Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004112.1 Hibiscus syriacus cultivar Beakdansim tig00008999_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77522

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
727--770
23
1.9
23
85
0
61
18
31
25
25
1.97
13716--13770
24
2.3
23
87
6
74
32
14
3
49
1.61
13716--13779
24
2.7
24
83
9
69
29
15
6
48
1.70
15543--15568
2
13.0
2
100
0
52
50
0
0
50
1.00
17851--17910
31
1.9
31
83
6
77
18
5
5
71
1.23
19546--19594
24
2.0
24
84
7
64
63
8
12
16
1.51
22672--22708
11
3.2
12
85
7
51
70
0
18
10
1.16
26867--26996
44
3.0
45
78
8
144
30
19
17
33
1.95
27050--27161
39
3.0
37
79
6
127
27
16
8
46
1.77
27242--27310
36
1.9
36
84
0
93
26
15
8
49
1.74
27242--27323
36
2.3
36
82
0
92
24
15
9
50
1.75
27303--27342
15
2.7
15
100
0
80
22
15
17
45
1.85
35355--35403
20
2.5
20
78
15
66
61
4
30
4
1.33
36039--36106
20
3.4
20
95
0
127
16
17
13
52
1.74
37361--37429
23
3.0
23
82
0
93
34
26
21
17
1.95
39036--39090
21
2.6
21
88
0
83
29
29
12
29
1.93
43265--43307
20
2.2
20
86
0
59
34
20
13
30
1.92
45906--45940
13
2.7
13
86
0
52
62
0
25
11
1.28
53634--53676
20
2.2
20
86
0
59
34
20
13
30
1.92
55908--55954
21
2.2
21
77
7
51
21
8
0
70
1.14
65023--65049
14
1.9
14
100
0
54
22
22
37
18
1.95
66084--66117
17
2.1
16
88
5
50
14
8
0
76
1.01
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
70201--70251
21
2.4
21
86
0
75
27
15
25
31
1.96
70367--70498
64
2.1
64
95
0
237
22
16
22
37
1.93
76136--76174
21
1.9
20
89
5
60
61
2
17
17
1.46

Tables:   1

The End!