genome.fa.s4097.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004097.1 Hibiscus syriacus cultivar Beakdansim tig00008959_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83924

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8152--8176	2	12.5	2	100	0	50	52	0	0	48	1.00
9467--9506	21	1.9	21	94	0	71	52	0	7	40	1.30
10497--10535	3	13.0	3	100	0	78	66	0	0	33	0.92
10685--10771	43	2.0	43	97	0	165	34	19	9	36	1.84
10699--10766	21	3.2	21	64	4	55	36	20	7	35	1.81
13356--13422	24	2.7	25	88	2	100	23	26	20	28	1.99
22678--22750	24	3.0	22	78	11	65	23	2	4	69	1.18
25059--25107	18	2.7	18	100	0	98	22	16	24	36	1.94
28069--28136	24	2.9	23	76	12	66	58	7	4	29	1.45
28067--28137	23	3.0	23	71	17	65	56	8	4	30	1.48
35044--35068	13	1.9	13	100	0	50	40	12	8	40	1.72
43476--43529	20	2.6	21	80	14	58	1	24	7	66	1.27
44031--44076	14	3.5	13	80	13	51	56	2	2	39	1.24
44031--44078	25	1.9	25	83	8	62	56	2	2	39	1.23
44229--44804	40	13.7	41	71	15	298	25	19	32	23	1.97
44235--44774	128	4.2	128	95	0	933	25	19	31	23	1.98
44236--44775	82	6.4	87	72	15	316	25	19	31	23	1.98
45158--45253	36	2.7	36	79	10	108	40	12	16	30	1.86
45497--45534	15	2.5	15	91	0	58	50	7	21	21	1.74
45523--45597	31	2.4	30	82	8	80	40	13	14	32	1.85
45630--45709	40	2.0	40	87	4	117	38	11	20	30	1.87
45691--45814	63	2.0	62	85	1	167	41	11	16	30	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45982--46191	67	3.2	64	83	8	237	43	11	11	32	1.78
46047--46172	37	3.6	37	68	23	103	44	10	11	33	1.75
46036--46192	67	2.4	66	92	3	262	43	10	11	33	1.76
46089--46223	32	4.1	32	73	10	112	41	12	9	36	1.76
46209--46312	52	2.0	53	92	3	174	36	18	13	31	1.89
46308--46431	29	4.4	28	82	7	144	47	15	8	28	1.75
46323--46428	56	1.9	54	84	7	140	45	16	9	28	1.79
46670--46767	36	2.8	35	81	3	117	33	12	19	34	1.89
46671--46789	36	3.4	36	80	6	111	35	12	21	30	1.91
46784--46973	105	1.8	105	87	2	283	37	11	19	31	1.87
46947--47083	36	3.8	36	76	5	143	36	11	18	32	1.88
47426--47482	18	3.1	19	82	10	73	26	0	21	52	1.47
47426--47482	4	15.2	4	82	14	77	26	0	21	52	1.47
47767--47811	24	1.9	24	90	4	74	46	4	8	40	1.55
49299--49369	20	3.0	24	69	22	78	40	11	23	23	1.87
49286--49360	20	3.5	20	70	20	62	37	10	25	26	1.89
49296--49375	26	3.3	26	68	20	82	42	10	23	23	1.84
49284--49377	46	2.1	45	91	2	152	38	9	25	26	1.87
50567--50628	32	2.0	32	96	3	117	61	9	14	14	1.57
52137--52180	22	2.0	22	81	0	52	52	15	4	27	1.63
53841--53894	20	2.6	21	80	14	58	1	24	7	66	1.27
54396--54441	14	3.5	13	80	13	51	56	2	2	39	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54396--54443	25	1.9	25	83	8	62	56	2	2	39	1.23
58219--58281	21	3.0	21	88	2	92	44	28	11	15	1.81
58554--58665	41	2.8	40	86	6	158	50	24	2	22	1.61
58554--58662	37	2.8	38	87	6	148	50	23	2	22	1.62
68357--68391	2	17.5	2	100	0	70	51	0	0	48	1.00
71508--71567	23	2.7	23	84	5	79	53	16	15	15	1.74
71820--71893	2	38.0	2	94	5	134	48	0	0	51	1.00
74096--74148	10	5.0	10	78	13	52	43	3	5	47	1.45
75304--75358	15	3.8	15	75	18	53	50	1	0	47	1.11
75308--75359	13	3.9	14	77	22	58	48	1	0	50	1.12
75990--76343	124	2.9	120	84	5	462	25	16	24	34	1.95

Tables:   1

The End!