Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004109.1 Hibiscus syriacus cultivar Beakdansim tig00008994_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  163315

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1418--1461
3
14.7
3
86
9
63
38
0
0
61
0.96
5198--5491
125
2.4
123
89
2
421
32
15
26
25
1.96
6426--6468
22
2.0
22
86
9
61
39
11
6
41
1.68
6677--6726
15
3.3
15
97
0
91
30
34
22
14
1.93
9071--9167
42
2.3
42
80
1
106
24
20
22
31
1.98
8852--9785
225
4.3
214
82
6
1081
32
16
19
31
1.94
9284--9392
42
2.6
41
80
2
110
25
22
19
32
1.97
9937--10089
37
4.2
37
87
1
227
34
22
18
24
1.96
9937--10079
73
2.0
73
91
2
234
33
22
20
23
1.97
16137--16161
13
1.9
13
100
0
50
40
8
24
28
1.83
24297--24353
29
2.0
29
82
6
71
42
5
1
50
1.35
34266--34407
48
3.0
48
97
1
268
45
8
2
43
1.49
34293--34372
24
3.2
26
66
20
80
47
8
2
41
1.48
34319--34394
24
3.3
22
66
20
64
47
6
1
44
1.37
38343--38390
20
2.5
20
86
3
62
33
22
14
29
1.94
38339--38394
19
2.9
19
82
7
69
33
21
12
32
1.91
45147--45186
21
1.9
21
89
0
62
10
25
40
25
1.86
45167--45229
20
2.9
21
79
9
65
15
25
34
23
1.95
58280--58353
37
2.0
37
97
0
139
50
6
5
37
1.52
58637--58661
13
1.9
13
100
0
50
24
24
12
40
1.88
65785--65824
17
2.4
17
83
4
55
45
0
2
52
1.14
67993--68017
13
1.9
13
100
0
50
60
8
0
32
1.26
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
69399--69455
28
2.0
28
100
0
114
61
7
17
14
1.54
74298--74335
15
2.4
17
86
8
53
52
2
0
44
1.14
75552--75624
3
25.3
3
91
8
125
65
0
0
34
0.93
75821--75925
36
2.9
36
94
4
176
18
19
19
43
1.88
76319--76353
18
1.9
18
88
11
54
45
17
2
34
1.63
77985--78010
3
8.7
3
100
0
52
0
34
0
65
0.93
87012--87095
20
4.2
20
73
16
59
52
4
0
42
1.22
87155--87203
20
2.3
23
80
16
61
55
0
2
42
1.11
87269--87303
14
2.5
14
90
0
61
62
8
5
22
1.45
88481--88518
3
13.3
3
83
10
53
63
0
0
36
0.95
88481--88518
11
3.4
11
88
3
58
63
0
0
36
0.95
88981--89010
14
2.1
14
93
0
51
30
20
10
40
1.85
93598--93646
8
5.9
9
86
11
61
77
0
22
0
0.77
93608--93646
4
9.8
4
94
0
69
79
0
20
0
0.73
101107--101166
24
2.7
23
87
7
88
26
18
30
25
1.98
101754--101816
33
1.9
33
96
0
117
31
11
30
26
1.91
103090--103127
19
2.0
19
89
0
58
42
18
23
15
1.89
140778--140803
13
2.0
13
100
0
52
53
0
0
46
1.00

Tables:   1

The End!