Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000041.1 Hibiscus syriacus cultivar Beakdansim tig00000063_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67723

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
450--478
2
15.0
2
92
7
51
48
0
0
51
1.00
619--711
38
2.4
39
91
5
163
31
5
40
22
1.76
5771--5858
39
2.3
39
95
0
158
35
4
39
20
1.73
5789--5855
21
3.3
21
64
19
61
38
1
37
22
1.63
6333--6371
20
2.0
20
89
0
60
38
5
15
41
1.69
6383--6421
20
2.0
20
84
0
51
35
2
15
46
1.60
6332--6479
53
2.9
52
91
5
239
33
5
12
49
1.63
6436--6475
20
2.0
20
90
0
62
37
5
10
47
1.59
11032--11070
20
2.0
20
89
0
60
38
5
15
41
1.69
11031--11180
53
2.9
52
93
3
257
35
5
11
48
1.62
11084--11176
20
5.0
20
68
21
67
37
4
10
47
1.58
20472--20507
16
2.3
15
90
4
54
41
0
5
52
1.24
20637--20693
15
3.7
15
77
9
69
22
35
26
15
1.94
20731--20768
16
2.3
16
90
4
58
26
34
26
13
1.93
21283--21331
2
26.0
2
84
12
68
48
2
0
48
1.12
24356--24826
235
2.0
235
99
0
933
39
15
13
31
1.86
28209--28240
12
2.6
13
85
14
50
40
15
0
43
1.47
32338--32364
4
6.8
4
100
0
54
22
0
0
77
0.76
33175--33211
12
3.1
12
96
0
65
10
40
8
40
1.70
46855--46891
17
2.1
19
90
10
60
67
8
5
18
1.36
55061--55546
243
2.0
243
97
0
911
34
14
24
26
1.94
58063--58184
36
3.4
37
83
7
144
36
3
15
44
1.63
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58070--58131
21
3.3
19
70
25
51
38
3
14
43
1.62
60959--61000
18
2.4
17
84
7
57
26
11
35
26
1.91
60970--61004
18
1.9
18
100
0
70
22
11
34
31
1.90
62140--62200
28
2.2
28
100
0
122
36
29
9
24
1.88
62646--62706
21
3.2
21
65
29
64
32
3
21
42
1.69
62639--62757
35
3.3
36
87
6
161
33
3
19
43
1.67

Tables:   1

The End!