Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01004107.1 Hibiscus syriacus cultivar Beakdansim tig00008985_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56527
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
Found at i:7326 original size:21 final size:21
Alignment explanation
Indices: 7302--7371 Score: 54
Period size: 21 Copynumber: 3.2 Consensus size: 21
7292 TCATTCGAGA
7302 CATTTATATGGAACTTCGGTG
1 CATTTATATGGAACTTCGGTG
* *
7323 CATTCAT-TCGCG-TCTTCGGTG
1 CATTTATAT-G-GAACTTCGGTG
* *
7344 TATTTCTACGTGGAACTTCGGTG
1 CATTTATA--TGGAACTTCGGTG
7367 CATTT
1 CATTT
7372 TATACGAGTT
Statistics
Matches: 36, Mismatches: 7, Indels: 10
0.68 0.13 0.19
Matches are distributed among these distances:
20 1 0.03
21 19 0.53
22 2 0.06
23 13 0.36
24 1 0.03
ACGTcount: A:0.17, C:0.20, G:0.23, T:0.40
Consensus pattern (21 bp):
CATTTATATGGAACTTCGGTG
Found at i:12811 original size:30 final size:29
Alignment explanation
Indices: 12770--12841 Score: 89
Period size: 25 Copynumber: 2.6 Consensus size: 29
12760 GTGAAAGTGA
12770 AAGTGTTCAAAGCAAAGTTAATGAGATTGG
1 AAGTG-TCAAAGCAAAGTTAATGAGATTGG
12800 AAGTGT----GCAAAGTTAATGAGATTGG
1 AAGTGTCAAAGCAAAGTTAATGAGATTGG
*
12825 AAGTGTGCAAAGTAAAG
1 AAGTGT-CAAAGCAAAG
12842 AAAATAACAA
Statistics
Matches: 36, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
25 25 0.69
29 1 0.03
30 10 0.28
ACGTcount: A:0.40, C:0.06, G:0.29, T:0.25
Consensus pattern (29 bp):
AAGTGTCAAAGCAAAGTTAATGAGATTGG
Found at i:12815 original size:25 final size:25
Alignment explanation
Indices: 12781--12837 Score: 114
Period size: 25 Copynumber: 2.3 Consensus size: 25
12771 AGTGTTCAAA
12781 GCAAAGTTAATGAGATTGGAAGTGT
1 GCAAAGTTAATGAGATTGGAAGTGT
12806 GCAAAGTTAATGAGATTGGAAGTGT
1 GCAAAGTTAATGAGATTGGAAGTGT
12831 GCAAAGT
1 GCAAAGT
12838 AAAGAAAATA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.37, C:0.05, G:0.32, T:0.26
Consensus pattern (25 bp):
GCAAAGTTAATGAGATTGGAAGTGT
Found at i:16158 original size:37 final size:37
Alignment explanation
Indices: 16108--16181 Score: 130
Period size: 37 Copynumber: 2.0 Consensus size: 37
16098 AGCAGTATCA
*
16108 TCAACACCTCCCCTATCACAATCTAACTCATCCTGTT
1 TCAACACCTCCCCTATCACAATCTAACCCATCCTGTT
*
16145 TCAACACCTCCCCTATCACAATCTAACCCGTCCTGTT
1 TCAACACCTCCCCTATCACAATCTAACCCATCCTGTT
16182 CTGCAACATC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.26, C:0.42, G:0.04, T:0.28
Consensus pattern (37 bp):
TCAACACCTCCCCTATCACAATCTAACCCATCCTGTT
Found at i:16201 original size:39 final size:37
Alignment explanation
Indices: 16108--16201 Score: 107
Period size: 37 Copynumber: 2.5 Consensus size: 37
16098 AGCAGTATCA
** *
16108 TCAACACCTCCCCTATCACAATCTAACTCATCCTGTT
1 TCAACACCTCCAATATCACAATCTAACCCATCCTGTT
** *
16145 TCAACACCTCCCCTATCACAATCTAACCCGTCCTGTT
1 TCAACACCTCCAATATCACAATCTAACCCATCCTGTT
*
16182 CTGCAACATCTCCAATATCA
1 -T-CAACACCTCCAATATCA
16202 TCAAGACAAA
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
37 35 0.70
38 1 0.02
39 14 0.28
ACGTcount: A:0.28, C:0.40, G:0.04, T:0.28
Consensus pattern (37 bp):
TCAACACCTCCAATATCACAATCTAACCCATCCTGTT
Found at i:16246 original size:12 final size:12
Alignment explanation
Indices: 16229--16291 Score: 63
Period size: 12 Copynumber: 5.2 Consensus size: 12
16219 AACTACATTT
*
16229 TCAGCAACACTC
1 TCAGCAACACCC
* **
16241 TCAGCAGCACAA
1 TCAGCAACACCC
*
16253 TCAACAACACCC
1 TCAGCAACACCC
16265 TCAGCAACACCC
1 TCAGCAACACCC
**
16277 TCAGTTACACCC
1 TCAGCAACACCC
16289 TCA
1 TCA
16292 CTAGCACCCT
Statistics
Matches: 41, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
12 41 1.00
ACGTcount: A:0.35, C:0.43, G:0.08, T:0.14
Consensus pattern (12 bp):
TCAGCAACACCC
Found at i:20327 original size:19 final size:20
Alignment explanation
Indices: 20298--20351 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 20
20288 AAACTGTATA
*
20298 ATATATTATATTTTCAAAAT
1 ATATATAATATTTTCAAAAT
*
20318 -TATATAATATGTTTTCAATAT
1 ATATATAATA--TTTTCAAAAT
20339 ATATATATATATT
1 ATATATA-ATATT
20352 ACATATTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
19 8 0.29
21 11 0.39
22 6 0.21
23 3 0.11
ACGTcount: A:0.43, C:0.04, G:0.02, T:0.52
Consensus pattern (20 bp):
ATATATAATATTTTCAAAAT
Found at i:20441 original size:22 final size:21
Alignment explanation
Indices: 20408--20609 Score: 155
Period size: 22 Copynumber: 9.3 Consensus size: 21
20398 CTATATAACA
*
20408 ATATGTTTTTAAAAATTATACT
1 ATATATTTTTAAAAATTATA-T
* *
20430 ATGTATTTTTAAAAACTATAT
1 ATATATTTTTAAAAATTATAT
**
20451 AGTATATGTTTTTTAAATT-TAT
1 A-TATAT-TTTTAAAAATTATAT
20473 ATAATATGTTTTCAAAAATTATACT
1 AT-ATAT-TTTT-AAAAATTATA-T
*
20498 ATATATTTTT-AAAACTATACT
1 ATATATTTTTAAAAATTATA-T
*
20519 ATATATTTTAAAAAATTATAT
1 ATATATTTTTAAAAATTATAT
*
20540 ATTATATGTTTTTAAAAACTATATT
1 A-TATA--TTTTTAAAAATTATA-T
* *
20565 ATATATTTTCAAAAACTATAT
1 ATATATTTTTAAAAATTATAT
20586 AT-TA--TTT-AAAATTATAT
1 ATATATTTTTAAAAATTATAT
20603 ATTATAT
1 A-TATAT
20610 ATAATCATCT
Statistics
Matches: 149, Mismatches: 17, Indels: 30
0.76 0.09 0.15
Matches are distributed among these distances:
17 10 0.07
18 3 0.02
19 2 0.01
20 2 0.01
21 27 0.18
22 60 0.40
23 17 0.11
24 23 0.15
25 5 0.03
ACGTcount: A:0.43, C:0.04, G:0.03, T:0.50
Consensus pattern (21 bp):
ATATATTTTTAAAAATTATAT
Found at i:20545 original size:24 final size:23
Alignment explanation
Indices: 20376--20590 Score: 153
Period size: 22 Copynumber: 9.4 Consensus size: 23
20366 TCAAAAACTA
* *
20376 TATATATTATATGTTTTCAAAAC
1 TATATATTATATGTTTTAAAAAT
**
20399 TATATAACAATATGTTTTTAAAAAT
1 TATAT-ATTATATG-TTTTAAAAAT
* *
20424 TATACTA-TGTAT-TTTTAAAAAC
1 TATA-TATTATATGTTTTAAAAAT
* **
20446 TATATAGTATATGTTTTTTAAAT
1 TATATATTATATGTTTTAAAAAT
*
20469 T-TATATAATATGTTTTCAAAAAT
1 TATATATTATATGTTTT-AAAAAT
*
20492 TATACTA-TATAT-TTTT-AAAAC
1 TATA-TATTATATGTTTTAAAAAT
*
20513 TATACTA-TATAT-TTTAAAAAAT
1 TATA-TATTATATGTTTTAAAAAT
*
20535 TATATATTATATGTTTTTAAAAAC
1 TATATATTATATG-TTTTAAAAAT
* *
20559 TATAT-TATATAT-TTTCAAAAAC
1 TATATAT-TATATGTTTTAAAAAT
20581 TATATATTAT
1 TATATATTAT
20591 TTAAAATTAT
Statistics
Matches: 156, Mismatches: 22, Indels: 29
0.75 0.11 0.14
Matches are distributed among these distances:
21 23 0.15
22 60 0.38
23 24 0.15
24 33 0.21
25 15 0.10
26 1 0.01
ACGTcount: A:0.43, C:0.06, G:0.03, T:0.48
Consensus pattern (23 bp):
TATATATTATATGTTTTAAAAAT
Found at i:20590 original size:46 final size:46
Alignment explanation
Indices: 20378--20586 Score: 228
Period size: 46 Copynumber: 4.6 Consensus size: 46
20368 AAAAACTATA
* * *
20378 TATATTATATGTTTTC-AAAACTATATAACAATATGTTTTTAAAAAT
1 TATATTATATATTTTCAAAAACTATAT-ACTATATGTTTTTAAAAAC
* * * * * **
20424 TATACTATGTATTTTTAAAAACTATATAGTATATGTTTTTTAAATT
1 TATATTATATATTTTCAAAAACTATATACTATATGTTTTTAAAAAC
* * *
20470 TATATAATATGTTTTCAAAAA-T-TATACTATATATTTTT-AAAAC
1 TATATTATATATTTTCAAAAACTATATACTATATGTTTTTAAAAAC
* * * *
20513 TATACTATATATTTTAAAAAATTATATATTATATGTTTTTAAAAAC
1 TATATTATATATTTTCAAAAACTATATACTATATGTTTTTAAAAAC
20559 TATATTATATATTTTCAAAAACTATATA
1 TATATTATATATTTTCAAAAACTATATA
20587 TTATTTAAAA
Statistics
Matches: 133, Mismatches: 26, Indels: 8
0.80 0.16 0.05
Matches are distributed among these distances:
43 20 0.15
44 15 0.11
45 15 0.11
46 73 0.55
47 10 0.08
ACGTcount: A:0.43, C:0.06, G:0.03, T:0.48
Consensus pattern (46 bp):
TATATTATATATTTTCAAAAACTATATACTATATGTTTTTAAAAAC
Found at i:20612 original size:89 final size:88
Alignment explanation
Indices: 20414--20611 Score: 213
Period size: 89 Copynumber: 2.2 Consensus size: 88
20404 AACAATATGT
* * * * **
20414 TTTTAAAAATTATACTATGTATTTTTAAAAACTATATAGTATATGTTTTTTAAATTTATATAATA
1 TTTTAAAAA-TATAATATATATTTTAAAAAACTATATAGTATATGTTTTTAAAAACTATATAATA
* *
20479 TGTTTTCAAAAATTATACTATATA
65 TATTTTCAAAAACTATACTATATA
* * * * *
20503 TTTTTAAAACTATACTATATATTTTAAAAAATTATATATTATATGTTTTTAAAAACTATATTATA
1 -TTTTAAAAATATAATATATATTTTAAAAAACTATATAGTATATGTTTTTAAAAACTATATAATA
20568 TATTTTCAAAAACTATA-TAT-TA
65 TATTTTCAAAAACTATACTATATA
*
20590 -TTTAAAATTATATATTATATAT
1 TTTTAAAA--ATATAATATATAT
20612 AATCATCTAT
Statistics
Matches: 93, Mismatches: 13, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
85 7 0.08
87 13 0.14
88 3 0.03
89 62 0.67
90 8 0.09
ACGTcount: A:0.43, C:0.05, G:0.03, T:0.49
Consensus pattern (88 bp):
TTTTAAAAATATAATATATATTTTAAAAAACTATATAGTATATGTTTTTAAAAACTATATAATAT
ATTTTCAAAAACTATACTATATA
Found at i:22616 original size:104 final size:104
Alignment explanation
Indices: 22436--22645 Score: 420
Period size: 104 Copynumber: 2.0 Consensus size: 104
22426 TTATATTTAA
22436 ATGTATTTTGGTATAAATTCTCAAAAGCTCAACTTTTCTTATGCAGCCCATATGAACATCACCCT
1 ATGTATTTTGGTATAAATTCTCAAAAGCTCAACTTTTCTTATGCAGCCCATATGAACATCACCCT
22501 AAAGTTCAGTTCAAAGTTAGAAAGCGCGCGCATATGTGT
66 AAAGTTCAGTTCAAAGTTAGAAAGCGCGCGCATATGTGT
22540 ATGTATTTTGGTATAAATTCTCAAAAGCTCAACTTTTCTTATGCAGCCCATATGAACATCACCCT
1 ATGTATTTTGGTATAAATTCTCAAAAGCTCAACTTTTCTTATGCAGCCCATATGAACATCACCCT
22605 AAAGTTCAGTTCAAAGTTAGAAAGCGCGCGCATATGTGT
66 AAAGTTCAGTTCAAAGTTAGAAAGCGCGCGCATATGTGT
22644 AT
1 AT
22646 ATATATATAT
Statistics
Matches: 106, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
104 106 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (104 bp):
ATGTATTTTGGTATAAATTCTCAAAAGCTCAACTTTTCTTATGCAGCCCATATGAACATCACCCT
AAAGTTCAGTTCAAAGTTAGAAAGCGCGCGCATATGTGT
Found at i:23940 original size:2 final size:2
Alignment explanation
Indices: 23933--23963 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
23923 CTTCAATTTG
23933 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
23964 GTCTTTGTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:28716 original size:94 final size:93
Alignment explanation
Indices: 28581--28916 Score: 278
Period size: 94 Copynumber: 3.6 Consensus size: 93
28571 TACGTAGAAG
* *
28581 AAAAATATTTATTGTAATTATTAAAGTTTTATTAAAATATATATATTCATATAATAA-A-ACCTA
1 AAAAATAATTATTATAATTATTAAA-TTTTATTAAAATATATATATT-ATATAATAAGATACC--
* * *
28644 ATATCAGTTGA-ATTAGATTTATATATTTTAAA
62 ATATAAGTTGAGA-TAAATTTATATATTTAAAA
* * * *
28676 AAAGATAATTATTATAATTATTAAATTTTATTAAAATATATAT-TTATTTAATAAGATTCCATCT
1 AAAAATAATTATTATAATTATTAAATTTTATTAAAATATATATATTATATAATAAGATACCATAT
28740 AAGTTGAGATAAATTTATATATTTAAAAA
66 AAGTTGAGATAAATTTATATATTT-AAAA
* * * * * * *
28769 GAAAAATGATTATTATAATTATCACATTTTATTAAAATATGTATATATATATATTTAATATAACA
1 -AAAAATAATTATTATAATTATTAAATTTTATTAAAATATATATAT-TATATA-ATAAGATACCA
*
28834 TAATTTAACTTGAGAT-AATTTAATATATTT---A
63 T-A--TAAGTTGAGATAAATTT-ATATATTTAAAA
* * **
28865 AAAAATAATTAATATAATTATCAAGA-TTTATTAAAGCATATAT-TTGATATAA
1 AAAAATAATTATTATAATTATTAA-ATTTTATTAAAATATATATATT-ATATAA
28917 CCTTATCTTA
Statistics
Matches: 199, Mismatches: 28, Indels: 30
0.77 0.11 0.12
Matches are distributed among these distances:
92 31 0.16
93 8 0.04
94 64 0.32
95 58 0.29
96 7 0.04
97 8 0.04
99 5 0.03
100 18 0.09
ACGTcount: A:0.47, C:0.04, G:0.05, T:0.43
Consensus pattern (93 bp):
AAAAATAATTATTATAATTATTAAATTTTATTAAAATATATATATTATATAATAAGATACCATAT
AAGTTGAGATAAATTTATATATTTAAAA
Found at i:38160 original size:43 final size:43
Alignment explanation
Indices: 38099--38206 Score: 171
Period size: 43 Copynumber: 2.5 Consensus size: 43
38089 CTCTCCATAA
* * *
38099 AGGATCCCATGTAGAATTAGGACGTAGATTATGCCCTTTGTAG
1 AGGATCCCATGCAGAATTAGGACGTAGATTATACCCTCTGTAG
*
38142 AGGATCCCATGCAGAATTAGGACGTGGATTATACCCTCTGTAG
1 AGGATCCCATGCAGAATTAGGACGTAGATTATACCCTCTGTAG
*
38185 AGGATCCCATGCAGAATCAGGA
1 AGGATCCCATGCAGAATTAGGA
38207 TAGGTATACA
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (43 bp):
AGGATCCCATGCAGAATTAGGACGTAGATTATACCCTCTGTAG
Found at i:43211 original size:21 final size:21
Alignment explanation
Indices: 43141--43222 Score: 76
Period size: 21 Copynumber: 3.9 Consensus size: 21
43131 AGAACCCCAT
* **
43141 GGGGGTATCGATTCCCTTGTG
1 GGGGGAATCGATTCCCTCATG
* * **
43162 GGGGGATTCGGTTCCCCTTCAAA
1 GGGGGAATCGATT-CCC-TCATG
43185 GGGGGAATCGATTCCCTCATG
1 GGGGGAATCGATTCCCTCATG
43206 GGGGG-ATCGATTCCCTC
1 GGGGGAATCGATTCCCTC
43223 TGCACCAAAA
Statistics
Matches: 48, Mismatches: 11, Indels: 5
0.75 0.17 0.08
Matches are distributed among these distances:
20 12 0.25
21 18 0.38
22 6 0.12
23 12 0.25
ACGTcount: A:0.15, C:0.24, G:0.34, T:0.27
Consensus pattern (21 bp):
GGGGGAATCGATTCCCTCATG
Found at i:43222 original size:20 final size:20
Alignment explanation
Indices: 43138--43222 Score: 80
Period size: 20 Copynumber: 4.0 Consensus size: 20
43128 ACCAGAACCC
*
43138 CATGGGGGTATCGATTCCCT
1 CATGGGGGGATCGATTCCCT
** *
43158 TGTGGGGGGATTCGGTTCCCCTT
1 CATGGGGGGA-TCGATT-CCC-T
* *
43181 CAAAGGGGGAATCGATTCCCT
1 C-ATGGGGGGATCGATTCCCT
43202 CATGGGGGGATCGATTCCCT
1 CATGGGGGGATCGATTCCCT
43222 C
1 C
43223 TGCACCAAAA
Statistics
Matches: 50, Mismatches: 11, Indels: 8
0.72 0.16 0.12
Matches are distributed among these distances:
20 25 0.50
21 7 0.14
22 6 0.12
23 6 0.12
24 6 0.12
ACGTcount: A:0.15, C:0.25, G:0.33, T:0.27
Consensus pattern (20 bp):
CATGGGGGGATCGATTCCCT
Found at i:52152 original size:34 final size:35
Alignment explanation
Indices: 52127--52220 Score: 108
Period size: 34 Copynumber: 2.8 Consensus size: 35
52117 ATTATTACAT
52127 GTTTTCAAAAATCATTTTTAAAA-TATATATTAAC
1 GTTTTCAAAAATCATTTTTAAAACTATATATTAAC
* *
52161 G-TTTC-AAAACCTTTTTTAAAAACTATATATTATAC
1 GTTTTCAAAAATCATTTTT-AAAACTATATATTA-AC
*
52196 GTTTT-TAAAAT-ATTTTTAAAACTAT
1 GTTTTCAAAAATCATTTTTAAAACTAT
52221 TCAAAAATGT
Statistics
Matches: 51, Mismatches: 4, Indels: 10
0.78 0.06 0.15
Matches are distributed among these distances:
32 10 0.20
33 8 0.16
34 18 0.35
35 8 0.16
36 7 0.14
ACGTcount: A:0.41, C:0.10, G:0.03, T:0.46
Consensus pattern (35 bp):
GTTTTCAAAAATCATTTTTAAAACTATATATTAAC
Found at i:52411 original size:3 final size:3
Alignment explanation
Indices: 52398--52434 Score: 60
Period size: 3 Copynumber: 13.0 Consensus size: 3
52388 AAAAGCTATA
52398 TAT TA- TAT TAT TA- TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
52435 ATACACTAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
2 4 0.12
3 28 0.88
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:52638 original size:29 final size:29
Alignment explanation
Indices: 52604--52679 Score: 100
Period size: 29 Copynumber: 2.6 Consensus size: 29
52594 GGATCCTATA
52604 TAGAATCAAGATGAGT-ATACAATCCCATG
1 TAGAATCAAGATG-GTGATACAATCCCATG
*
52633 TAGAATCAAGATGGTGATACAATCTCATG
1 TAGAATCAAGATGGTGATACAATCCCATG
* * *
52662 CAGAATCATGACGGTGAT
1 TAGAATCAAGATGGTGAT
52680 TATGCCCTTC
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
28 2 0.05
29 40 0.95
ACGTcount: A:0.38, C:0.16, G:0.21, T:0.25
Consensus pattern (29 bp):
TAGAATCAAGATGGTGATACAATCCCATG
Found at i:55523 original size:14 final size:15
Alignment explanation
Indices: 55499--55538 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
55489 CATAACATTT
55499 TAATGAAAATTTGAA
1 TAATGAAAATTTGAA
55514 TAAT-AAAATTTGAA
1 TAATGAAAATTTGAA
* *
55528 TGATGATAATT
1 TAATGAAAATT
55539 CCCCCACGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
14 13 0.59
15 9 0.41
ACGTcount: A:0.50, C:0.00, G:0.12, T:0.38
Consensus pattern (15 bp):
TAATGAAAATTTGAA
Done.