genome.fa.s4096.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004096.1 Hibiscus syriacus cultivar Beakdansim tig00008957_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  961865

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 546 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
827762--827867	34	3.2	33	82	8	133	54	4	2	37	1.36
828136--828206	32	2.2	32	82	7	81	35	12	2	49	1.56
828248--829097	126	6.8	126	98	1	1633	32	19	26	21	1.97
828248--829097	250	3.4	252	98	1	1633	32	19	26	21	1.97
828248--829097	376	2.3	374	98	1	1625	32	19	26	21	1.97
829165--829205	8	5.2	8	82	5	57	36	29	0	34	1.58
832200--832239	13	3.2	13	89	7	64	45	0	0	55	0.99
833005--833075	2	35.5	2	100	0	142	50	0	0	49	1.00
840451--840479	2	14.5	2	100	0	58	48	0	0	51	1.00
841157--841211	24	2.4	23	85	8	69	16	32	3	47	1.64
841173--841219	24	2.0	24	95	0	85	14	31	10	42	1.80
841173--841230	24	2.4	24	88	0	71	12	32	12	43	1.79
844304--844390	30	2.9	29	86	6	120	29	31	3	35	1.74
846309--846344	12	3.0	12	87	0	54	36	5	22	36	1.78
851365--851589	64	3.5	64	81	6	217	31	21	20	26	1.98
851897--851931	12	2.9	12	91	0	61	25	5	31	37	1.80
851948--852021	29	2.6	29	97	2	141	43	16	21	18	1.88
855385--855419	18	1.9	18	88	0	52	42	0	2	54	1.15
856138--856206	20	3.4	20	76	11	77	30	27	18	23	1.98
857027--857080	24	2.2	24	93	0	90	20	18	20	40	1.91
859323--859357	18	1.9	18	94	0	61	54	25	2	17	1.57
859417--859686	140	1.9	140	98	0	522	28	14	15	41	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
859657--859861	20	10.9	20	74	12	191	33	20	19	26	1.97
859657--859901	74	3.3	74	88	1	330	35	20	18	25	1.95
859900--859957	20	2.9	21	82	10	77	12	17	27	43	1.84
860056--860117	14	4.3	14	77	6	61	46	14	0	38	1.45
861502--861616	21	5.5	21	72	6	81	22	17	35	24	1.95
861502--861620	42	2.8	42	80	2	132	23	16	35	24	1.95
862111--862178	20	3.5	20	81	2	84	36	25	20	17	1.94
862170--862249	33	2.4	33	85	0	97	47	22	18	11	1.80
862259--862354	33	2.8	33	71	3	84	17	20	20	40	1.91
862326--862374	20	2.5	20	96	0	89	14	22	26	36	1.92
864223--864325	20	5.2	20	82	4	120	40	24	16	18	1.90
864223--864314	39	2.3	40	83	7	116	43	25	16	15	1.86
864894--864987	20	4.7	20	79	7	100	24	15	26	32	1.96
864954--865021	20	3.3	21	75	6	59	30	20	17	30	1.96
867365--867408	18	2.4	18	100	0	88	50	29	4	15	1.64
877935--877998	29	2.2	29	78	13	69	34	3	6	56	1.40
887157--887290	55	2.4	55	87	8	175	53	0	1	44	1.15
887172--887290	55	2.2	54	91	5	188	55	0	0	42	1.11
887287--887319	16	2.0	17	88	5	50	60	0	0	39	0.97
887280--887330	12	4.3	12	76	18	54	64	0	0	35	0.94
897263--897315	23	2.4	22	81	9	63	50	3	3	41	1.38
897558--897635	31	2.6	29	76	13	86	46	1	8	43	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
914879--914927	21	2.3	21	96	0	89	36	16	28	18	1.92
915197--915256	3	20.0	3	92	0	102	0	36	0	63	0.95
915618--915642	13	1.9	13	100	0	50	64	0	8	28	1.22
923088--923116	15	1.9	15	100	0	58	24	13	27	34	1.93
932624--932688	23	2.8	23	72	9	69	29	23	24	23	1.99
933719--933764	20	2.3	20	92	0	83	21	28	0	50	1.49
934278--934337	20	2.9	21	85	7	86	18	26	23	31	1.97
937478--937527	18	2.9	17	80	8	57	40	26	2	32	1.67
937848--937938	23	4.0	23	89	0	128	24	24	29	21	1.99
937955--938167	103	2.1	103	92	0	354	36	23	13	26	1.92
941453--941508	27	2.1	27	100	0	112	7	5	17	69	1.31
941464--941522	27	2.1	27	81	3	64	5	10	18	66	1.40
942481--942519	20	2.1	19	90	9	62	25	15	30	28	1.96
944617--944686	31	2.3	31	92	0	122	32	11	18	37	1.87
952961--953023	30	2.1	30	90	0	99	33	9	11	46	1.72
953327--953405	28	2.9	27	78	9	90	40	3	11	44	1.58
953484--953785	74	4.4	69	80	8	330	37	7	14	40	1.74
953484--953754	144	1.9	141	93	3	463	37	7	15	40	1.74
953759--953890	26	4.9	26	73	13	115	35	9	15	40	1.79
953743--953915	81	2.2	80	95	1	310	36	8	15	39	1.76
954624--954682	25	2.4	25	80	8	59	61	11	0	27	1.31
958872--958987	56	2.1	57	93	1	198	51	12	10	25	1.70

Tables:   1   2   3   4   5

The End!