Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004099.1 Hibiscus syriacus cultivar Beakdansim tig00008964_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46711

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
733--1021
143
2.0
144
92
7
491
32
8
28
30
1.87
1071--1115
22
2.1
21
91
4
72
60
2
0
37
1.09
2947--2984
2
19.0
2
100
0
76
50
0
0
50
1.00
6059--6137
19
3.9
19
76
12
86
21
20
24
34
1.97
6230--6269
6
6.7
6
100
0
80
35
47
17
0
1.48
7016--7213
42
4.8
42
93
1
328
36
18
21
23
1.95
8043--8084
2
21.5
2
95
4
77
50
0
0
50
1.00
8812--8872
21
2.8
23
78
16
67
65
4
1
27
1.22
8913--9023
39
2.8
39
83
12
156
45
0
18
34
1.56
9025--9113
6
15.2
6
81
16
62
59
0
0
40
0.97
9026--9110
14
7.1
12
85
11
63
60
0
0
40
0.97
9039--9105
2
34.5
2
88
5
102
55
0
0
44
0.99
10505--10545
2
20.5
2
94
0
73
46
0
0
53
1.00
11313--11438
40
3.2
39
68
19
116
40
2
7
50
1.43
13448--13510
23
2.6
24
78
19
60
50
1
0
47
1.10
13482--13528
22
2.1
23
88
4
69
44
2
0
53
1.12
13476--13555
32
2.5
32
78
14
83
47
3
0
48
1.19
13631--13704
27
2.5
30
82
16
93
51
0
0
48
1.00
13650--13705
21
2.7
20
81
10
58
51
0
0
48
1.00
13656--13705
11
4.6
11
75
12
50
50
0
0
50
1.00
13700--13745
24
2.0
24
82
4
58
52
2
2
43
1.25
14447--14484
5
7.6
5
100
0
76
0
39
0
60
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18994--19027
17
2.0
17
100
0
68
35
0
23
41
1.55
26759--26800
17
2.5
17
78
21
52
40
0
0
59
0.97
26765--26801
16
2.3
16
90
9
58
40
0
0
59
0.97
28567--28870
82
3.7
81
80
11
321
35
18
19
26
1.95
28567--28891
42
7.8
41
77
12
231
34
17
19
28
1.95
28774--28934
41
4.0
40
83
6
182
35
14
17
32
1.90
28775--28955
41
4.4
41
80
8
174
35
14
17
32
1.91
28774--28934
82
2.0
82
85
7
220
35
14
17
32
1.90
28774--28967
83
2.3
81
78
11
198
36
13
17
32
1.89
29000--29297
41
7.2
41
80
4
321
27
19
18
34
1.95
31967--32147
43
4.2
43
85
2
211
31
20
20
26
1.98
31967--32147
87
2.1
86
84
3
229
31
20
20
26
1.98
35057--35118
27
2.3
27
86
5
81
25
6
0
67
1.14
38835--38922
39
2.3
39
93
0
149
38
18
22
20
1.93
40475--40525
20
2.5
21
81
9
61
29
21
21
27
1.99
43983--44021
20
2.0
20
85
14
55
25
5
5
64
1.35

Tables:   1

The End!