Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000410.1 Hibiscus syriacus cultivar Beakdansim tig00000756_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90420

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11769--11834
31
2.1
31
88
5
98
40
13
6
39
1.69
20875--20901
13
2.1
13
100
0
54
14
18
7
59
1.58
28177--28242
31
2.1
31
88
5
98
40
13
6
39
1.69
32163--32244
40
2.0
40
97
0
155
23
15
26
34
1.95
32349--32474
47
2.8
45
84
5
155
40
7
23
29
1.81
33337--33499
30
5.4
30
95
0
281
32
22
20
25
1.98
33337--33524
90
2.1
91
88
1
279
33
22
19
23
1.97
33654--34959
4
327.2
4
99
0
2591
49
25
0
25
1.50
35295--35366
2
36.5
2
97
2
137
51
0
0
48
1.00
35870--35907
20
1.9
20
88
0
58
10
31
34
23
1.89
35935--35977
21
2.0
21
81
0
50
18
25
27
27
1.98
41678--41721
21
2.1
21
100
0
88
34
15
18
31
1.92
43478--43531
17
3.2
17
72
0
54
31
0
3
64
1.11
45063--45106
21
2.1
21
86
0
61
25
38
11
25
1.89
45114--45228
21
5.5
21
87
4
160
17
31
28
22
1.97
45751--45847
33
2.9
34
87
3
133
57
4
2
36
1.29
45749--45854
34
3.2
33
86
2
140
56
4
1
36
1.31
46250--46605
128
2.8
128
95
0
640
33
21
23
21
1.97
46502--46709
104
2.0
104
96
0
380
31
23
25
20
1.98
46374--46832
232
2.0
232
95
0
828
32
22
24
20
1.98
46913--46953
8
5.2
8
82
5
57
36
29
0
34
1.58
61258--61298
16
2.6
16
88
3
57
29
21
12
36
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61441--61465
3
8.3
3
100
0
50
68
0
0
32
0.90
77949--77973
2
12.5
2
100
0
50
52
0
0
48
1.00
81445--81526
30
2.7
31
82
3
112
28
25
12
34
1.92
85191--85253
31
2.0
31
90
0
99
33
14
26
25
1.94

Tables:   1

The End!