genome.fa.s4106.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004106.1 Hibiscus syriacus cultivar Beakdansim tig00008980_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56349

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1647--1671	12	2.1	12	100	0	50	0	28	0	72	0.86
1845--1898	24	2.2	24	90	0	81	42	18	14	24	1.88
2640--2690	20	2.5	20	96	0	93	31	19	29	19	1.97
2903--2952	19	2.5	20	96	3	93	32	28	24	16	1.96
2978--3042	19	3.7	19	86	13	95	13	21	18	46	1.84
5032--5117	20	4.3	20	74	12	61	44	23	16	16	1.86
5107--5164	14	3.9	14	76	24	64	46	24	18	10	1.80
5091--5169	32	2.4	33	91	2	124	46	22	18	11	1.81
5176--5269	14	5.7	18	69	22	80	12	19	22	45	1.83
5181--5269	31	2.8	32	89	5	144	12	17	22	47	1.81
5254--5308	20	2.8	19	83	8	65	16	23	23	36	1.94
5785--5829	18	2.5	18	88	0	72	13	15	44	26	1.83
7148--7189	20	2.1	20	86	0	57	50	21	16	11	1.77
7157--7205	20	2.5	20	89	0	71	36	26	18	18	1.94
7469--7512	22	2.0	22	95	0	79	18	15	45	20	1.85
7694--7745	20	2.6	20	90	0	77	23	21	30	25	1.99
7754--7807	20	2.7	20	97	0	99	25	18	24	31	1.97
7673--7810	61	2.3	61	84	0	186	23	17	24	34	1.96
7673--7828	61	2.6	61	81	2	152	22	19	24	33	1.97
11876--11937	31	2.0	31	100	0	124	25	29	12	32	1.93
13316--13396	38	2.2	38	95	2	146	11	11	39	38	1.76
13130--13544	222	1.9	218	90	3	670	24	11	26	37	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13026--13599	222	2.6	219	81	9	652	23	10	27	38	1.88
14220--14265	18	2.8	16	83	6	56	28	30	4	36	1.76
14896--14958	29	2.3	28	79	15	69	49	3	0	47	1.17
15016--15045	11	2.7	11	100	0	60	0	0	43	56	0.99
17422--17490	21	3.2	22	72	24	65	26	15	26	31	1.96
18292--18386	46	2.1	46	91	0	154	33	13	12	40	1.83
20664--20714	21	2.4	21	100	0	102	29	15	25	29	1.96
21342--21387	21	2.2	21	84	0	56	23	10	28	36	1.89
21376--21465	23	4.1	22	74	14	69	22	21	26	30	1.99
21388--21465	23	3.5	23	77	11	90	19	23	28	29	1.98
27224--27283	20	2.9	22	76	18	74	31	10	26	31	1.89
27253--27302	20	2.5	20	83	6	57	34	12	26	28	1.92
27906--28007	21	4.8	21	66	17	50	24	16	25	33	1.96
28846--28886	20	2.0	20	100	0	82	26	24	29	19	1.98
35389--35448	20	2.9	22	76	18	74	31	10	26	31	1.89
35418--35467	20	2.5	20	83	6	57	34	12	26	28	1.92
39661--39761	45	2.3	44	83	8	116	27	18	24	28	1.98
45539--45580	20	2.1	20	95	0	75	14	19	42	23	1.87
45567--45755	65	2.9	65	83	7	192	30	15	22	31	1.95
45611--45774	65	2.5	64	80	4	177	31	15	22	31	1.95
47318--47368	16	3.2	16	97	0	93	15	25	27	31	1.96
49625--50044	54	7.8	54	87	2	578	35	21	17	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49631--49713	27	3.1	27	68	25	75	33	24	18	24	1.96
49871--49956	27	3.2	26	66	18	68	34	22	18	24	1.96
50020--50127	56	1.9	56	96	0	198	39	12	15	31	1.86
50238--50323	45	1.9	45	80	4	102	47	11	17	23	1.80
54745--54802	30	1.9	30	92	0	98	41	6	10	41	1.66
55242--55290	18	2.6	19	78	18	57	63	0	0	36	0.95
55311--55428	61	1.9	61	91	3	193	55	0	0	44	1.05
55311--55454	61	2.3	64	83	10	190	56	1	0	41	1.07

Tables:   1

The End!