Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004103.1 Hibiscus syriacus cultivar Beakdansim tig00008972_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67719

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1144--1186
19
2.3
18
80
7
50
32
11
0
55
1.36
1203--1311
29
3.8
29
78
7
105
40
7
0
51
1.36
1340--1412
27
2.6
28
79
16
87
54
1
8
35
1.39
1356--1428
27
3.0
23
71
22
60
50
1
9
38
1.44
1531--1641
27
4.0
29
75
8
88
52
3
9
34
1.52
2164--2202
20
1.9
21
89
5
62
38
10
0
51
1.36
6632--6662
14
2.2
14
94
0
53
45
12
12
29
1.80
9254--9278
5
5.0
5
100
0
50
20
0
0
80
0.72
9478--9597
62
1.9
63
89
5
190
50
15
8
25
1.72
13936--13990
24
2.3
24
93
3
94
29
25
16
29
1.97
16385--16429
9
4.6
10
79
20
51
62
2
0
35
1.08
16384--16421
19
2.0
19
90
10
60
60
5
0
34
1.19
20219--20275
21
2.9
19
68
12
53
19
19
22
38
1.93
20347--20389
6
7.5
6
94
2
63
27
53
16
2
1.55
20895--20937
6
7.2
6
97
0
68
4
11
48
34
1.60
21030--21151
42
2.9
42
91
0
190
36
23
18
21
1.94
21083--21246
65
2.6
63
87
3
215
35
23
18
21
1.95
21139--21231
40
2.2
42
88
7
136
35
24
19
20
1.96
21055--21256
21
9.6
21
72
10
137
35
24
18
21
1.96
21034--21224
107
1.8
105
92
4
323
36
23
17
21
1.95
23679--23705
14
1.9
14
100
0
54
44
0
11
44
1.39
31977--32018
2
21.0
2
100
0
84
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32328--32386
24
2.5
24
100
0
118
33
3
3
59
1.31
34360--34425
15
4.3
15
74
11
53
59
4
13
22
1.53
35570--35760
104
1.8
104
83
6
253
24
14
26
35
1.93
35699--36118
220
1.9
220
84
1
556
26
14
25
34
1.94
35950--36295
159
2.2
159
89
1
523
25
14
26
34
1.94
35950--36342
159
2.5
159
85
3
434
25
14
26
33
1.94
37035--37262
83
2.7
84
85
5
282
26
17
23
32
1.96
37619--37685
24
2.9
22
75
16
71
49
4
11
34
1.60
38946--39027
40
2.0
40
100
0
164
32
26
17
23
1.96
44072--44108
6
6.2
6
93
0
65
29
35
18
16
1.93
46037--46198
40
4.1
40
96
0
306
33
26
17
22
1.96
50877--50924
2
24.0
2
100
0
96
50
0
0
50
1.00
57544--57599
20
2.7
21
94
2
96
26
41
19
12
1.87
65994--66020
10
2.7
10
100
0
54
44
0
0
55
0.99

Tables:   1

The End!