Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004098.1 Hibiscus syriacus cultivar Beakdansim tig00008963_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  102862

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10230--10254
12
2.1
12
100
0
50
32
8
8
52
1.60
19288--19358
29
2.4
29
97
0
133
30
15
12
40
1.85
24042--24123
29
2.8
29
94
1
137
31
14
12
41
1.83
37542--37584
18
2.2
20
84
8
54
30
0
2
67
1.03
41968--42031
2
32.0
2
100
0
128
50
0
0
50
1.00
48292--48419
21
6.2
21
77
3
152
21
17
25
34
1.96
48288--48565
41
6.7
41
72
19
238
22
19
25
33
1.97
48313--48385
20
3.6
20
77
3
83
15
20
24
39
1.91
48292--48492
52
3.4
62
72
16
165
23
18
25
32
1.97
48426--48492
21
3.2
21
91
4
100
23
19
28
28
1.98
48370--48471
52
2.0
52
92
3
170
25
19
25
29
1.99
48374--48564
73
2.6
73
94
0
321
23
19
25
30
1.98
48498--48565
21
3.3
20
71
8
57
16
22
26
35
1.94
48662--48775
20
5.6
20
73
4
111
39
27
21
12
1.89
48659--48800
41
3.5
41
90
3
223
38
26
19
16
1.92
48659--48804
21
7.1
21
69
7
102
38
26
19
15
1.92
53076--53141
3
22.0
3
81
6
80
37
0
0
62
0.96
58565--58596
15
2.1
15
94
0
55
25
18
9
46
1.79
60628--60653
12
2.2
12
100
0
52
15
26
23
34
1.94
65942--66039
1
98.0
1
69
0
61
84
1
14
0
0.67
65944--66039
7
13.7
7
84
10
117
84
1
14
0
0.68
66371--66415
19
2.6
17
82
10
56
31
6
8
53
1.58
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
67263--67334
35
2.1
35
100
0
144
40
15
11
33
1.82
67452--67629
92
1.9
93
91
3
297
29
15
21
33
1.94
68314--69066
113
6.8
113
86
5
842
37
15
18
28
1.91
69314--69379
3
22.0
3
84
6
89
39
0
0
60
0.97
70761--70808
23
2.0
24
88
4
71
41
0
0
58
0.98
76438--76558
64
1.9
63
86
5
172
35
22
17
24
1.95
77258--77300
2
21.5
2
100
0
86
48
0
0
51
1.00
77762--77810
21
2.2
21
82
13
55
36
2
18
42
1.62
78183--78249
23
2.9
23
80
8
82
19
25
23
31
1.98
83127--83195
23
3.0
23
80
0
84
18
24
24
31
1.98
84834--84878
22
2.2
19
84
11
54
33
31
8
26
1.87
84872--84961
32
2.9
30
85
6
126
28
23
22
25
1.99
93596--93623
3
9.3
3
100
0
56
67
32
0
0
0.91
95999--96031
2
16.5
2
93
0
57
48
3
0
48
1.17

Tables:   1

The End!