genome.fa.s4104.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004104.1 Hibiscus syriacus cultivar Beakdansim tig00008977_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67091

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3--71	34	2.0	35	97	2	131	21	31	28	17	1.96
3741--3892	30	5.0	30	91	3	243	39	21	19	19	1.93
4442--4509	34	2.0	34	91	5	111	22	29	27	20	1.98
10205--10302	45	2.2	44	80	12	112	29	21	21	27	1.98
13122--13161	20	2.0	20	90	4	64	40	0	30	30	1.57
13280--13336	2	28.5	2	96	0	105	50	1	0	47	1.11
25238--25393	65	2.4	64	91	5	244	30	23	16	30	1.96
26523--26567	23	2.0	23	86	0	63	26	28	24	20	1.99
26546--26849	149	2.0	149	98	0	590	34	20	17	27	1.95
27726--27760	18	1.9	18	88	11	54	22	17	5	54	1.64
28343--28387	21	2.1	21	87	0	63	15	24	28	31	1.96
31812--31845	17	2.0	17	94	0	59	41	26	0	32	1.56
32597--33042	220	2.0	225	97	2	857	34	12	14	37	1.84
34257--34283	7	3.9	7	100	0	54	40	0	0	59	0.98
34361--34399	11	3.4	12	89	10	64	30	0	0	69	0.89
35518--35552	16	2.2	16	90	5	54	28	5	2	62	1.32
35792--35884	2	51.5	2	78	19	107	48	0	0	51	1.00
35792--35884	9	10.3	10	80	18	107	48	0	0	51	1.00
35797--35895	25	4.0	24	79	15	80	45	0	0	54	0.99
40936--40986	19	2.7	19	96	0	93	25	29	21	23	1.99
41078--41170	41	2.3	41	96	0	132	40	17	23	18	1.90
41078--41170	21	4.6	20	78	4	96	40	17	23	18	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41105--41231	41	3.1	41	80	6	116	37	20	22	19	1.94
41159--41273	20	5.7	20	82	6	115	31	26	18	24	1.97
41156--41293	41	3.4	41	79	6	154	34	24	17	23	1.96
41456--41499	22	2.0	22	90	0	70	20	43	15	20	1.88
43139--43183	18	2.5	18	88	0	72	26	44	15	13	1.83
43665--43717	20	2.7	20	90	0	79	39	24	20	15	1.91
43704--43796	32	2.8	33	91	3	161	46	20	19	13	1.84
43720--43777	14	3.9	14	77	16	62	48	22	17	12	1.80
43806--43877	19	3.7	19	85	3	99	13	23	23	38	1.91
45868--45916	19	2.6	19	93	0	89	51	16	18	14	1.77
45952--46009	20	2.9	20	97	0	107	15	22	24	37	1.93
47065--47118	24	2.2	24	90	0	81	24	16	20	38	1.92
49582--49708	33	3.8	33	87	4	193	43	19	22	14	1.88
49583--49715	66	2.0	66	95	0	239	42	19	21	16	1.89
49708--49750	20	2.2	20	87	4	61	16	18	23	41	1.89
49736--49769	14	2.4	14	85	0	50	8	23	20	47	1.78
49891--49927	14	2.6	14	91	0	65	45	24	0	29	1.53
51317--51395	42	1.9	42	84	2	106	22	17	37	21	1.94
53400--53458	20	3.0	19	78	9	64	44	18	23	13	1.86
53449--53485	14	2.6	14	95	0	65	40	24	24	10	1.87
53425--53518	47	2.0	48	89	2	145	38	25	24	11	1.89
53509--53597	19	4.7	19	90	5	144	46	22	20	11	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53462--53537	33	2.3	33	83	0	107	40	27	21	10	1.86
53509--53597	37	2.4	37	92	3	142	46	22	20	11	1.82
53598--53658	19	3.1	19	78	4	68	8	16	22	52	1.70
53603--53655	19	2.7	19	88	2	70	9	18	24	47	1.78
54175--54227	20	2.7	20	93	0	88	26	20	28	24	1.99
54236--54289	20	2.7	20	94	0	90	25	20	24	29	1.99
54176--54292	61	1.9	61	83	0	153	23	18	24	32	1.97
54176--54310	61	2.2	61	80	2	146	22	20	24	31	1.98
58872--58897	3	8.7	3	100	0	52	30	0	0	69	0.89
60284--60528	63	3.8	63	77	13	259	48	11	11	28	1.74
60260--60524	131	2.0	130	88	7	394	48	11	12	27	1.75
62063--62127	30	2.2	30	91	0	103	26	35	24	13	1.93
62163--62193	7	4.4	7	95	0	53	45	0	54	0	0.99
62223--62261	19	2.1	19	90	0	60	23	23	30	23	1.99
62944--62996	19	2.7	20	82	8	63	52	5	3	37	1.43
64055--64096	14	2.9	15	82	13	52	69	4	0	26	1.08

Tables:   1

The End!