genome.fa.s4100.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004100.1 Hibiscus syriacus cultivar Beakdansim tig00008965_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  138271

Tables:   1   

This is table  1  of  1  ( 91 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
315--362	19	2.6	19	93	3	80	56	10	2	31	1.45
2047--2112	33	2.0	33	90	0	105	22	48	0	28	1.51
2146--2189	21	2.1	21	91	0	70	18	31	9	40	1.81
4400--4442	20	2.3	18	85	14	61	20	16	11	51	1.75
4428--4761	156	2.1	157	86	3	456	28	17	14	40	1.88
4888--5371	229	2.2	224	93	3	832	39	8	7	44	1.63
5617--5641	11	2.3	11	100	0	50	36	24	8	32	1.84
7737--7778	20	2.1	20	86	0	57	30	4	0	64	1.14
11537--11580	22	2.0	22	82	8	54	38	2	0	59	1.10
12200--12282	22	3.7	22	78	9	71	39	1	3	55	1.25
23341--23369	4	7.2	4	100	0	58	24	0	24	51	1.48
25220--25309	45	2.0	45	97	0	171	43	16	13	26	1.85
27077--27515	224	2.0	218	87	4	639	34	17	18	28	1.94
31619--31689	30	2.4	30	77	17	76	59	2	12	25	1.47
40077--40169	21	4.6	20	78	4	96	38	18	24	18	1.92
40074--40169	41	2.3	41	98	0	183	39	17	23	18	1.92
40077--40169	20	4.6	20	78	4	96	38	18	24	18	1.92
40096--40230	41	3.3	41	81	6	123	37	20	21	20	1.94
40158--40251	20	4.7	20	80	2	89	34	24	18	23	1.96
40774--40818	19	2.4	19	92	0	72	48	26	15	8	1.74
40814--41017	19	11.1	19	78	13	194	12	21	21	44	1.85
40814--40922	58	1.9	57	90	1	173	12	19	21	46	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40819--41017	33	5.4	38	78	13	161	12	21	21	44	1.85
40960--41017	20	2.9	20	80	10	64	13	24	18	43	1.87
43679--43715	14	2.6	14	86	0	56	48	21	0	29	1.50
43304--46280	588	5.1	588	97	1	5546	37	19	11	31	1.88
45407--45443	14	2.6	14	86	0	56	48	21	0	29	1.50
43578--46280	569	4.7	573	97	2	4974	37	19	11	31	1.87
45995--46031	14	2.6	14	86	0	56	48	21	0	29	1.50
47901--47967	19	3.5	19	83	4	89	37	23	23	14	1.93
47956--48043	14	5.9	14	76	23	90	46	26	18	9	1.78
47940--48048	31	3.5	31	96	2	191	45	24	19	10	1.81
48055--48150	19	5.6	17	72	21	78	11	19	22	45	1.82
48077--48134	14	3.9	14	79	16	71	8	17	25	48	1.75
48060--48150	32	2.8	33	94	3	166	10	18	23	47	1.80
48135--48178	20	2.2	20	84	4	54	18	22	20	38	1.93
48662--48706	18	2.5	18	85	0	63	15	15	42	26	1.87
50025--50062	20	1.9	20	88	0	58	50	21	15	13	1.78
50326--50368	21	2.0	21	95	0	77	18	16	44	20	1.87
50556--50649	20	4.7	20	80	2	89	23	18	24	34	1.96
50576--50711	41	3.3	42	78	5	118	20	20	20	38	1.94
50536--50650	20	5.7	20	78	5	88	23	17	23	35	1.95
50639--50731	21	4.6	20	79	4	105	18	23	18	39	1.92
50639--50734	41	2.3	41	96	0	174	18	22	17	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53132--53172	18	2.3	18	95	0	73	36	7	19	36	1.80
53244--53400	32	4.9	31	70	18	92	35	19	15	29	1.92
54511--54607	48	2.0	48	88	4	142	28	19	18	32	1.96
55551--55576	13	2.0	13	100	0	52	46	15	7	30	1.74
69360--69386	2	13.5	2	100	0	54	48	0	0	51	1.00
69962--70012	5	10.8	5	89	4	63	37	1	0	60	1.08
70953--70981	14	2.1	14	100	0	58	44	6	34	13	1.71
82764--82809	17	2.9	16	84	15	60	30	0	0	69	0.89
84438--84484	13	3.6	13	80	8	51	51	2	0	46	1.13
88061--88133	3	24.0	3	82	13	87	65	2	0	31	1.06
88474--88551	40	2.0	39	92	2	129	23	17	35	23	1.95
88335--88762	134	3.2	132	86	7	557	24	18	31	25	1.98
88961--89034	31	2.4	31	84	6	89	40	13	17	28	1.87
89225--89349	65	1.9	66	86	3	182	45	11	13	29	1.78
89165--89357	66	3.0	62	74	11	165	44	12	13	29	1.81
89299--89544	29	8.3	29	66	15	110	43	13	12	30	1.81
89338--89484	61	2.4	62	89	2	226	42	13	12	30	1.82
89225--89517	151	1.9	153	87	4	430	43	12	12	31	1.81
89467--89558	28	3.2	27	77	14	87	47	14	13	25	1.79
89695--90001	105	2.9	104	84	3	384	40	12	15	30	1.85
89968--90064	35	2.7	36	88	1	142	36	13	18	31	1.90
94113--94174	32	1.9	32	86	0	88	58	11	14	16	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97439--97505	3	22.0	3	81	14	75	65	2	0	31	1.07
97449--97505	21	2.7	21	91	2	87	66	3	0	29	1.08
100341--100385	23	2.0	23	86	8	65	24	11	24	40	1.87
100426--100476	3	17.3	3	76	11	52	60	0	0	39	0.97
100879--100930	24	2.2	24	85	0	68	9	15	26	48	1.76
100889--100930	14	3.3	14	75	25	56	7	14	26	52	1.67
100889--100937	24	2.0	24	100	0	98	8	14	24	53	1.68
100895--100950	24	2.3	24	90	0	85	12	10	19	57	1.64
101972--102068	16	6.1	16	92	0	167	9	12	21	56	1.63
102138--102170	16	2.1	16	100	0	66	6	12	24	57	1.57
103039--103098	20	3.0	21	85	4	79	31	25	20	23	1.98
103098--103160	25	2.9	22	78	19	69	31	6	30	31	1.83
103134--103170	19	1.9	19	100	0	74	37	5	29	27	1.79
103497--103543	21	2.2	21	88	0	67	34	21	23	21	1.97
103508--103554	21	2.2	21	92	0	76	29	25	23	21	1.99
103553--103593	21	2.0	21	90	4	66	31	9	29	29	1.89
111438--111469	17	1.9	17	93	6	57	21	18	0	59	1.38
114493--114519	2	13.5	2	100	0	54	48	0	0	51	1.00
115171--115205	17	2.1	17	100	0	70	60	17	0	22	1.37
117221--117273	27	2.0	27	100	0	106	64	11	3	20	1.42
118548--118577	2	15.0	2	100	0	60	50	0	0	50	1.00
118756--118803	2	24.0	2	100	0	96	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
133428--133468	2	20.5	2	100	0	82	48	0	0	51	1.00
133501--133622	60	2.0	60	80	3	138	29	16	18	36	1.92
137080--137107	3	9.3	3	100	0	56	32	0	0	67	0.91

Tables:   1

The End!