genome.fa.s4101.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004101.1 Hibiscus syriacus cultivar Beakdansim tig00008969_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  191148

Tables:   1   

This is table  1  of  1  ( 97 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5788--5874	44	1.9	46	90	4	142	45	2	5	45	1.39
5830--6010	33	5.2	34	81	13	174	46	2	6	44	1.41
5830--6041	33	6.3	33	76	20	140	45	1	7	45	1.42
5720--6047	104	3.1	106	78	16	321	44	2	7	46	1.44
5598--5983	211	1.8	213	83	9	527	44	3	7	44	1.49
6905--6958	12	4.6	12	81	11	67	29	0	0	70	0.88
6905--6966	23	2.7	24	82	9	76	27	1	0	70	0.96
7010--7062	10	5.4	10	82	13	74	18	7	1	71	1.19
7002--7129	30	4.4	29	78	14	113	17	6	3	72	1.20
14931--14994	31	2.1	30	85	2	83	35	7	6	50	1.57
16148--16173	2	13.0	2	100	0	52	50	0	0	50	1.00
16321--16375	22	2.5	21	82	8	74	38	7	1	52	1.40
16313--16375	23	2.8	23	75	18	69	38	6	1	53	1.36
16333--16390	22	2.4	26	86	11	79	41	5	0	53	1.23
16313--16377	22	2.9	21	76	19	69	40	6	1	52	1.36
27239--27306	21	3.2	21	74	12	66	44	27	2	25	1.68
27444--27556	60	1.9	60	81	3	138	31	22	7	38	1.81
30718--30756	17	2.3	17	95	0	69	25	28	33	12	1.93
30996--31037	14	2.8	16	82	14	61	64	0	0	35	0.94
32138--32237	32	2.9	34	85	10	132	16	9	34	41	1.79
32836--32882	18	2.7	18	90	3	69	27	31	6	34	1.82
37584--37983	159	2.5	160	84	5	483	48	6	16	28	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37638--37983	159	2.2	158	88	4	502	50	6	15	27	1.70
39050--39088	21	1.9	19	90	10	60	17	2	7	71	1.21
46656--46686	10	3.1	10	90	0	53	61	16	9	12	1.56
46751--46823	27	2.8	26	77	6	69	65	21	5	6	1.37
51296--51427	61	2.2	61	86	2	185	35	13	15	34	1.87
58445--58473	2	14.5	2	100	0	58	48	0	0	51	1.00
58464--58659	35	5.3	37	81	7	220	43	3	6	45	1.47
58544--58700	71	2.3	65	85	9	165	43	3	5	47	1.45
58551--58760	37	5.9	36	78	15	108	43	4	6	45	1.50
59972--60018	20	2.3	20	79	17	53	25	2	4	68	1.19
61246--61279	17	1.9	18	88	5	52	5	11	8	73	1.24
61900--61944	19	2.4	19	92	3	74	11	13	8	66	1.44
65275--65787	85	6.2	84	87	2	621	30	25	21	22	1.99
66416--66609	35	5.2	37	81	7	216	43	3	6	45	1.47
66463--66668	65	3.0	66	80	13	172	42	4	7	45	1.53
67922--67969	21	2.3	21	79	13	55	25	2	4	68	1.18
71768--71831	30	2.2	29	89	10	96	31	4	9	54	1.53
72750--72819	34	2.1	34	91	2	115	42	10	11	35	1.74
72835--72897	31	2.1	28	85	8	81	52	11	4	31	1.58
78123--78168	24	2.0	24	83	8	60	52	0	0	47	1.00
78151--78205	22	2.5	23	80	14	71	49	1	1	47	1.23
78230--78308	33	2.5	31	76	8	88	51	2	3	41	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78281--78350	23	3.3	23	68	20	62	50	0	1	48	1.09
80104--80160	4	14.2	4	88	0	69	26	7	22	43	1.78
93301--93330	6	5.2	6	92	8	53	16	0	0	83	0.65
93302--93327	11	2.4	11	100	0	52	15	0	0	84	0.62
101491--101521	15	2.1	15	93	0	53	45	0	0	54	0.99
104537--104591	24	2.2	24	83	3	74	21	23	18	36	1.95
108214--108280	2	33.5	2	100	0	134	49	0	0	50	1.00
109708--109740	13	2.5	13	90	9	50	72	12	3	12	1.23
114057--114085	11	2.7	11	94	5	51	17	17	6	58	1.59
114158--114186	13	2.2	13	100	0	58	20	17	41	20	1.90
114234--114280	23	2.0	23	87	0	67	23	14	38	23	1.92
115201--115237	19	1.9	19	88	0	56	32	0	0	67	0.91
115881--115946	15	3.8	17	76	11	55	72	1	7	18	1.15
116013--116054	17	2.4	18	84	7	52	71	0	2	26	0.98
116014--116084	22	3.3	22	73	15	60	66	0	4	29	1.11
116206--116265	31	2.0	30	86	3	84	68	1	8	21	1.25
116211--116348	31	4.2	31	71	19	82	66	1	6	25	1.24
116258--116308	24	2.1	24	85	7	68	62	0	3	33	1.13
116317--116363	23	2.0	23	84	15	62	70	0	2	27	0.99
117634--118803	106	11.0	106	92	0	1806	22	18	24	34	1.96
120393--120440	14	3.4	14	83	11	62	0	12	6	81	0.87
125158--125210	10	4.4	13	77	20	53	71	0	1	26	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
125171--125327	60	2.6	59	75	15	137	65	2	4	27	1.25
125927--126011	37	2.3	37	83	0	98	31	10	14	43	1.79
129318--129372	20	2.9	18	81	10	65	29	14	12	43	1.82
135284--135367	21	3.9	21	72	14	64	14	25	36	23	1.92
139175--139214	21	1.9	21	85	10	55	35	10	2	52	1.48
142041--142114	26	2.9	24	78	15	69	47	20	1	31	1.59
144811--144865	20	2.8	20	97	0	101	36	16	16	30	1.91
155738--155782	22	2.0	22	87	12	65	40	2	0	57	1.11
158270--158299	14	2.1	14	93	0	51	50	6	0	43	1.28
159505--159536	9	3.7	9	91	8	57	12	0	0	87	0.54
159500--159534	8	4.5	8	85	7	54	11	0	0	88	0.51
161315--161340	6	4.3	6	100	0	52	19	34	30	15	1.93
168123--168204	28	3.0	28	67	3	76	46	9	21	21	1.80
168243--168289	24	2.0	24	91	0	76	29	2	10	57	1.44
168243--168292	13	4.0	13	82	10	59	30	2	12	56	1.47
168954--168992	12	3.3	12	82	7	53	33	0	7	58	1.26
177523--177907	41	9.4	41	84	3	443	26	17	20	35	1.95
177523--177885	166	2.2	164	84	3	451	27	18	19	34	1.95
177523--177907	125	3.1	123	82	6	422	26	17	20	35	1.95
180179--180258	36	2.2	36	95	0	142	30	15	17	37	1.90
181125--181182	20	2.8	20	81	5	62	18	5	20	55	1.62
182096--182142	25	1.9	25	86	4	69	29	25	12	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
182149--182257	31	3.5	31	76	7	121	35	20	17	26	1.94
184438--184588	43	3.5	43	93	0	248	27	23	22	25	2.00
184438--184613	43	4.1	43	90	0	244	26	23	21	28	1.99
184779--184818	2	21.0	2	90	10	66	52	0	0	47	1.00
185148--185528	193	2.0	194	94	0	674	26	23	24	25	2.00
186218--186391	31	5.6	31	95	0	312	39	22	18	18	1.92
189701--189736	6	6.3	6	87	12	58	83	0	0	16	0.65
189701--189736	11	3.3	11	100	0	72	83	0	0	16	0.65
190294--190351	29	2.0	30	86	10	84	41	18	13	25	1.88

Tables:   1

The End!