genome.fa.s4110.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004110.1 Hibiscus syriacus cultivar Beakdansim tig00008995_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  117943

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2322--2352	15	2.0	16	93	6	55	38	0	0	61	0.96
2838--2925	36	2.4	36	92	0	140	44	28	13	13	1.82
2940--3059	36	3.3	35	77	4	132	37	35	12	14	1.84
2978--3076	36	2.8	36	77	9	94	37	34	9	19	1.83
5837--5862	5	5.2	5	100	0	52	0	19	0	80	0.71
11503--11566	19	3.2	20	72	14	53	43	1	1	53	1.19
11512--11561	20	2.5	20	78	12	59	40	2	2	56	1.22
11479--11565	31	2.8	30	79	10	95	41	2	3	52	1.31
11831--11855	4	6.2	4	100	0	50	76	0	0	24	0.80
12289--12375	31	2.8	30	77	10	86	52	5	1	40	1.33
16663--16853	37	5.2	35	68	17	111	39	16	6	37	1.74
16669--16847	36	4.8	36	70	11	130	38	16	6	37	1.75
16669--17007	72	4.7	70	80	8	306	34	19	9	36	1.83
16806--17060	72	3.6	72	84	1	293	33	19	10	36	1.86
16893--17056	34	4.7	34	69	9	107	25	20	12	42	1.86
27903--27943	12	3.5	12	96	3	75	24	4	0	70	1.06
27989--28038	25	2.0	25	100	0	100	36	24	0	40	1.55
27995--28053	25	2.5	24	86	5	75	35	20	3	40	1.69
33087--33244	21	7.8	20	72	7	86	38	25	17	18	1.92
33211--33404	20	9.7	20	84	2	210	35	25	20	19	1.95
33786--33856	33	2.2	33	89	0	106	11	23	16	47	1.79
33929--34045	41	3.1	38	79	14	136	45	17	25	11	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33936--34011	21	3.7	21	85	3	109	44	18	25	11	1.83
33996--34052	14	3.7	14	75	20	60	43	22	24	8	1.81
33988--34068	33	2.5	33	93	0	135	45	23	22	8	1.79
35184--35283	19	5.5	19	83	12	138	45	16	23	16	1.85
35184--35300	53	2.2	53	93	1	200	43	16	24	15	1.86
35290--35457	19	9.6	19	76	18	177	15	22	17	44	1.87
35296--35457	33	4.7	33	88	8	234	14	22	17	45	1.85
35290--35457	71	2.4	68	90	5	250	15	22	17	44	1.87
35385--35439	14	3.6	14	73	21	56	10	23	20	45	1.82
35516--35614	20	5.4	19	76	15	100	45	19	21	14	1.85
35516--35633	53	2.2	53	93	0	200	44	19	22	13	1.86
37952--37976	12	2.1	12	100	0	50	0	28	0	72	0.86
38151--38197	24	2.0	24	87	8	69	38	21	14	25	1.92
38880--39129	20	12.5	20	84	3	261	19	18	24	37	1.94
39486--39635	60	2.5	61	81	4	162	33	16	4	45	1.68
46732--46763	3	11.0	3	93	6	57	65	0	0	34	0.93
56232--56290	27	2.2	27	81	0	64	33	27	11	27	1.92
61831--61872	21	2.0	21	100	0	84	19	19	19	42	1.89
70054--70141	36	2.5	36	85	5	117	40	4	6	47	1.50
70143--70177	17	2.1	17	88	0	52	42	2	11	42	1.55
71108--71138	7	4.4	7	100	0	62	38	0	45	16	1.47
73990--74030	6	6.8	6	100	0	82	51	14	0	34	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84459--84505	21	2.4	19	86	10	67	21	6	2	70	1.20
86192--86228	16	2.3	16	100	0	74	13	13	10	62	1.55
88148--89102	106	9.0	106	97	0	1667	34	25	18	22	1.96
88148--89240	212	5.3	212	93	2	1735	34	24	18	22	1.96
89440--89669	81	2.8	83	75	5	216	30	24	20	24	1.98
91530--91576	21	2.4	19	86	10	67	21	6	2	70	1.20
102151--102176	11	2.4	11	100	0	52	65	0	0	34	0.93
102215--102426	99	2.1	101	90	3	331	46	8	4	40	1.55
102407--102432	2	13.0	2	100	0	52	50	0	0	50	1.00
103763--103827	20	3.3	20	71	4	69	23	23	10	43	1.85
103877--104483	123	4.7	135	76	12	398	25	18	15	40	1.90
104163--104476	123	2.6	122	90	1	484	23	20	14	40	1.90
106148--106182	11	3.2	11	88	12	54	0	17	0	82	0.66
113445--113469	11	2.3	11	100	0	50	28	0	0	72	0.86
113497--113528	15	2.1	15	94	0	55	50	3	18	28	1.62
117514--117711	93	2.1	91	85	10	260	45	10	5	39	1.60

Tables:   1

The End!