTTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTC
170497 ATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTT
131 ATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTT
170562 AATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATAT
196 AATAATAATATATATCGTAACGT-AAAAATAAATCATTAGACGCCTATAATTACTAAATTAATAT
*
170627 CTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACTGTGAAAAAAGTATGGACACT
260 CTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACT
170692 TTTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTA
325 TTTAT-AAAAGGATAGACACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTA
170757 TTACATTATATAAGCGCTACCTATTACATCATATTTTTACC
389 TTACATTATATAAGCGCTACCTATTACATCATATTTTTACC
*
170798 TATTATATTGAAAGTGTCCATACTTTTTATAAAAATGATCGATACTTCTTTTAAAGTTATGTAAT
1 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
170863 TTATGTTTCAA-TTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTC
66 TTATGTTTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTC
170927 ATTTGCACAAAAAATTATTTGATT-TTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTT
131 ATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTT
170991 AA
196 AA
170993 CAACATTAAC
Statistics
Matches: 621, Mismatches: 3, Indels: 4
0.99 0.00 0.01
Matches are distributed among these distances:
429 259 0.42
430 187 0.30
431 175 0.28
ACGTcount: A:0.38, C:0.12, G:0.08, T:0.42
Consensus pattern (429 bp):
TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
TTATGTTTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTC
ATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTT
AATAATAATATATATCGTAACGTAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATC
TTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTT
TTATAAAAGGATAGACACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTATT
ACATTATATAAGCGCTACCTATTACATCATATTTTTACC
Found at i:171264 original size:39 final size:39
Alignment explanation
Indices: 171210--171295 Score: 145
Period size: 39 Copynumber: 2.2 Consensus size: 39
171200 CAAGTTGTAG
*
171210 ATTTTGATTTCCTTTTGCTTGGCATCATATGAGATTTGA
1 ATTTTGATTTCCTTTTGCTTGGCACCATATGAGATTTGA
* *
171249 ATTTTGATTTCCTTTTGCTTGGCACCATATGAGCTTTGG
1 ATTTTGATTTCCTTTTGCTTGGCACCATATGAGATTTGA
171288 ATTTTGAT
1 ATTTTGAT
171296 GAGCATCGGA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 44 1.00
ACGTcount: A:0.19, C:0.14, G:0.19, T:0.49
Consensus pattern (39 bp):
ATTTTGATTTCCTTTTGCTTGGCACCATATGAGATTTGA
Found at i:171576 original size:18 final size:18
Alignment explanation
Indices: 171553--171589 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
171543 CGAAATATAT
171553 ATTGAAATTCAAACTCAA
1 ATTGAAATTCAAACTCAA
* *
171571 ATTGAAATTTAAATTCAA
1 ATTGAAATTCAAACTCAA
171589 A
1 A
171590 CTCCAATTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.51, C:0.11, G:0.05, T:0.32
Consensus pattern (18 bp):
ATTGAAATTCAAACTCAA
Found at i:172053 original size:23 final size:23
Alignment explanation
Indices: 172027--172089 Score: 99
Period size: 23 Copynumber: 2.7 Consensus size: 23
172017 ATATAACCAC
172027 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
* *
172050 TACCTATTACATTATATAAGCGC
1 TACCTATTACATTATATAAACGA
*
172073 TACCTATTACATCATAT
1 TACCTATTACATTATAT
172090 GTTTACCTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:172492 original size:25 final size:25
Alignment explanation
Indices: 172435--172500 Score: 87
Period size: 25 Copynumber: 2.6 Consensus size: 25
172425 CACTCAAAAG
*
172435 ATGTATATACCTAAATATGTAGTTA
1 ATGTACATACCTAAATATGTAGTTA
***
172460 ACAAACATACCTAAATATGTAGTTA
1 ATGTACATACCTAAATATGTAGTTA
*
172485 TTGTACATACCTAAAT
1 ATGTACATACCTAAAT
172501 TTAATGATAA
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.42, C:0.14, G:0.09, T:0.35
Consensus pattern (25 bp):
ATGTACATACCTAAATATGTAGTTA
Found at i:175278 original size:183 final size:182
Alignment explanation
Indices: 174966--175457 Score: 844
Period size: 183 Copynumber: 2.7 Consensus size: 182
174956 TTAAAATTAC
174966 CGACACTTTTTTAAATGGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAAT
1 CGACACTTTTTTAAAT-GTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAAT
*
175031 ATTATAAAGTGTCGATATAGGTTGTAGACCTATTCGC-TCATAAAACCGGTATATTTATACCGGT
65 ATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGT-ATAAAACCGGTATATTTATACCGGT
* *
175095 TATATTATAAAATTATCTATTACATTATAAATCTGGGTTCCGATGTGTAAATGT
129 TATATTACAAAATTATCTATTACATTATAAATATGGGTTCCGATGTGTAAATGT
* *
175149 CGATACTTTTTTAAATCGTATCGACACATTTTTCTTCCAATATGGACATAAAGTACCGACACAAT
1 CGACACTTTTTTAAAT-GTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAAT
*
175214 ATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGTATAAAACTGGTATATTTATACCGGTT
65 ATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGTATAAAACCGGTATATTTATACCGGTT
*
175279 ATATTACAAAATTATCTATTACATTATAATTATGGGTTCCGATGTGTAAATGT
130 ATATTACAAAATTATCTATTACATTATAAATATGGGTTCCGATGTGTAAATGT
* *
175332 CGACACTTTTTAACAATGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAAG
1 CGACACTTTTTTA-AATGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAAT
*
175397 ATTAAAAAGTGTCGATATAGGTTGTAGACCTA-TCGCGCATAAAACCGGTATATTTATACCG
65 ATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGTATAAAACCGGTATATTTATACCG
175458 ATAGCATTGC
Statistics
Matches: 293, Mismatches: 14, Indels: 5
0.94 0.04 0.02
Matches are distributed among these distances:
182 27 0.09
183 262 0.89
184 4 0.01
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.35
Consensus pattern (182 bp):
CGACACTTTTTTAAATGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAATA
TTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGTATAAAACCGGTATATTTATACCGGTTA
TATTACAAAATTATCTATTACATTATAAATATGGGTTCCGATGTGTAAATGT
Found at i:176955 original size:9 final size:9
Alignment explanation
Indices: 176941--177020 Score: 61
Period size: 9 Copynumber: 8.6 Consensus size: 9
176931 CTTGTTTGGA
176941 TCATCATCT
1 TCATCATCT
176950 TCATCATCAT
1 TCATCATC-T
*
176960 CATCATCATCG
1 --TCATCATCT
176971 TCATCATCT
1 TCATCATCT
* *
176980 TCATCGTCA
1 TCATCATCT
* * *
176989 GCTTCATCG
1 TCATCATCT
*
176998 TCATCATCA
1 TCATCATCT
*
177007 TCGTCATCT
1 TCATCATCT
177016 TCATC
1 TCATC
177021 GTCATCTTCA
Statistics
Matches: 54, Mismatches: 14, Indels: 6
0.73 0.19 0.08
Matches are distributed among these distances:
9 45 0.83
10 1 0.02
12 8 0.15
ACGTcount: A:0.23, C:0.34, G:0.06, T:0.38
Consensus pattern (9 bp):
TCATCATCT
Found at i:176957 original size:12 final size:12
Alignment explanation
Indices: 176944--177044 Score: 121
Period size: 12 Copynumber: 8.4 Consensus size: 12
176934 GTTTGGATCA
* *
176944 TCATCTTCATCA
1 TCATCGTCATCT
* *
176956 TCATCATCATCA
1 TCATCGTCATCT
* *
176968 TCGTCATCATCT
1 TCATCGTCATCT
*
176980 TCATCGTCAGCT
1 TCATCGTCATCT
*
176992 TCATCGTCATCA
1 TCATCGTCATCT
177004 TCATCGTCATCT
1 TCATCGTCATCT
177016 TCATCGTCATCT
1 TCATCGTCATCT
*
177028 TCATCGTCAGCT
1 TCATCGTCATCT
177040 TCATC
1 TCATC
177045 TTCTGCGACC
Statistics
Matches: 79, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 79 1.00
ACGTcount: A:0.21, C:0.34, G:0.08, T:0.38
Consensus pattern (12 bp):
TCATCGTCATCT
Found at i:177047 original size:6 final size:6
Alignment explanation
Indices: 176944--177047 Score: 91
Period size: 6 Copynumber: 17.3 Consensus size: 6
176934 GTTTGGATCA
* * * * * * *
176944 TCATCT TCATCA TCATCA TCATCA TCGTCA TCATCT TCATCG TCAGCT
1 TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT
* * * * * *
176992 TCATCG TCATCA TCATCG TCATCT TCATCG TCATCT TCATCG TCAGCT
1 TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT
177040 TCATCT TC
1 TCATCT TC
177048 TGCGACCGCT
Statistics
Matches: 80, Mismatches: 18, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
6 80 1.00
ACGTcount: A:0.20, C:0.34, G:0.08, T:0.38
Consensus pattern (6 bp):
TCATCT
Done.