genome.fa.s4102.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004102.1 Hibiscus syriacus cultivar Beakdansim tig00008970_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59397

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1638--1818	78	2.4	75	81	4	202	17	22	22	37	1.94
1638--1818	39	4.7	39	76	6	181	17	22	22	37	1.94
7714--7905	39	4.9	39	88	0	276	17	27	23	32	1.96
8277--8308	2	16.0	2	100	0	64	50	0	0	50	1.00
12578--12657	40	2.0	40	100	0	160	22	15	25	37	1.93
22409--22471	14	4.9	13	67	18	51	41	1	7	49	1.42
22363--22631	37	7.1	38	84	9	300	44	3	7	44	1.48
22386--22631	76	3.3	73	87	6	314	46	3	7	42	1.48
25224--25255	7	4.6	7	96	0	55	31	15	0	53	1.43
30353--30386	15	2.3	15	89	0	50	41	0	50	8	1.34
31279--31420	43	3.3	43	82	5	137	25	16	23	33	1.96
31305--31429	43	2.9	44	83	4	157	26	16	24	32	1.96
31304--31442	43	3.2	42	76	9	129	26	18	24	30	1.98
31869--31908	21	1.9	21	89	0	62	0	40	17	42	1.49
34412--34518	42	2.6	41	76	7	108	33	21	15	28	1.94
35716--35941	41	5.5	41	78	9	196	29	19	16	34	1.94
35727--35955	124	1.8	124	81	8	286	30	19	17	32	1.95
35741--35955	41	5.2	41	81	7	215	30	19	17	32	1.95
35929--36042	41	2.8	41	74	12	126	25	20	21	32	1.98
36538--36571	9	3.6	9	92	8	50	8	2	0	88	0.62
36555--36587	13	2.5	13	90	0	57	6	6	3	84	0.84
36537--36579	19	2.3	19	83	0	59	11	2	2	83	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45809--45929	64	1.9	63	84	5	163	35	21	18	24	1.95
50794--50915	60	2.0	61	82	7	151	55	1	4	37	1.31
50794--50915	30	4.0	30	78	11	115	55	1	4	37	1.31
51874--51919	18	2.6	19	86	13	71	39	0	10	50	1.38
54439--54498	2	30.5	2	96	3	113	50	0	0	50	1.00
55093--55160	19	3.4	20	76	11	68	42	10	0	47	1.37
55095--55160	21	3.3	21	77	8	75	42	10	0	46	1.38
56480--56528	24	2.0	24	84	0	62	10	6	0	83	0.80
56508--56555	25	1.9	25	83	8	62	16	10	2	70	1.24
56760--56795	19	1.9	19	88	5	56	47	8	22	22	1.77
56941--57004	31	2.0	33	82	11	80	50	4	0	45	1.22
58871--59012	45	3.2	44	94	3	241	30	23	6	38	1.80
59240--59337	30	3.3	30	64	22	80	28	24	11	35	1.90
59072--59390	58	5.5	58	83	6	351	28	22	11	37	1.89
59030--59397	116	3.2	118	79	8	373	29	22	11	36	1.89

Tables:   1

The End!