Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01004114.1 Hibiscus syriacus cultivar Beakdansim tig00009003_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1048340
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 4 of 5
Found at i:756683 original size:28 final size:30
Alignment explanation
Indices: 756618--756685 Score: 95
Period size: 28 Copynumber: 2.3 Consensus size: 30
756608 AGATGAGATG
*
756618 TGCACTTTTTGCTCATTATATATCATTCGA
1 TGCAGTTTTTGCTCATTATATATCATTCGA
* *
756648 TGCAGTTTTTGCTCA-T-TATGTCTTTCGA
1 TGCAGTTTTTGCTCATTATATATCATTCGA
756676 TGCAGTTTTT
1 TGCAGTTTTT
756686 ACCACAAGAT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
28 20 0.57
29 1 0.03
30 14 0.40
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.50
Consensus pattern (30 bp):
TGCAGTTTTTGCTCATTATATATCATTCGA
Found at i:761175 original size:22 final size:22
Alignment explanation
Indices: 761150--761201 Score: 61
Period size: 22 Copynumber: 2.3 Consensus size: 22
761140 AAAACATTAA
*
761150 AAAAATAATATATATAATTTA-T
1 AAAAATAAAATAT-TAATTTATT
*
761172 AAAAATAAAATATTTATTTATTT
1 AAAAATAAAATATTAATTTA-TT
761195 AAAAATA
1 AAAAATA
761202 TCAGAAAATG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
21 6 0.23
22 12 0.46
23 8 0.31
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (22 bp):
AAAAATAAAATATTAATTTATT
Found at i:761355 original size:2 final size:2
Alignment explanation
Indices: 761348--761372 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
761338 AAATATTATT
761348 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
761373 TTGTAATAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:761384 original size:3 final size:3
Alignment explanation
Indices: 761376--761411 Score: 63
Period size: 3 Copynumber: 12.0 Consensus size: 3
761366 TATATATTTG
*
761376 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAG TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
761412 ATAAATATAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:762997 original size:3 final size:3
Alignment explanation
Indices: 762984--763033 Score: 57
Period size: 3 Copynumber: 16.3 Consensus size: 3
762974 TATATTTATT
* *
762984 TAA TAAA TAA TAA TAA TAA TAA T-A TATA TTA TAT TAA TAA TAA TAA
1 TAA T-AA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA
763030 TAA T
1 TAA T
763034 TATATTTATG
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
2 2 0.05
3 33 0.82
4 5 0.12
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (3 bp):
TAA
Found at i:763001 original size:30 final size:31
Alignment explanation
Indices: 762967--763038 Score: 96
Period size: 33 Copynumber: 2.3 Consensus size: 31
762957 ATGTAATTTG
762967 TAATATATATAT-TTAT-TTAATAAATAATAA
1 TAATATATATATATTATATTAAT-AATAATAA
762997 TAATAATAATATATATTATATTAATAATAATAA
1 TAAT-AT-ATATATATTATATTAATAATAATAA
763030 TAAT-TATAT
1 TAATATATAT
763039 TTATGAAAAA
Statistics
Matches: 38, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
30 8 0.21
31 3 0.08
32 6 0.16
33 16 0.42
34 5 0.13
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (31 bp):
TAATATATATATATTATATTAATAATAATAA
Found at i:763022 original size:21 final size:21
Alignment explanation
Indices: 762997--763039 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 21
762987 TAAATAATAA
762997 TAATAATAAT-ATATATTATAT
1 TAATAATAATAATA-ATTATAT
763018 TAATAATAATAATAATTATAT
1 TAATAATAATAATAATTATAT
763039 T
1 T
763040 TATGAAAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 18 0.86
22 3 0.14
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (21 bp):
TAATAATAATAATAATTATAT
Found at i:763229 original size:46 final size:46
Alignment explanation
Indices: 763162--764160 Score: 1618
Period size: 46 Copynumber: 21.8 Consensus size: 46
763152 GACAAAAATG
* * *
763162 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACTCAAAGGTT
1 TTTGAAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGTT
763208 TTTGAAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGTT
1 TTTGAAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGTT
763254 TTTGAAAACATCATGCACTGAA-GACTTACAGATGACCCGAAGGTT
1 TTTGAAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGTT
763299 TTTGAAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGTTT
1 TTTGAAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGG-TT
* * *
763346 TTTGAAAACTTCATGCGCTGAAGGACTTACAGATGACCTGAAGGTTT
1 TTTGAAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGG-TT
763393 TTTGAAAACATCATGCACTGAAGGACTTACA-ATGACCCGAAGGTT
1 TTTGAAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGTT
763438 TTTGAAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGTT
1 TTTGAAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGTT
763484 TTTGAAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGTT
1 TTTGAAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGTT
* **
763530 TTTGAAAACATCATGCACTGAAGAACTTACAGATGACCTAAAGGTT
1 TTTGAAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGTT
*
763576 TTTAAAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGTT
1 TTTGAAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGTT
*
763622 TTTGAAAACATCATGTACTGAAGGACTTACAGATGACCC-AGAGG-T
1 TTTGAAAACATCATGCACTGAAGGACTTACAGATGACCCGA-AGGTT
763667 TTTGAAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGTT
1 TTTGAAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGTT
* * * *
763713 TTTGATAACATCATGCAATGAAGGGCTTACAGATGACCCGGAGG-T
1 TTTGAAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGTT
**
763758 TTTGAAAACATCATGCACTGAAGGACTTAGTGATGACCCGAAGGTT
1 TTTGAAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGTT
*
763804 TTTGATAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGTTT
1 TTTGAAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGG-TT
* *
763851 TTTGATAACATCATGCACTGAAGGACTTATAGATGACCCGAAGGTT
1 TTTGAAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGTT
* * * *
763897 TTTGATAACATCATGCACTGAAGGGCTTACAGATGACCCGTA-GAT
1 TTTGAAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGTT
*
763942 TTTGAAAACATCATGCATTGAAGGACTTACAGATGACCCGAAGGTT
1 TTTGAAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGTT
*
763988 TTTGATAACATCATGCACTGAAAGG-CTTACAGATGACCCGAAGG-T
1 TTTGAAAACATCATGCACTG-AAGGACTTACAGATGACCCGAAGGTT
**
764033 TTTGAAAACATCATGCACTGAAGGACTTAGTGATGACCCGAAGGTT
1 TTTGAAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGTT
*
764079 TTTGATAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGTTT
1 TTTGAAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGG-TT
*
764126 TTTGATAACATCATGCACTGAAGGACTTACAGATG
1 TTTGAAAACATCATGCACTGAAGGACTTACAGATG
764161 TTGGAAATAG
Statistics
Matches: 890, Mismatches: 50, Indels: 25
0.92 0.05 0.03
Matches are distributed among these distances:
44 4 0.00
45 237 0.27
46 488 0.55
47 161 0.18
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.26
Consensus pattern (46 bp):
TTTGAAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGTT
Found at i:763318 original size:91 final size:92
Alignment explanation
Indices: 763162--764160 Score: 1618
Period size: 91 Copynumber: 10.9 Consensus size: 92
763152 GACAAAAATG
* * *
763162 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACTCAAAGGTTTTTGAAAACATCATGCACT
1 TTTGAAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGTTTTTGAAAACATCATGCACT
763227 GAAGGACTTACAGATGACCCGAAGGTT
66 GAAGGACTTACAGATGACCCGAAGGTT
763254 TTTGAAAACATCATGCACTGAA-GACTTACAGATGACCCGAAGGTTTTTGAAAACATCATGCACT
1 TTTGAAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGTTTTTGAAAACATCATGCACT
763318 GAAGGACTTACAGATGACCCGAAGGTTT
66 GAAGGACTTACAGATGACCCGAAGG-TT
* * *
763346 TTTGAAAACTTCATGCGCTGAAGGACTTACAGATGACCTGAAGGTTTTTTGAAAACATCATGCAC
1 TTTGAAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGG-TTTTTGAAAACATCATGCAC
763411 TGAAGGACTTACA-ATGACCCGAAGGTT
65 TGAAGGACTTACAGATGACCCGAAGGTT
763438 TTTGAAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGTTTTTGAAAACATCATGCACT
1 TTTGAAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGTTTTTGAAAACATCATGCACT
763503 GAAGGACTTACAGATGACCCGAAGGTT
66 GAAGGACTTACAGATGACCCGAAGGTT
* ** *
763530 TTTGAAAACATCATGCACTGAAGAACTTACAGATGACCTAAAGGTTTTTAAAAACATCATGCACT
1 TTTGAAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGTTTTTGAAAACATCATGCACT
763595 GAAGGACTTACAGATGACCCGAAGGTT
66 GAAGGACTTACAGATGACCCGAAGGTT
*
763622 TTTGAAAACATCATGTACTGAAGGACTTACAGATGACCC-AGAGG-TTTTGAAAACATCATGCAC
1 TTTGAAAACATCATGCACTGAAGGACTTACAGATGACCCGA-AGGTTTTTGAAAACATCATGCAC
763685 TGAAGGACTTACAGATGACCCGAAGGTT
65 TGAAGGACTTACAGATGACCCGAAGGTT
* * * *
763713 TTTGATAACATCATGCAATGAAGGGCTTACAGATGACCCGGAGG-TTTTGAAAACATCATGCACT
1 TTTGAAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGTTTTTGAAAACATCATGCACT
**
763777 GAAGGACTTAGTGATGACCCGAAGGTT
66 GAAGGACTTACAGATGACCCGAAGGTT
* *
763804 TTTGATAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGTTTTTTGATAACATCATGCAC
1 TTTGAAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGG-TTTTTGAAAACATCATGCAC
*
763869 TGAAGGACTTATAGATGACCCGAAGGTT
65 TGAAGGACTTACAGATGACCCGAAGGTT
* * * * *
763897 TTTGATAACATCATGCACTGAAGGGCTTACAGATGACCCGTA-GATTTTGAAAACATCATGCATT
1 TTTGAAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGTTTTTGAAAACATCATGCACT
763961 GAAGGACTTACAGATGACCCGAAGGTT
66 GAAGGACTTACAGATGACCCGAAGGTT
*
763988 TTTGATAACATCATGCACTGAAAGG-CTTACAGATGACCCGAAGG-TTTTGAAAACATCATGCAC
1 TTTGAAAACATCATGCACTG-AAGGACTTACAGATGACCCGAAGGTTTTTGAAAACATCATGCAC
**
764051 TGAAGGACTTAGTGATGACCCGAAGGTT
65 TGAAGGACTTACAGATGACCCGAAGGTT
* *
764079 TTTGATAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGTTTTTTGATAACATCATGCAC
1 TTTGAAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGG-TTTTTGAAAACATCATGCAC
764144 TGAAGGACTTACAGATG
65 TGAAGGACTTACAGATG
764161 TTGGAAATAG
Statistics
Matches: 851, Mismatches: 43, Indels: 25
0.93 0.05 0.03
Matches are distributed among these distances:
90 4 0.00
91 431 0.51
92 234 0.27
93 149 0.18
94 33 0.04
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.26
Consensus pattern (92 bp):
TTTGAAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGTTTTTGAAAACATCATGCACT
GAAGGACTTACAGATGACCCGAAGGTT
Found at i:766220 original size:75 final size:75
Alignment explanation
Indices: 766114--766272 Score: 248
Period size: 75 Copynumber: 2.1 Consensus size: 75
766104 AAAATGATAT
* * * *
766114 GGGG-TTTCAGCATGCCCCAACATTGGTTAATACAAGCATTCAAAATGCGTCAACATTCTTTATT
1 GGGGCTTTCAACATGCCCCAACATTGGCTAATACAAGCATTCAAAATGCGTCAACATTATTCATT
766178 CTGATTGAAA
66 CTGATTGAAA
* *
766188 GGGGCTTTCAACATGCCCCAACATTGGCTAATACAAGCGTTCAAAATGCGTGAACATTATTCATT
1 GGGGCTTTCAACATGCCCCAACATTGGCTAATACAAGCATTCAAAATGCGTCAACATTATTCATT
*
766253 CTGTTTGAAA
66 CTGATTGAAA
766263 GGGGCTTTCA
1 GGGGCTTTCA
766273 GCATACCCTA
Statistics
Matches: 77, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
74 4 0.05
75 73 0.95
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (75 bp):
GGGGCTTTCAACATGCCCCAACATTGGCTAATACAAGCATTCAAAATGCGTCAACATTATTCATT
CTGATTGAAA
Found at i:774637 original size:22 final size:21
Alignment explanation
Indices: 774612--774654 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
774602 AAAACATTAA
*
774612 AAAAATAATATATATAATTTAT
1 AAAAATAAAATAT-TAATTTAT
*
774634 AAAAATAAAATATTTATTTAT
1 AAAAATAAAATATTAATTTAT
774655 TTATTTAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (21 bp):
AAAAATAAAATATTAATTTAT
Found at i:774848 original size:3 final size:3
Alignment explanation
Indices: 774840--774869 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
774830 TATATATTTG
774840 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
774870 ATAAATATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:776444 original size:3 final size:3
Alignment explanation
Indices: 776436--776485 Score: 66
Period size: 3 Copynumber: 16.3 Consensus size: 3
776426 TATATTTATT
*
776436 TAA TAA TAAA TAA TAA TAA T-A TATA TAT TAA TAA TAA TAA TAA TAA
1 TAA TAA T-AA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA
776482 TAA T
1 TAA T
776486 TATATTTATG
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
2 2 0.05
3 34 0.81
4 6 0.14
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (3 bp):
TAA
Found at i:776456 original size:33 final size:30
Alignment explanation
Indices: 776419--776490 Score: 101
Period size: 30 Copynumber: 2.3 Consensus size: 30
776409 ATGTAATTTG
*
776419 TAATATATATATTTATTTAATAATAAATAATAA
1 TAATATATATA-TTA-ATAATAAT-AATAATAA
776452 TAATATATATATTAATAATAATAATAATAA
1 TAATATATATATTAATAATAATAATAATAA
776482 TAAT-TATAT
1 TAATATATAT
776491 TTATGAAAAA
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
29 5 0.13
30 12 0.32
31 7 0.18
32 3 0.08
33 11 0.29
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (30 bp):
TAATATATATATTAATAATAATAATAATAA
Found at i:776478 original size:27 final size:28
Alignment explanation
Indices: 776419--776491 Score: 96
Period size: 27 Copynumber: 2.6 Consensus size: 28
776409 ATGTAATTTG
*
776419 TAATATATATATTTATTTAATAATAAATAA
1 TAATA-ATATATATA-TTAATAATAAATAA
776449 TAATAATATATATATTAATAAT-AATAA
1 TAATAATATATATATTAATAATAAATAA
776476 TAATAATA-ATTATATT
1 TAATAATATA-TATATT
776492 TATGAAAAAA
Statistics
Matches: 41, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
26 1 0.02
27 19 0.46
28 8 0.20
29 8 0.20
30 5 0.12
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (28 bp):
TAATAATATATATATTAATAATAAATAA
Found at i:777139 original size:16 final size:15
Alignment explanation
Indices: 777109--777147 Score: 53
Period size: 16 Copynumber: 2.6 Consensus size: 15
777099 AACGAGCATG
777109 AATCGAATAAAATTT
1 AATCGAATAAAATTT
*
777124 AATCGAACTTAAATTT
1 AATCGAA-TAAAATTT
777140 AATC-AATA
1 AATCGAATA
777148 TGACAAAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
14 1 0.05
15 9 0.43
16 11 0.52
ACGTcount: A:0.51, C:0.10, G:0.05, T:0.33
Consensus pattern (15 bp):
AATCGAATAAAATTT
Found at i:779619 original size:8 final size:8
Alignment explanation
Indices: 779606--779630 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
779596 ACTTATTAAT
779606 AAGAATGG
1 AAGAATGG
779614 AAGAATGG
1 AAGAATGG
779622 AAGAATGG
1 AAGAATGG
779630 A
1 A
779631 GGGGTAATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.52, C:0.00, G:0.36, T:0.12
Consensus pattern (8 bp):
AAGAATGG
Found at i:780882 original size:27 final size:27
Alignment explanation
Indices: 780798--780883 Score: 68
Period size: 27 Copynumber: 3.2 Consensus size: 27
780788 AAATTCATAA
780798 TAAGTTTATGAACGACCGTATCGACAC
1 TAAGTTTATGAACGACCGTATCGACAC
* * * * ** * *
780825 TAAGTGTA-CAAC-CCACGAAATTTATAA
1 TAAGTTTATGAACGAC-CG-TATCGACAC
780852 TAAGTTTATGAACGACCGTATCGACAC
1 TAAGTTTATGAACGACCGTATCGACAC
780879 TAAGT
1 TAAGT
780884 GTGCAACCCA
Statistics
Matches: 39, Mismatches: 16, Indels: 8
0.62 0.25 0.13
Matches are distributed among these distances:
25 1 0.03
26 5 0.13
27 27 0.69
28 5 0.13
29 1 0.03
ACGTcount: A:0.37, C:0.20, G:0.16, T:0.27
Consensus pattern (27 bp):
TAAGTTTATGAACGACCGTATCGACAC
Found at i:780971 original size:54 final size:54
Alignment explanation
Indices: 780762--780954 Score: 332
Period size: 54 Copynumber: 3.6 Consensus size: 54
780752 CTATGTGTAC
* * *
780762 TATCGGCACTAAATGTGCAACCCAAGAAATTCATAATAAGTTTATGAACGACCG
1 TATCGACACTAAGTGTGCAACCCACGAAATTCATAATAAGTTTATGAACGACCG
* *
780816 TATCGACACTAAGTGTACAACCCACGAAATTTATAATAAGTTTATGAACGACCG
1 TATCGACACTAAGTGTGCAACCCACGAAATTCATAATAAGTTTATGAACGACCG
780870 TATCGACACTAAGTGTGCAACCCACGAAATTCATAATAAGTTTATGAACGACCG
1 TATCGACACTAAGTGTGCAACCCACGAAATTCATAATAAGTTTATGAACGACCG
*
780924 TATCGACACTAAGTGTGCAACCCATGAAATT
1 TATCGACACTAAGTGTGCAACCCACGAAATT
780955 TAAAAGGAGT
Statistics
Matches: 131, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 131 1.00
ACGTcount: A:0.38, C:0.21, G:0.16, T:0.25
Consensus pattern (54 bp):
TATCGACACTAAGTGTGCAACCCACGAAATTCATAATAAGTTTATGAACGACCG
Found at i:780996 original size:108 final size:108
Alignment explanation
Indices: 780776--780996 Score: 316
Period size: 108 Copynumber: 2.0 Consensus size: 108
780766 GGCACTAAAT
780776 GTGCAACCCAAGAAATTCATAATAAGTTTATGAACGACCGTATCGACACTAAGTGTACAACCCAC
1 GTGCAACCCAAGAAATTCATAATAAGTTTATGAACGACCGTATCGACACTAAGTGTACAACCCAC
* * * * *
780841 GAAATTTATAATAAGTTTATGAACGACCGTATCGACACTAAGT
66 GAAATTTAAAAGAAGTTTATGAACGACCATATCGACACCAAGC
* * *
780884 GTGCAACCCACGAAATTCATAATAAGTTTATGAACGACCGTATCGACACTAAGTGTGCAACCCAT
1 GTGCAACCCAAGAAATTCATAATAAGTTTATGAACGACCGTATCGACACTAAGTGTACAACCCAC
* * * * * *
780949 GAAATTTAAAAGGAGTTTATGAATGATCATATTGGCACCACGC
66 GAAATTTAAAAGAAGTTTATGAACGACCATATCGACACCAAGC
780992 GTGCA
1 GTGCA
780997 TTTCACAGAA
Statistics
Matches: 99, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
108 99 1.00
ACGTcount: A:0.37, C:0.20, G:0.18, T:0.25
Consensus pattern (108 bp):
GTGCAACCCAAGAAATTCATAATAAGTTTATGAACGACCGTATCGACACTAAGTGTACAACCCAC
GAAATTTAAAAGAAGTTTATGAACGACCATATCGACACCAAGC
Found at i:787398 original size:54 final size:54
Alignment explanation
Indices: 787282--787386 Score: 129
Period size: 54 Copynumber: 1.9 Consensus size: 54
787272 CTATGTGTAC
* * * * *
787282 TATCGACACTAAGTGTGCAACCCACGAAGTTCATAATAAGTTCATGAATGACCA
1 TATCGGCACTAAGTGTGCAACCCACGAAATTAAAAAGAAGTTCATGAATGACCA
* * * *
787336 TATCGGCACTAAGTGTGTAACCCATGAAATTAAAAAGGAGTTTATGAATGA
1 TATCGGCACTAAGTGTGCAACCCACGAAATTAAAAAGAAGTTCATGAATGA
787387 TTATATTGGC
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
54 42 1.00
ACGTcount: A:0.38, C:0.17, G:0.19, T:0.26
Consensus pattern (54 bp):
TATCGGCACTAAGTGTGCAACCCACGAAATTAAAAAGAAGTTCATGAATGACCA
Found at i:792208 original size:224 final size:223
Alignment explanation
Indices: 791773--792232 Score: 604
Period size: 224 Copynumber: 2.1 Consensus size: 223
791763 TTAACATAGC
* * * * *
791773 TAGTTAATTACTAGAAACATTATTAACCATAATAACATAACAGGTAGCGCTTATGTAACATAATA
1 TAGTTAATTACTAGAAACATTATCAACCATAATAAAATAAAAAGTAGCACTTATGTAACATAATA
* **
791838 GGTTGCATCTTTTTAAAGCTGATGGGCCCTAAAAATCCGACGATAACGAAATATTTTAATTACTT
66 GGTTGCA-CTTTTTAAAGCTGATGGGCCCTAAAAATCCGACGATAACAAAATAGGTTAATTACTT
* *
791903 AATTTGTTATCAATATTATCAACATATTAGGTAGCGCCTAAAATGCTACTAAAGTTTAAGATGAT
130 AATTTGTTATCAATATTATCAACATATTAGGTAGCGCCTAAAATACTACTAAAGTTTAAGATGAC
*
791968 GGAGCCTTAGAAATCCGACGATAACAAAA
195 AGAGCCTTAGAAATCCGACGATAACAAAA
* * **
791997 TAAGTTAATTAGTAGAAACATTATCAACCATAATAAAATAAAAAGTAGCACTTATTTAATGTAAT
1 T-AGTTAATTACTAGAAACATTATCAACCATAATAAAATAAAAAGTAGCACTTATGTAACATAAT
* ** * * * *
792062 AGGTAGTGC-CTTTTTAAAGTTGATGGGGCTTTAGAAATCTGATGATAACAAAATAGGTTAATTT
65 AGGT--TGCACTTTTTAAAGCTGAT-GGGCCCTAAAAATCCGACGATAACAAAATAGGTTAATTA
* *
792126 CTTAA-TT-TTATCAATATTATCAACATATTAGGTAGCGCCTAAAATATTA-TCAAAGTTTAAGC
127 CTTAATTTGTTATCAATATTATCAACATATTAGGTAGCGCCTAAAATACTACT-AAAGTTTAAGA
* *
792188 TGACAGAGCCTTATAAATCCGACGATAATAAAA
191 TGACAGAGCCTTAGAAATCCGACGATAACAAAA
792221 TAGTTAATTACT
1 TAGTTAATTACT
792233 TATTTTGTTA
Statistics
Matches: 204, Mismatches: 27, Indels: 11
0.84 0.11 0.05
Matches are distributed among these distances:
223 11 0.05
224 81 0.40
225 74 0.36
226 35 0.17
227 3 0.01
ACGTcount: A:0.40, C:0.13, G:0.14, T:0.32
Consensus pattern (223 bp):
TAGTTAATTACTAGAAACATTATCAACCATAATAAAATAAAAAGTAGCACTTATGTAACATAATA
GGTTGCACTTTTTAAAGCTGATGGGCCCTAAAAATCCGACGATAACAAAATAGGTTAATTACTTA
ATTTGTTATCAATATTATCAACATATTAGGTAGCGCCTAAAATACTACTAAAGTTTAAGATGACA
GAGCCTTAGAAATCCGACGATAACAAAA
Found at i:792365 original size:107 final size:107
Alignment explanation
Indices: 792105--792372 Score: 280
Period size: 107 Copynumber: 2.5 Consensus size: 107
792095 GAAATCTGAT
* * * *
792105 GATAACAAAATAGGTTAATTTCTTA-ATT-TTATCAATATTATCAACATATTAGGTAGCGCCTAA
1 GATAACAAAATAGGTTAATTTATTATTTTGTTATAAATATTATCAACATATTAGGTAACGCCTAA
* * *
792168 AATATTATCAAAGTTTAAGCTGACAGAGCCTTATAAATCCGAC
66 AATATTACCAAAATTTAAGCTGACAGAGCATTATAAATCC-AC
* * *
792211 GATAATAAAATA-GTTAA-TTACTTATTTTGTTATTAATATTATCAACATATTAGGTAATGCCTA
1 GATAACAAAATAGGTTAATTTA-TTATTTTGTTATAAATATTATCAACATATTAGGTAACGCCTA
* * * *
792274 CAATGTTACCAAAATTTAAGTTGATAGAGCATT-TGAAATCC-C
65 AAATATTACCAAAATTTAAGCTGACAGAGCATTAT-AAATCCAC
* * * *
792316 TA-AACAAAATAGGTTAATTTTATTATTTTGTTATAAATAAATATTAACATACTAGGT
1 GATAACAAAATAGGTTAA-TTTATTATTTTGTTATAAAT-ATTATCAACATATTAGGT
792373 TGCGCCCAAT
Statistics
Matches: 135, Mismatches: 19, Indels: 15
0.80 0.11 0.09
Matches are distributed among these distances:
104 10 0.07
105 15 0.11
106 29 0.21
107 81 0.60
ACGTcount: A:0.40, C:0.12, G:0.11, T:0.37
Consensus pattern (107 bp):
GATAACAAAATAGGTTAATTTATTATTTTGTTATAAATATTATCAACATATTAGGTAACGCCTAA
AATATTACCAAAATTTAAGCTGACAGAGCATTATAAATCCAC
Found at i:792944 original size:75 final size:75
Alignment explanation
Indices: 792847--793009 Score: 204
Period size: 75 Copynumber: 2.2 Consensus size: 75
792837 GTAATGTTTA
* * * * * *
792847 TTTAACATTATAGGTAGTGCCTATTTTATTTTATCGTTTACATTA-TT-TGTAACCTCTAATCAA
1 TTTAACGTAATAGATAGCGCCTATTTTATTTTACCGTTTACA-TAGTTAT-TAACCTCTAAACAA
* *
792910 ACCGGTAGGTAT
64 ACCGGTAGCTAG
* *
792922 TTTAACGTAATAGATAGCGCCTATTTTATTTTACCGTTTACATAGTTATTAGCCTTTAAACAAAC
1 TTTAACGTAATAGATAGCGCCTATTTTATTTTACCGTTTACATAGTTATTAACCTCTAAACAAAC
792987 CGGTAGCTAG
66 CGGTAGCTAG
792997 TTTAACGTAATAG
1 TTTAACGTAATAG
793010 GTAACGCTTA
Statistics
Matches: 76, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
74 2 0.03
75 73 0.96
76 1 0.01
ACGTcount: A:0.30, C:0.15, G:0.14, T:0.40
Consensus pattern (75 bp):
TTTAACGTAATAGATAGCGCCTATTTTATTTTACCGTTTACATAGTTATTAACCTCTAAACAAAC
CGGTAGCTAG
Found at i:793023 original size:23 final size:24
Alignment explanation
Indices: 792997--793058 Score: 85
Period size: 23 Copynumber: 2.7 Consensus size: 24
792987 CGGTAGCTAG
792997 TTTAACGTAATAGGTAACGC-T-TA
1 TTTAACGTAATAGGTAA-GCATCTA
793020 TTTAACGTAATAGGT-AGCATCTA
1 TTTAACGTAATAGGTAAGCATCTA
*
793043 TTTAACATAATAGGTA
1 TTTAACGTAATAGGTA
793059 GTAGCACCTA
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
21 2 0.06
22 2 0.06
23 31 0.89
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.35
Consensus pattern (24 bp):
TTTAACGTAATAGGTAAGCATCTA
Found at i:793059 original size:23 final size:21
Alignment explanation
Indices: 792988--793059 Score: 83
Period size: 23 Copynumber: 3.2 Consensus size: 21
792978 TAAACAAACC
792988 GGTAGC-TAGTTTAACGTAATA
1 GGTAGCTTA-TTTAACGTAATA
793009 GGTAACGCTTATTTAACGTAATA
1 GGT-A-GCTTATTTAACGTAATA
*
793032 GGTAGCATCTATTTAACATAATA
1 GGTAGC-T-TATTTAACGTAATA
793055 GGTAG
1 GGTAG
793060 TAGCACCTAT
Statistics
Matches: 45, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
21 5 0.11
22 3 0.07
23 35 0.78
24 2 0.04
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.33
Consensus pattern (21 bp):
GGTAGCTTATTTAACGTAATA
Found at i:793200 original size:74 final size:75
Alignment explanation
Indices: 793065--793230 Score: 199
Period size: 74 Copynumber: 2.2 Consensus size: 75
793055 GGTAGTAGCA
* * * * ** *
793065 CCTATTTTATTTTACCGTTTACATTATTAGTAACATTTAAACAAACCGGTCGGTATTTTAACGTA
1 CCTATTTTATTTTACCGTTTACATTATTAGCAACATTCAAACAAACCGATAGGTAGCTTAACATA
793130 ATAAATAACG
66 ATAAATAACG
* * * *
793140 CCTATTTTATTTTACCG-TTACATTATTTGCAACCTTCAAACAAATCGATATGTAGCTTAACATA
1 CCTATTTTATTTTACCGTTTACATTATTAGCAACATTCAAACAAACCGATAGGTAGCTTAACATA
** *
793204 ATAGGTAGCG
66 ATAAATAACG
793214 CCTATTTTATTTTACCG
1 CCTATTTTATTTTACCG
793231 GTTAAGTTTT
Statistics
Matches: 77, Mismatches: 14, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
74 60 0.78
75 17 0.22
ACGTcount: A:0.32, C:0.18, G:0.11, T:0.39
Consensus pattern (75 bp):
CCTATTTTATTTTACCGTTTACATTATTAGCAACATTCAAACAAACCGATAGGTAGCTTAACATA
ATAAATAACG
Found at i:794703 original size:54 final size:54
Alignment explanation
Indices: 794629--795225 Score: 835
Period size: 54 Copynumber: 11.3 Consensus size: 54
794619 TCCATGGTTT
* * *
794629 TGCACACATAGTGCCGATACGGTAATTCACAAACTCATTATGAATTACTTGGGG
1 TGCACACATAGTGCCAATACGGTAATTCATAAACTCATTATGAATTACGTGGGG
* ** *
794683 TGCACACAAAGTATCAATACGGTAATTCATAAACTCATTGTGAATTACGTGGGG
1 TGCACACATAGTGCCAATACGGTAATTCATAAACTCATTATGAATTACGTGGGG
* * *
794737 TGCACACATAGTGTCAATACAGTAATTCATAAACTCATTATGAATTACGTAGGG
1 TGCACACATAGTGCCAATACGGTAATTCATAAACTCATTATGAATTACGTGGGG
* * * ** *
794791 TGCGCACATATTGACAATATAGTAATTCATAAACTCATTATAAATTACGTGGGG
1 TGCACACATAGTGCCAATACGGTAATTCATAAACTCATTATGAATTACGTGGGG
794845 TGCACACATAGTGCCAATACGGTAATTCATAAACTCATTATGAATTACGTGGGG
1 TGCACACATAGTGCCAATACGGTAATTCATAAACTCATTATGAATTACGTGGGG
*
794899 TGCACACATAGTGCCAATACAGTAATTCATAAACTCATTAT-AA--A-----GG
1 TGCACACATAGTGCCAATACGGTAATTCATAAACTCATTATGAATTACGTGGGG
* * *
794945 TGCACACATAGTGCTAATACTGTAATTCATAAACTCATTATGAATTACGTGGAG
1 TGCACACATAGTGCCAATACGGTAATTCATAAACTCATTATGAATTACGTGGGG
* * *
794999 TGCACACATAGTGCCAATACGGTAATTCATGAACTTATTATGAATTATGTGGGG
1 TGCACACATAGTGCCAATACGGTAATTCATAAACTCATTATGAATTACGTGGGG
* * *
795053 TGCACACATAGTGCGAATACGGTAATTCATAAACTTATTATGAATTACATGGGG
1 TGCACACATAGTGCCAATACGGTAATTCATAAACTCATTATGAATTACGTGGGG
*
795107 TGCACACATAGTGCCAATATGGTAATTCATAAACTCATTATGAATTACGTGGGG
1 TGCACACATAGTGCCAATACGGTAATTCATAAACTCATTATGAATTACGTGGGG
*
795161 TGCACACA-AGTGCCAATACGG----TCATAAACTCATTATGAATTAAGTGGGG
1 TGCACACATAGTGCCAATACGGTAATTCATAAACTCATTATGAATTACGTGGGG
*
795210 TGCAC-CATAATGCCAA
1 TGCACACATAGTGCCAA
795226 AATGGTAAAA
Statistics
Matches: 489, Mismatches: 45, Indels: 23
0.88 0.08 0.04
Matches are distributed among these distances:
46 41 0.08
47 2 0.00
48 2 0.00
49 40 0.08
51 1 0.00
53 14 0.03
54 389 0.80
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.29
Consensus pattern (54 bp):
TGCACACATAGTGCCAATACGGTAATTCATAAACTCATTATGAATTACGTGGGG
Found at i:795074 original size:208 final size:211
Alignment explanation
Indices: 794605--795218 Score: 757
Period size: 208 Copynumber: 2.9 Consensus size: 211
794595 TGAATATTAC
* * ** *
794605 AACTCATTATAAATTCCATGGTTTTGCACACATAGTGCCG-ATACGGTAATTCACAAACTCATTA
1 AACTCATTATAAATTACGTGG-GGTGCACACATAGTG-CGAATACGGTAATTCATAAACTCATTA
* * ** *
794669 TGAATTACTTGGGGTGCACACAAAGTATCAATACGGTAATTCATAAACTCATTGTGAATTACGTG
64 TGAATTACATGGGGTGCACACATAGTGCCAATACGGTAATTCATAAACTCATTATGAA-TA----
*
794734 GGGTGCACACATAGTGTCAATACAGTAATTCATAAACTCATTATGAATTACGTAGGGTGCGCACA
124 GGGTGCACACATAGTGTCAATACAGTAATTCATAAACTCATTATGAATTACGTAGGGTGCACACA
* *
794799 TATTGACAATATAGTAATTCATA
189 TAGTGACAATACAGTAATTCATA
*
794822 AACTCATTATAAATTACGTGGGGTGCACACATAGTGCCAATACGGTAATTCATAAACTCATTATG
1 AACTCATTATAAATTACGTGGGGTGCACACATAGTGCGAATACGGTAATTCATAAACTCATTATG
* *
794887 AATTACGTGGGGTGCACACATAGTGCCAATACAGTAATTCATAAACTCATTAT-AA-A-GGTGCA
66 AATTACATGGGGTGCACACATAGTGCCAATACGGTAATTCATAAACTCATTATGAATAGGGTGCA
*
794949 CACATAGTG-CTAATACTGTAATTCATAAACTCATTATGAATTACGT-GGAGTGCACACATAGTG
131 CACATAGTGTC-AATACAGTAATTCATAAACTCATTATGAATTACGTAGG-GTGCACACATAGTG
* * *
795012 CCAATACGGTAATTCATG
194 ACAATACAGTAATTCATA
* * * *
795030 AACTTATTATGAATTATGTGGGGTGCACACATAGTGCGAATACGGTAATTCATAAACTTATTATG
1 AACTCATTATAAATTACGTGGGGTGCACACATAGTGCGAATACGGTAATTCATAAACTCATTATG
*
795095 AATTACATGGGGTGCACACATAGTGCCAATATGGTAATTCATAAACTCATTATGAATTACGTGGG
66 AATTACATGGGGTGCACACATAGTGCCAATACGGTAATTCATAAACTCATTATGAA-TA----GG
* * * *
795160 GTGCACACA-AGTGCCAATAC-G---GTCATAAACTCATTATGAATTAAGTGGGGTGCAC-CATA
126 GTGCACACATAGTGTCAATACAGTAATTCATAAACTCATTATGAATTACGTAGGGTGCACACATA
795219 ATGCCAAAAT
Statistics
Matches: 355, Mismatches: 29, Indels: 33
0.85 0.07 0.08
Matches are distributed among these distances:
207 3 0.01
208 185 0.52
209 2 0.01
210 4 0.01
211 30 0.08
212 2 0.01
213 1 0.00
214 1 0.00
215 12 0.03
216 96 0.27
217 19 0.05
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.29
Consensus pattern (211 bp):
AACTCATTATAAATTACGTGGGGTGCACACATAGTGCGAATACGGTAATTCATAAACTCATTATG
AATTACATGGGGTGCACACATAGTGCCAATACGGTAATTCATAAACTCATTATGAATAGGGTGCA
CACATAGTGTCAATACAGTAATTCATAAACTCATTATGAATTACGTAGGGTGCACACATAGTGAC
AATACAGTAATTCATA
Found at i:795108 original size:262 final size:265
Alignment explanation
Indices: 794629--795179 Score: 799
Period size: 262 Copynumber: 2.1 Consensus size: 265
794619 TCCATGGTTT
* *
794629 TGCACACATAGTGCCGATACGGTAATTCACAAACTCATTATGAATTACTTGGGGTGCACACAAAG
1 TGCACACATAGTGCCAATACAGTAATTCACAAACTCATTATGAA-TA----GGGTGCACACAAAG
* * *
794694 TATCAATACGGTAATTCATAAACTCATTGTGAATTACGTGGGGTGCACACATAGTGTCAATACAG
61 TATCAATACGGTAATTCATAAACTCATTATGAATTACGTGGAGTGCACACATAGTGCCAATACAG
* * *
794759 TAATTCATAAACTCATTATGAATTACGTAGGGTGCGCACATATTGACAATATAGTAATTCATAAA
126 TAATTCATAAACTCATTATGAATTACGTAGGGTGCACACATAGTGACAATACAGTAATTCATAAA
*
794824 CTCATTATAAATTACGTGGGGTGCACACATAGTGCCAATACGGTAATTCATAAACTCATTATGAA
191 CTCATTATAAATTACATGGGGTGCACACATAGTGCCAATACGGTAATTCATAAACTCATTATGAA
794889 TTACGTGGGG
256 TTACGTGGGG
* * *
794899 TGCACACATAGTGCCAATACAGTAATTCATAAACTCATTAT-AA-A-GGTGCACACATAGT-GCT
1 TGCACACATAGTGCCAATACAGTAATTCACAAACTCATTATGAATAGGGTGCACACAAAGTATC-
* *
794960 AATACTGTAATTCATAAACTCATTATGAATTACGTGGAGTGCACACATAGTGCCAATACGGTAAT
65 AATACGGTAATTCATAAACTCATTATGAATTACGTGGAGTGCACACATAGTGCCAATACAGTAAT
* * * * * *
795025 TCATGAACTTATTATGAATTATGTGGGGTGCACACATAGTG-CGAATACGGTAATTCATAAACTT
130 TCATAAACTCATTATGAATTACGTAGGGTGCACACATAGTGAC-AATACAGTAATTCATAAACTC
* *
795089 ATTATGAATTACATGGGGTGCACACATAGTGCCAATATGGTAATTCATAAACTCATTATGAATTA
194 ATTATAAATTACATGGGGTGCACACATAGTGCCAATACGGTAATTCATAAACTCATTATGAATTA
795154 CGTGGGG
259 CGTGGGG
795161 TGCACACA-AGTGCCAATAC
1 TGCACACATAGTGCCAATAC
795180 GGTCATAAAC
Statistics
Matches: 257, Mismatches: 22, Indels: 13
0.88 0.08 0.04
Matches are distributed among these distances:
261 13 0.05
262 203 0.79
267 1 0.00
269 2 0.01
270 38 0.15
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.29
Consensus pattern (265 bp):
TGCACACATAGTGCCAATACAGTAATTCACAAACTCATTATGAATAGGGTGCACACAAAGTATCA
ATACGGTAATTCATAAACTCATTATGAATTACGTGGAGTGCACACATAGTGCCAATACAGTAATT
CATAAACTCATTATGAATTACGTAGGGTGCACACATAGTGACAATACAGTAATTCATAAACTCAT
TATAAATTACATGGGGTGCACACATAGTGCCAATACGGTAATTCATAAACTCATTATGAATTACG
TGGGG
Found at i:798981 original size:129 final size:129
Alignment explanation
Indices: 798783--799145 Score: 507
Period size: 129 Copynumber: 2.8 Consensus size: 129
798773 CGATATTGAG
* *
798783 AATAATAATATCTTTTCATTTCGATTGTAGTAATAAATGACTACTTTAAGGTATAAGAGGTCATT
1 AATAATAATATC--TTCATTTCGATCGGAGTAATAAATGACTACTTTAAGGTATAAGAGGTCATT
*
798848 TATTCTCGATTGGAAATCATTAGATATTATCATTTTCACTAGAATCGATATTGATTTTTAAG-GC
64 TATTCTCGATTGGAAATCATTAGATATTATCGTTTTCACTAGAATCGATATTGATTTTTAAGAG-
798912 GA
128 GA
*
798914 AATAATAATATCTTCATTTCGATCGGGGTAATAAATGACTACTTTAAGGTATAAGAGGTCATTTA
1 AATAATAATATCTTCATTTCGATCGGAGTAATAAATGACTACTTTAAGGTATAAGAGGTCATTTA
* * * *
798979 TTCTGGATTGGAAATCATTAGATATTATTGTTTTCACTCGAATTGATATTGATTTTTAAGATGGA
66 TTCTCGATTGGAAATCATTAGATATTATCGTTTTCACTAGAATCGATATTGATTTTTAAGA-GGA
* ** *
799044 ATAGTAAT-ATATCTTCATTTCGATCAGGAGTAATAAATGATTGTTTTAAGGCATGAA-AGGTCA
1 A-A-TAATAATATCTTCATTTCGATC-GGAGTAATAAATGACTACTTTAAGGTAT-AAGAGGTCA
* *
799107 TTTATTCTCGATTGGAAATAATTAGATATCATCGTTTTC
62 TTTATTCTCGATTGGAAATCATTAGATATTATCGTTTTC
799146 TCTCTTAAAA
Statistics
Matches: 209, Mismatches: 17, Indels: 11
0.88 0.07 0.05
Matches are distributed among these distances:
129 105 0.50
130 3 0.01
131 31 0.15
132 68 0.33
133 2 0.01
ACGTcount: A:0.34, C:0.10, G:0.16, T:0.40
Consensus pattern (129 bp):
AATAATAATATCTTCATTTCGATCGGAGTAATAAATGACTACTTTAAGGTATAAGAGGTCATTTA
TTCTCGATTGGAAATCATTAGATATTATCGTTTTCACTAGAATCGATATTGATTTTTAAGAGGA
Found at i:802996 original size:15 final size:16
Alignment explanation
Indices: 802971--803000 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
802961 GTTTCCCATT
802971 TAAATTTTTTGAAAAA
1 TAAATTTTTTGAAAAA
802987 TAAA-TTTTTGAAAA
1 TAAATTTTTTGAAAA
803001 GTAACCAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.50, C:0.00, G:0.07, T:0.43
Consensus pattern (16 bp):
TAAATTTTTTGAAAAA
Found at i:803664 original size:136 final size:134
Alignment explanation
Indices: 803237--803944 Score: 796
Period size: 133 Copynumber: 5.3 Consensus size: 134
803227 GAAAATCAAA
803237 CTCGATTCAATCTTCCCTGAAGAACAGTGGAATGAATCAACATTTCCAGATATGATTTTCCCTCA
1 CTCGATTCAATCTTCCCTGAAGAACAGTGGAATGAATCAACATTTCCAGATATGATTTTCCCTCA
* * * ** *
803302 AGAAGTAACGGAACAAATCCCTCTTTTTTCCATATTTGATCTTCCCTAAGGAGTAGTAGAACAAG
66 AGAAGCAGCGGAACAAATCCCT-TTTTTTCCAGATTTGATCTTCCCTAAGGAACAGTGGAACAAG
803367 TCTAC
130 TCTAC
* * * *
803372 CTCGATTCAATCTTCCCTGAAGAACAATGGAATAAATCAATATTTCCATATATGATTTTCCCTCA
1 CTCGATTCAATCTTCCCTGAAGAACAGTGGAATGAATCAACATTTCCAGATATGATTTTCCCTCA
* * * * * *
803437 AGAAGTAGAGGAACAGATCCC-TTTTTTCCATATTTGATTTTCCCTAAGGAACAGTGGAAAAAGT
66 AGAAGCAGCGGAACAAATCCCTTTTTTTCCAGATTTGATCTTCCCTAAGGAACAGTGGAACAAGT
*
803501 TTAC
131 CTAC
* * ** * *
803505 CTCGATTCAATCTTCCCTAAAGAATAGTGGAATGAATCAACATTTATAGATCTGAATTTCCCTCA
1 CTCGATTCAATCTTCCCTGAAGAACAGTGGAATGAATCAACATTTCCAGATATGATTTTCCCTCA
* * *
803570 GGAAGCATCGGAACAAATCCCCTTTTTTTTCCAGATTTGATCTTCCCTGAGGAACAGTGGAACAA
66 AGAAGCAGCGGAACAAAT-CCC-TTTTTTTCCAGATTTGATCTTCCCTAAGGAACAGTGGAACAA
*
803635 GTCTGC
129 GTCTAC
* * *
803641 CTCGATTCAATCTTTCTTGAAGAACAGTGGAATGAATCAACATTTCCAGATATGATTTTCCCTAA
1 CTCGATTCAATCTTCCCTGAAGAACAGTGGAATGAATCAACATTTCCAGATATGATTTTCCCTCA
** * * * * * * *
803706 AGAAGCAGCATAACATAT-CCTTTTTTTCTAGATTTGATTTTCCCTGAGGAATAATGGAACAAGC
66 AGAAGCAGCGGAACAAATCCCTTTTTTTCCAGATTTGATCTTCCCTAAGGAACAGTGGAACAAGT
*
803770 CTGC
131 CTAC
* * *
803774 CTCGATTCAATCTTCCCT-AAGAACAATGGAATGAATCAA-ATTTCTAGATCTGATTTTCCCTCA
1 CTCGATTCAATCTTCCCTGAAGAACAGTGGAATGAATCAACATTTCCAGATATGATTTTCCCTCA
* * *** * * * * * ** * *
803837 AGAAGCAGCGGAACATATCACTCACTTTCAAGATTTAAT-TTTCCTGAGTAGTAGAGGAACAAAT
66 AGAAGCAGCGGAACAAATCCCTTTTTTTCCAGATTTGATCTTCCCTAAGGAACAGTGGAACAAGT
* *
803901 TTGC
131 CTAC
* * *
803905 CTCGATTTAATCTTCCCTAAAGAACGGTGGAATGAATCAA
1 CTCGATTCAATCTTCCCTGAAGAACAGTGGAATGAATCAA
803945 TGTTTCTCGA
Statistics
Matches: 490, Mismatches: 78, Indels: 13
0.84 0.13 0.02
Matches are distributed among these distances:
131 75 0.15
132 53 0.11
133 168 0.34
134 5 0.01
135 79 0.16
136 110 0.22
ACGTcount: A:0.32, C:0.21, G:0.16, T:0.31
Consensus pattern (134 bp):
CTCGATTCAATCTTCCCTGAAGAACAGTGGAATGAATCAACATTTCCAGATATGATTTTCCCTCA
AGAAGCAGCGGAACAAATCCCTTTTTTTCCAGATTTGATCTTCCCTAAGGAACAGTGGAACAAGT
CTAC
Found at i:803733 original size:269 final size:267
Alignment explanation
Indices: 803237--803851 Score: 847
Period size: 269 Copynumber: 2.3 Consensus size: 267
803227 GAAAATCAAA
* *
803237 CTCGATTCAATCTTCCCTGAAGAACAGTGGAATGAATCAACATTTCCAGATATGATTTTCCCTCA
1 CTCGATTCAATCTTCCCT-AAGAACAGTGGAATGAATCAACATTTCTAGATCTGATTTTCCCTCA
* * **
803302 AGAAGTAACGGAACAAATCCCTCTTTTTTCCATATTTGATCTTCCCTAAGGAGTAGTAGAACAAG
65 AGAAGCAACGGAACAAATCCCTCTTTTTTCCAGATTTGATCTTCCCTAAGGAACAGTAGAACAAG
* *
803367 TCTACCTCGATTCAATCTTCCCTGAAGAACAATGGAATAAATCAATATTTCCATATATGATTTTC
130 TCTACCTCGATTCAATCTTCCCTGAAGAACAATGGAATAAATCAACATTTCCAGATATGATTTTC
* * * *
803432 CCTCAAGAAGTAGAGGAACAGATCCCTTTTTTCCATATTTGATTTTCCCTAAGGAACAGTGGAAA
195 CCTAAAGAAGCAGAGGAACAGATCCCTTTTTTCCAGATTTGATTTTCCCTAAGGAACAATGGAAA
**
803497 AAGTTTAC
260 AAGCCTAC
* * *
803505 CTCGATTCAATCTTCCCTAAAGAATAGTGGAATGAATCAACATTTATAGATCTGAATTTCCCTCA
1 CTCGATTCAATCTTCCCT-AAGAACAGTGGAATGAATCAACATTTCTAGATCTGATTTTCCCTCA
* * * * *
803570 GGAAGCATCGGAACAAATCCCCTTTTTTTTCCAGATTTGATCTTCCCTGAGGAACAGTGGAACAA
65 AGAAGCAACGGAACAAAT-CCCTCTTTTTTCCAGATTTGATCTTCCCTAAGGAACAGTAGAACAA
* * * * *
803635 GTCTGCCTCGATTCAATCTTTCTTGAAGAACAGTGGAATGAATCAACATTTCCAGATATGATTTT
129 GTCTACCTCGATTCAATCTTCCCTGAAGAACAATGGAATAAATCAACATTTCCAGATATGATTTT
* * * * * *
803700 CCCTAAAGAAGCAGCA-TAACATATCCTTTTTTTCTAGATTTGATTTTCCCTGAGGAATAATGGA
194 CCCTAAAGAAGCAG-AGGAACAGATCCCTTTTTTCCAGATTTGATTTTCCCTAAGGAACAATGGA
* *
803764 ACAAGCCTGC
258 AAAAGCCTAC
*
803774 CTCGATTCAATCTTCCCTAAGAACAATGGAATGAATCAA-ATTTCTAGATCTGATTTTCCCTCAA
1 CTCGATTCAATCTTCCCTAAGAACAGTGGAATGAATCAACATTTCTAGATCTGATTTTCCCTCAA
*
803838 GAAGCAGCGGAACA
66 GAAGCAACGGAACA
803852 TATCACTCAC
Statistics
Matches: 303, Mismatches: 42, Indels: 5
0.87 0.12 0.01
Matches are distributed among these distances:
267 35 0.12
268 93 0.31
269 174 0.57
270 1 0.00
ACGTcount: A:0.32, C:0.21, G:0.15, T:0.31
Consensus pattern (267 bp):
CTCGATTCAATCTTCCCTAAGAACAGTGGAATGAATCAACATTTCTAGATCTGATTTTCCCTCAA
GAAGCAACGGAACAAATCCCTCTTTTTTCCAGATTTGATCTTCCCTAAGGAACAGTAGAACAAGT
CTACCTCGATTCAATCTTCCCTGAAGAACAATGGAATAAATCAACATTTCCAGATATGATTTTCC
CTAAAGAAGCAGAGGAACAGATCCCTTTTTTCCAGATTTGATTTTCCCTAAGGAACAATGGAAAA
AGCCTAC
Found at i:806364 original size:131 final size:131
Alignment explanation
Indices: 806157--806520 Score: 482
Period size: 131 Copynumber: 2.8 Consensus size: 131
806147 CGATATTGAG
* * *** * * * *
806157 AATAGTAATATCTTTTCATTTCGGTTGGAGTGATAAATGACTACTTTAAGGTATACGAGGTCATT
1 AATAGTAATATCTCTTCATTTCGATCAAAGTAATAAATGATTTCTTTAAGGTATAAGAGGTCATT
*
806222 TATTCTCGATTGGAAATCATTAGATATTATCGTTTTCACTCGGATCGATATTAACTTTTAAGACG
66 TATTCTCGATTGGAAATCATTAGATATTATCGTTTTCACTCGAATCGATATTAACTTTTAAGACG
806287 A
131 A
* *
806288 AATATTAATTTCTCTTCATCTT-GATCAAAGTAATAAATGATTTCTTTAAGGTATAAGAGGTCAT
1 AATAGTAATATCTCTTCAT-TTCGATCAAAGTAATAAATGATTTCTTTAAGGTATAAGAGGTCAT
* * * *
806352 TTATTCTTGATTGGAAATCATTAGATATTATCATTTTCACTCGAATCGATATTGATTTTTAAGAC
65 TTATTCTCGATTGGAAATCATTAGATATTATCGTTTTCACTCGAATCGATATTAACTTTTAAGAC
*
806417 GG
130 GA
** * *
806419 AATAGTAATATCTCTTCATTTCGATCGGAGTAATAAATGACTGT-TTTAAGGCATGAA-AGGTCA
1 AATAGTAATATCTCTTCATTTCGATCAAAGTAATAAATGA-TTTCTTTAAGGTAT-AAGAGGTCA
*
806482 TTTATTCTCGATTGGAAATAATTAGATATTATCGTTTTC
64 TTTATTCTCGATTGGAAATCATTAGATATTATCGTTTTC
806521 TCTCTTAAAA
Statistics
Matches: 203, Mismatches: 26, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
130 2 0.01
131 195 0.96
132 6 0.03
ACGTcount: A:0.32, C:0.12, G:0.16, T:0.40
Consensus pattern (131 bp):
AATAGTAATATCTCTTCATTTCGATCAAAGTAATAAATGATTTCTTTAAGGTATAAGAGGTCATT
TATTCTCGATTGGAAATCATTAGATATTATCGTTTTCACTCGAATCGATATTAACTTTTAAGACG
A
Found at i:807396 original size:2 final size:2
Alignment explanation
Indices: 807389--807424 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
807379 ATTATTTCAC
807389 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
807425 TAAATTATAG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:810530 original size:15 final size:14
Alignment explanation
Indices: 810510--810545 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
810500 ATTAAATAAA
810510 TTTTAAATTTATATT
1 TTTTAAATTTA-ATT
810525 TTTTAAATTTAATT
1 TTTTAAATTTAATT
*
810539 ATTTAAA
1 TTTTAAA
810546 ATAATCATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 9 0.45
15 11 0.55
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (14 bp):
TTTTAAATTTAATT
Found at i:810543 original size:14 final size:15
Alignment explanation
Indices: 810511--810574 Score: 60
Period size: 14 Copynumber: 4.3 Consensus size: 15
810501 TTAAATAAAT
*
810511 TTTAAATTTATATTT
1 TTTAAATTTATATTA
810526 TTTAAATTTA-ATTA
1 TTTAAATTTATATTA
* *
810540 TTTAAAATAATCATTA
1 TTTAAATTTAT-ATTA
* *
810556 TTAAAATTTAAATT-
1 TTTAAATTTATATTA
810570 TTTAA
1 TTTAA
810575 TTATAAGAAA
Statistics
Matches: 39, Mismatches: 8, Indels: 5
0.75 0.15 0.10
Matches are distributed among these distances:
14 15 0.38
15 13 0.33
16 11 0.28
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.55
Consensus pattern (15 bp):
TTTAAATTTATATTA
Found at i:812082 original size:13 final size:13
Alignment explanation
Indices: 812064--812088 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
812054 AGATATATAT
812064 ATATATATATTAC
1 ATATATATATTAC
812077 ATATATATATTA
1 ATATATATATTA
812089 TATCTTCAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (13 bp):
ATATATATATTAC
Found at i:812181 original size:17 final size:17
Alignment explanation
Indices: 812127--812173 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 17
812117 ATACCGTATT
* **
812127 ATATATAATATATTTTA
1 ATATATACTATATAATA
*
812144 AAATATACTATATAATA
1 ATATATACTATATAATA
812161 ATATATACTATAT
1 ATATATACTATAT
812174 CTATATATTT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (17 bp):
ATATATACTATATAATA
Found at i:812221 original size:2 final size:2
Alignment explanation
Indices: 812216--812263 Score: 51
Period size: 2 Copynumber: 23.5 Consensus size: 2
812206 CAAAACACAC
* * * *
812216 AT AT AT AT AT AT AT AT AT TT AA AA AT GAT AT AT GT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT AT AT AT AT AT
812259 AT AT A
1 AT AT A
812264 CTAATTTTAT
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
2 37 0.95
3 2 0.05
ACGTcount: A:0.50, C:0.00, G:0.04, T:0.46
Consensus pattern (2 bp):
AT
Found at i:812311 original size:22 final size:25
Alignment explanation
Indices: 812281--812327 Score: 64
Period size: 22 Copynumber: 2.0 Consensus size: 25
812271 TATAAATAAA
812281 TTTTAAAAA-ATA-ATACA-TATAT
1 TTTTAAAAATATATATACACTATAT
*
812303 TTTTCAAAATATATATACACTATAT
1 TTTTAAAAATATATATACACTATAT
812328 ATATATATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 8 0.38
23 3 0.14
24 5 0.24
25 5 0.24
ACGTcount: A:0.49, C:0.09, G:0.00, T:0.43
Consensus pattern (25 bp):
TTTTAAAAATATATATACACTATAT
Found at i:812350 original size:15 final size:15
Alignment explanation
Indices: 812332--812369 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
812322 CTATATATAT
812332 ATATATATTAAAATA
1 ATATATATTAAAATA
**
812347 ATATATATTATTATA
1 ATATATATTAAAATA
812362 A-ATATATT
1 ATATATATT
812370 TTCAAAATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 7 0.33
15 14 0.67
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
ATATATATTAAAATA
Found at i:812350 original size:19 final size:19
Alignment explanation
Indices: 812328--812365 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
812318 TACACTATAT
812328 ATATATATATATTA-AAATA
1 ATATATAT-TATTATAAATA
812347 ATATATATTATTATAAATA
1 ATATATATTATTATAAATA
812366 TATTTTCAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (19 bp):
ATATATATTATTATAAATA
Found at i:813400 original size:23 final size:21
Alignment explanation
Indices: 813352--813409 Score: 64
Period size: 23 Copynumber: 2.7 Consensus size: 21
813342 AACATTCACG
*
813352 ATGGTACCGATAC-TCCTCCT
1 ATGGTATCGATACTTCCTCCT
*
813372 AGGGTATCGATACTTCCCTTCCT
1 ATGGTATCGATACTT-CC-TCCT
*
813395 ATGGTATTGATACTT
1 ATGGTATCGATACTT
813410 TTCTGAGTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
20 11 0.35
21 1 0.03
22 2 0.06
23 17 0.55
ACGTcount: A:0.21, C:0.26, G:0.17, T:0.36
Consensus pattern (21 bp):
ATGGTATCGATACTTCCTCCT
Found at i:819328 original size:21 final size:21
Alignment explanation
Indices: 819302--819349 Score: 96
Period size: 21 Copynumber: 2.3 Consensus size: 21
819292 CTACTGTTAC
819302 TGATGAGAGTCAACCTTAGAT
1 TGATGAGAGTCAACCTTAGAT
819323 TGATGAGAGTCAACCTTAGAT
1 TGATGAGAGTCAACCTTAGAT
819344 TGATGA
1 TGATGA
819350 TAGTTGCCGC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.29
Consensus pattern (21 bp):
TGATGAGAGTCAACCTTAGAT
Found at i:819912 original size:81 final size:81
Alignment explanation
Indices: 819823--821131 Score: 1666
Period size: 81 Copynumber: 16.6 Consensus size: 81
819813 CGTCTAGAGC
* * * * ** **
819823 ATTTAACCTTTCATCTAACTGGCATGATTGACACCTTTATGCCAAATGCACAGCTAGGCTTTTGG
1 ATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAACTAGGCCATTAA
*
819888 TCTTTTACTCAAAGGC
66 TCTTTTACTCAAAGGT
* * *
819904 ATTTAACCTTTCATCTAACTGGCATGATTGACACTTTTCTG-CTAAAAGCACAACTAGGCCATTA
1 ATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGTC-AAATGCACAACTAGGCCATTA
819968 ATCTTTTACTCAAAGGT
65 ATCTTTTACTCAAAGGT
* * **
819985 ATTTAACCTTTCATCTAA-TAGCATAATTGACACATTTCTGTCAAATGCACATTTAGGCCATTAA
1 ATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAACTAGGCCATTAA
*
820049 TATTTTACTCAAAGGT
66 TCTTTTACTCAAAGGT
* * *
820065 ATTTAACCTTTCATCTAACTGGCATAATTGACATCTTTCTGTCAAATGCACAGCAAGGCCATTAA
1 ATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAACTAGGCCATTAA
*
820130 TATTTTACTCAAAGGT
66 TCTTTTACTCAAAGGT
* * *
820146 ATTTAACCTTTCATCTAACTGGCATAATTGACATCTTTCTATCAAATGCACAGCTAGGCCATTAA
1 ATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAACTAGGCCATTAA
* *
820211 ACTTTTACTAAAAGGT
66 TCTTTTACTCAAAGGT
* * * *
820227 ATTTAATCTTTCATCTAATTGGCATAATTGACACATTTCTATCAAATGCACAACTAGGCCATTAA
1 ATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAACTAGGCCATTAA
820292 TCTTTTACTCAAA-G-
66 TCTTTTACTCAAAGGT
* *
820306 --------TTTCATCTAACTGGCATAATTGACACCTTTGTGT-AAGATGCAAAACTAGGCCATTA
1 ATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAA-ATGCACAACTAGGCCATTA
820362 ATCTTTTACTCAAA-G-
65 ATCTTTTACTCAAAGGT
*
820377 --------TTTCATCTAACTGGCATAATTGACACCTTTGTGT-AAATGCA-AACTAGGCCATTAA
1 ATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAACTAGGCCATTAA
820432 TCTTTTACTCAAAGGT
66 TCTTTTACTCAAAGGT
** * * * *
820448 ATTTAATATTTCATCTAACTGGCATAATTGACACTTTTTTATCAAATGCACAGCTAGGCCATTAA
1 ATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAACTAGGCCATTAA
*
820513 GCTTTTACTCAAAGGT
66 TCTTTTACTCAAAGGT
* * * *
820529 ATTTAACCTTTCATCTAACTTGCATAATTGAAAACTTTCTGTCAAATGCACAACTAGGTCATTAA
1 ATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAACTAGGCCATTAA
820594 TCTTTTACTCAAAGGT
66 TCTTTTACTCAAAGGT
* * * * * *
820610 ATTTAACCATTCATCTAACTGGCATAATTGATACATTTCTGTCAGATGCATAGCTAGGCCATTAA
1 ATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAACTAGGCCATTAA
820675 TCTTTTACTCAAAGGT
66 TCTTTTACTCAAAGGT
* * *
820691 ATTTAACCTTTCATCTAACTGGCATAA-TG--ATCTTTCTGTC-AATGCATAGCTAGGCCATTAA
1 ATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAACTAGGCCATTAA
820752 TCTTTTA-TCAAAGGT
66 TCTTTTACTCAAAGGT
* * * *
820767 ATTTAACCTTTCATCTAA-TGGCATAA-TGACA--TTT-TCTCAAATGCACATCTAGACAATTAA
1 ATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAACTAGGCCATTAA
*
820827 TATTTTACTCAAAGGT
66 TCTTTTACTCAAAGGT
* * *
820843 ATTTAACCTTTCATCTAACTGGCATAATTGACACATTTCTGTTAGATGCACAACTAGGCCATTAA
1 ATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAACTAGGCCATTAA
*
820908 TCCTTTACTCAAAGGT
66 TCTTTTACTCAAAGGT
* * * *
820924 ATTTAACCTTTCATCTAACTGACATAGTTGACA-CTATTCTTTCAAATGCACAACTAGGCTATTA
1 ATTTAACCTTTCATCTAACTGGCATAATTGACACCT-TTCTGTCAAATGCACAACTAGGCCATTA
*
820988 ATATTTTACTCAAAGGT
65 ATCTTTTACTCAAAGGT
* * *
821005 ATTTAACCTTTCATCTAACTGGCATAATTGACACATTTCTGTCAAATGCACAGCTAAGCCATTAA
1 ATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAACTAGGCCATTAA
821070 TCTTTTACTCAAAGGT
66 TCTTTTACTCAAAGGT
* * * *
821086 GTTTAACCTTTCATCTAACTGGAATAAATGATA-CTTTCTGTCAAAT
1 ATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAAT
821132 ATACATCTAG
Statistics
Matches: 1097, Mismatches: 104, Indels: 55
0.87 0.08 0.04
Matches are distributed among these distances:
69 27 0.02
70 8 0.01
71 99 0.09
74 3 0.00
75 36 0.03
76 52 0.05
77 36 0.03
78 14 0.01
79 31 0.03
80 98 0.09
81 692 0.63
82 1 0.00
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (81 bp):
ATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAACTAGGCCATTAA
TCTTTTACTCAAAGGT
Found at i:820941 original size:395 final size:397
Alignment explanation
Indices: 819823--821131 Score: 1684
Period size: 395 Copynumber: 3.3 Consensus size: 397
819813 CGTCTAGAGC
* * * * ** **
819823 ATTTAACCTTTCATCTAACTGGCATGATTGACACCTTTATGCCAAATGCACAGCTAGGCTTTTGG
1 ATTTAACCTTTCATCTAACTGGCATAATTGACACATTTCTGTCAAATGCACAGCTAGGCCATTAA
* * * * *
819888 TCTTTTACTCAAAGGCATTTAACCTTTCATCTAACTGGCATGATTGACACTTTTCTGCTAAAAGC
66 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAAATGA-TC-TTTCTG-TAAATGC
* *
819953 ACAACTAGGCCATTAATCTTTTACTCAAAGGTATTTAACCTTTCATCTAATAGCATAATTGACAC
128 AAAACTAGGCCATTAATCTTTTACTCAAAGGTATTTAACCTTTCATCTAATGGCATAATTG--AC
*
820018 ATTTCTGTCAAATGCACATTTAGGCCATTAATATTTTACTCAAAGGTATTTAACCTTTCATCTAA
191 ATTTCTGTCAAATGCACATCTAGGCCATTAATATTTTACTCAAAGGTATTTAACCTTTCATCTAA
* *
820083 CTGGCATAATTGACATCTTTCTGTCAAATGCACAGCAAGGCCATTAATATTTTACTCAAAGGTAT
256 CTGGCATAATTGACA-CTTTCTGTCAAATGCACAGCTAGGCCATTAATCTTTTACTCAAAGGTAT
* * * * *
820148 TTAACCTTTCATCTAACTGGCATAATTGACATCTTTCTATCAAATGCACAGCTAGGCCATTAAAC
320 TTAACCTTTCATCTAACTTGCATAATTGAAAACTTTCTATCAAATGCACAACTAGG-CATTAATC
*
820213 TTTTACTAAAAGGT
384 TTTTACTCAAAGGT
* * * *
820227 ATTTAATCTTTCATCTAATTGGCATAATTGACACATTTCTATCAAATGCACAACTAGGCCATTAA
1 ATTTAACCTTTCATCTAACTGGCATAATTGACACATTTCTGTCAAATGCACAGCTAGGCCATTAA
* * *
820292 TCTTTTACTCAAA-G---------TTTCATCTAACTGGCATAATTGACACCTTTGTGTAAGATGC
66 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAAATG--ATCTTTCTGTAA-ATGC
820347 AAAACTAGGCCATTAATCTTTTACTCAAA-G---------TTTCATCTAACTGGCATAATTGACA
128 AAAACTAGGCCATTAATCTTTTACTCAAAGGTATTTAACCTTTCATCTAA-TGGCATAATTGACA
* * * **
820402 CCTTTGTGT-AAATGCA-AACTAGGCCATTAATCTTTTACTCAAAGGTATTTAATATTTCATCTA
192 --TTTCTGTCAAATGCACATCTAGGCCATTAATATTTTACTCAAAGGTATTTAACCTTTCATCTA
* * *
820465 ACTGGCATAATTGACACTTTTTTATCAAATGCACAGCTAGGCCATTAAGCTTTTACTCAAAGGTA
255 ACTGGCATAATTGACAC-TTTCTGTCAAATGCACAGCTAGGCCATTAATCTTTTACTCAAAGGTA
*
820530 TTTAACCTTTCATCTAACTTGCATAATTGAAAACTTTCTGTCAAATGCACAACTAGGTCATTAAT
319 TTTAACCTTTCATCTAACTTGCATAATTGAAAACTTTCTATCAAATGCACAACTAGG-CATTAAT
820595 CTTTTACTCAAAGGT
383 CTTTTACTCAAAGGT
* * * *
820610 ATTTAACCATTCATCTAACTGGCATAATTGATACATTTCTGTCAGATGCATAGCTAGGCCATTAA
1 ATTTAACCTTTCATCTAACTGGCATAATTGACACATTTCTGTCAAATGCACAGCTAGGCCATTAA
* *
820675 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCAT-AATGATCTTTCTGTCAATGCATA
66 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAAATGATCTTTCTGTAAATGCAAA
*
820739 GCTAGGCCATTAATCTTTTA-TCAAAGGTATTTAACCTTTCATCTAATGGCATAA-TGACATTT-
131 ACTAGGCCATTAATCTTTTACTCAAAGGTATTTAACCTTTCATCTAATGGCATAATTGACATTTC
* * *
820801 TCTCAAATGCACATCTAGACAATTAATATTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGC
196 TGTCAAATGCACATCTAGGCCATTAATATTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGC
* * * *
820866 ATAATTGACACATTTCTGTTAGATGCACAACTAGGCCATTAATCCTTTACTCAAAGGTATTTAAC
261 ATAATTGACAC-TTTCTGTCAAATGCACAGCTAGGCCATTAATCTTTTACTCAAAGGTATTTAAC
* * * *
820931 CTTTCATCTAAC-TGACATAGTTG-ACACTATTCTTTCAAATGCACAACTAGGCTATTAATATTT
325 CTTTCATCTAACTTG-CATAATTGAAAACT-TTCTATCAAATGCACAACTAGGC-ATTAATCTTT
820994 TACTCAAAGGT
387 TACTCAAAGGT
*
821005 ATTTAACCTTTCATCTAACTGGCATAATTGACACATTTCTGTCAAATGCACAGCTAAGCCATTAA
1 ATTTAACCTTTCATCTAACTGGCATAATTGACACATTTCTGTCAAATGCACAGCTAGGCCATTAA
* *
821070 TCTTTTACTCAAAGGTGTTTAACCTTTCATCTAACTGGAATAAATGATACTTTCTGTCAAAT
66 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAAATGAT-CTTTCTGT-AAAT
821132 ATACATCTAG
Statistics
Matches: 792, Mismatches: 78, Indels: 76
0.84 0.08 0.08
Matches are distributed among these distances:
382 1 0.00
383 245 0.31
384 18 0.02
385 16 0.02
388 5 0.01
389 26 0.03
390 9 0.01
392 3 0.00
393 23 0.03
394 74 0.09
395 264 0.33
396 12 0.02
397 16 0.02
398 13 0.02
403 1 0.00
404 66 0.08
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (397 bp):
ATTTAACCTTTCATCTAACTGGCATAATTGACACATTTCTGTCAAATGCACAGCTAGGCCATTAA
TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAAATGATCTTTCTGTAAATGCAAA
ACTAGGCCATTAATCTTTTACTCAAAGGTATTTAACCTTTCATCTAATGGCATAATTGACATTTC
TGTCAAATGCACATCTAGGCCATTAATATTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGC
ATAATTGACACTTTCTGTCAAATGCACAGCTAGGCCATTAATCTTTTACTCAAAGGTATTTAACC
TTTCATCTAACTTGCATAATTGAAAACTTTCTATCAAATGCACAACTAGGCATTAATCTTTTACT
CAAAGGT
Found at i:824563 original size:2 final size:2
Alignment explanation
Indices: 824556--824587 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
824546 ATTAGCCATA
824556 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
824588 TGACATCATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:827374 original size:81 final size:81
Alignment explanation
Indices: 826497--827359 Score: 1166
Period size: 81 Copynumber: 10.7 Consensus size: 81
826487 CATCTAGAGA
* * * * * * * *
826497 ATTTAACCTTTCATCTAACTGACATGATTG--ACATTTCAGCCAAATGCACAACTA-GACTTTAG
1 ATTTAACCTTTCATCTAACTGGCATAATTGACACATTTCTGTCAAATGCACAGCTAGGCCATTAA
* *
826559 TATTTTACTCAAAGGC
66 TCTTTTACTCAAAGGT
* * *
826575 ATTTAACCTTTCATCTAACTGGCATAGTTGACACCTTTCTGTTAAATGCACAGCTAGGCCATTAA
1 ATTTAACCTTTCATCTAACTGGCATAATTGACACATTTCTGTCAAATGCACAGCTAGGCCATTAA
826640 TCTTTTACTCAAAGGT
66 TCTTTTACTCAAAGGT
* * * * * *
826656 GTTTAACATTTCACCTAACTAGCAAAATTGACATC-TTTCTGTCAAATGCATAGCTAGGCCATTA
1 ATTTAACCTTTCATCTAACTGGCATAATTGACA-CATTTCTGTCAAATGCACAGCTAGGCCATTA
826720 ATCTTTTACTCAAAGGT
65 ATCTTTTACTCAAAGGT
* * * **
826737 ATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTATTTCAGGTGCACAGCTAGGCCATTAA
1 ATTTAACCTTTCATCTAACTGGCATAATTGACACATTTCTGTCAAATGCACAGCTAGGCCATTAA
826802 TCTTTTACTCAAAGGT
66 TCTTTTACTCAAAGGT
* * * *
826818 ATTTAACCTTTCATCTAACTGGCATAA-T-ACACCTTTCTGTCACATGCACAACTAGGCAATTAA
1 ATTTAACCTTTCATCTAACTGGCATAATTGACACATTTCTGTCAAATGCACAGCTAGGCCATTAA
826881 TCTTTTACTCAAAGGT
66 TCTTTTACTCAAAGGT
* * * *
826897 ATTTAACCTTTCATCTAACTGGCATAATTGACATATTTTTGTCAAATGCACAGATAGGCTATTAA
1 ATTTAACCTTTCATCTAACTGGCATAATTGACACATTTCTGTCAAATGCACAGCTAGGCCATTAA
*
826962 TCTTTTACTCAAAGGC
66 TCTTTTACTCAAAGGT
* * *
826978 ATTTAACCTTTCATCTAACTGGCATAATTGAGACAGTTATGTCAAATGCACAGCTAGGCCATTAA
1 ATTTAACCTTTCATCTAACTGGCATAATTGACACATTTCTGTCAAATGCACAGCTAGGCCATTAA
827043 T-TTTTACTCAAAGGT
66 TCTTTTACTCAAAGGT
* ** * *
827058 ATTTAACCTTTCATCTAACTGGCATAATTGACACTTTTCTGTCAGGTGCACTGCTAGGCCAATAA
1 ATTTAACCTTTCATCTAACTGGCATAATTGACACATTTCTGTCAAATGCACAGCTAGGCCATTAA
* *
827123 TCTTTTACTGAAAGGA
66 TCTTTTACTCAAAGGT
* * * * * *
827139 ATTTAACCTTTCATCTAATTGGTATAGTTGACACATTTCTATCAAATGTACAACTAGGCCATTAA
1 ATTTAACCTTTCATCTAACTGGCATAATTGACACATTTCTGTCAAATGCACAGCTAGGCCATTAA
*
827204 TCTTTTACTTAAAGGT
66 TCTTTTACTCAAAGGT
* *
827220 ATTTAACCTTTCATCTAACTGGCATTATTGACATC-TTTCTGTCAAATGCACAGCTAAGCCATTA
1 ATTTAACCTTTCATCTAACTGGCATAATTGACA-CATTTCTGTCAAATGCACAGCTAGGCCATTA
827284 ATCTTTTACTCAAAGGT
65 ATCTTTTACTCAAAGGT
* *
827301 ATTTAACCTTTCATCTAACTGGCATAATTAACACATTTCTGTCAAATGCATAGCTAGGC
1 ATTTAACCTTTCATCTAACTGGCATAATTGACACATTTCTGTCAAATGCACAGCTAGGC
827360 TTTTAGTATT
Statistics
Matches: 687, Mismatches: 88, Indels: 17
0.87 0.11 0.02
Matches are distributed among these distances:
78 27 0.04
79 72 0.10
80 94 0.14
81 492 0.72
82 2 0.00
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.35
Consensus pattern (81 bp):
ATTTAACCTTTCATCTAACTGGCATAATTGACACATTTCTGTCAAATGCACAGCTAGGCCATTAA
TCTTTTACTCAAAGGT
Found at i:828067 original size:39 final size:39
Alignment explanation
Indices: 828017--828094 Score: 129
Period size: 39 Copynumber: 2.0 Consensus size: 39
828007 TATCGATACC
* * *
828017 CCATCAGTATCGATACTTATTGCACGAGTATTGATATTG
1 CCATCAGTATCGATACTCATTGCACCAGTACTGATATTG
828056 CCATCAGTATCGATACTCATTGCACCAGTACTGATATTG
1 CCATCAGTATCGATACTCATTGCACCAGTACTGATATTG
828095 TTCATTGCAT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.33
Consensus pattern (39 bp):
CCATCAGTATCGATACTCATTGCACCAGTACTGATATTG
Found at i:828085 original size:21 final size:20
Alignment explanation
Indices: 828021--828085 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 20
828011 GATACCCCAT
828021 CAGTATCGATACTTATTGCAC
1 CAGTATCGATAC-TATTGCAC
* * *
828042 GAGTATTG--A-TATTGCCAT
1 CAGTATCGATACTATTG-CAC
828060 CAGTATCGATACTCATTGCAC
1 CAGTATCGATACT-ATTGCAC
828081 CAGTA
1 CAGTA
828086 CTGATATTGT
Statistics
Matches: 33, Mismatches: 6, Indels: 10
0.67 0.12 0.20
Matches are distributed among these distances:
17 5 0.15
18 8 0.24
19 1 0.03
20 1 0.03
21 14 0.42
22 4 0.12
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.32
Consensus pattern (20 bp):
CAGTATCGATACTATTGCAC
Found at i:828645 original size:11 final size:12
Alignment explanation
Indices: 828629--828658 Score: 53
Period size: 11 Copynumber: 2.6 Consensus size: 12
828619 GAGAAAGAAG
828629 AAGAAGAAGG-A
1 AAGAAGAAGGAA
828640 AAGAAGAAGGAA
1 AAGAAGAAGGAA
828652 AAGAAGA
1 AAGAAGA
828659 GATAATTTAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 10 0.56
12 8 0.44
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (12 bp):
AAGAAGAAGGAA
Found at i:832270 original size:100 final size:101
Alignment explanation
Indices: 832097--832298 Score: 343
Period size: 100 Copynumber: 2.0 Consensus size: 101
832087 TCAACTCTCT
*
832097 TTTTTTAAGCATACTTTAAGGGGAGTCAACTCATCACACTACTATCCCACACTCTAAGTGAAAGG
1 TTTTTTAAGCATACTTTAAGGGGAGTCAACTCATCACACTACCATCCCACACTCTAAGTGAAAGG
*
832162 GAGCATACCTTCCA-CCCCGATCTAGTCAAGTAGAG
66 GAGCATACCTTCCACCCCCGAGCTAGTCAAGTAGAG
* * *
832197 TTTTTTAATCATACTTTGAGGGGAGTCAGCTCATCACACTACCATCCCACACTCTAAGTGAAAGG
1 TTTTTTAAGCATACTTTAAGGGGAGTCAACTCATCACACTACCATCCCACACTCTAAGTGAAAGG
*
832262 GAGCATACCTTCCACCCCCGAGCTAGTCAGGTAGAG
66 GAGCATACCTTCCACCCCCGAGCTAGTCAAGTAGAG
832298 T
1 T
832299 CATCCCGTGA
Statistics
Matches: 95, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
100 75 0.79
101 20 0.21
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (101 bp):
TTTTTTAAGCATACTTTAAGGGGAGTCAACTCATCACACTACCATCCCACACTCTAAGTGAAAGG
GAGCATACCTTCCACCCCCGAGCTAGTCAAGTAGAG
Found at i:833049 original size:16 final size:17
Alignment explanation
Indices: 833028--833060 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
833018 ATAAAGAAAT
833028 AAAGAAA-AGAAAAAAA
1 AAAGAAACAGAAAAAAA
833044 AAAGAAACAGAAAAAAA
1 AAAGAAACAGAAAAAAA
833061 TAAGTTTTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.85, C:0.03, G:0.12, T:0.00
Consensus pattern (17 bp):
AAAGAAACAGAAAAAAA
Found at i:835634 original size:11 final size:11
Alignment explanation
Indices: 835620--835647 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
835610 TCAAAAAAAT
835620 AAAAAAAACAA
1 AAAAAAAACAA
835631 AAAAAAAACAA
1 AAAAAAAACAA
835642 AAAAAA
1 AAAAAA
835648 GCCAAAATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.93, C:0.07, G:0.00, T:0.00
Consensus pattern (11 bp):
AAAAAAAACAA
Found at i:842833 original size:18 final size:19
Alignment explanation
Indices: 842788--842834 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
842778 CCCTTATTGG
*
842788 GAGTATCGATACTCTACCCTT
1 GAGTACCGATACTCTA--CTT
842809 G-GTACCGATACTCTA-TT
1 GAGTACCGATACTCTACTT
842826 GAGTACCGA
1 GAGTACCGA
842835 CACCAAAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
17 3 0.12
18 7 0.29
20 13 0.54
21 1 0.04
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.30
Consensus pattern (19 bp):
GAGTACCGATACTCTACTT
Found at i:852310 original size:23 final size:24
Alignment explanation
Indices: 852284--852379 Score: 81
Period size: 23 Copynumber: 3.9 Consensus size: 24
852274 ATGCCATAAT
852284 AAATATA-ATATATATATTTTCAA
1 AAATATATATATATATATTTTCAA
* * *
852307 AAATA-ATACATTTATATTTTAAA
1 AAATATATATATATATATTTTCAA
852330 ACATATATATACTATATACATATTTTC-A
1 A-A-ATATATA-TATAT--ATATTTTCAA
*
852358 AAATATATGTATAATATATTTT
1 AAATATATATAT-ATATATTTT
852380 AAAGTAATGC
Statistics
Matches: 58, Mismatches: 7, Indels: 15
0.73 0.09 0.19
Matches are distributed among these distances:
22 1 0.02
23 19 0.33
24 8 0.14
25 6 0.10
26 11 0.19
27 4 0.07
28 2 0.03
29 7 0.12
ACGTcount: A:0.48, C:0.06, G:0.01, T:0.45
Consensus pattern (24 bp):
AAATATATATATATATATTTTCAA
Found at i:852374 original size:28 final size:28
Alignment explanation
Indices: 852320--852375 Score: 69
Period size: 30 Copynumber: 2.0 Consensus size: 28
852310 TAATACATTT
852320 ATATTTTAAAACATATATATACTATATAC
1 ATATTTTAAAACATATATATAC-ATATAC
* *
852349 ATATTTTCAAAATATATGTATA-ATATA
1 ATATTTT-AAAACATATATATACATATA
852376 TTTTAAAGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 5 0.21
29 7 0.29
30 12 0.50
ACGTcount: A:0.48, C:0.07, G:0.02, T:0.43
Consensus pattern (28 bp):
ATATTTTAAAACATATATATACATATAC
Found at i:852411 original size:14 final size:14
Alignment explanation
Indices: 852389--852422 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
852379 TAAAGTAATG
852389 CATACACTACTATA
1 CATACACTACTATA
*
852403 CATATACTACTATA
1 CATACACTACTATA
*
852417 TATACA
1 CATACA
852423 TAATACTCGA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.44, C:0.24, G:0.00, T:0.32
Consensus pattern (14 bp):
CATACACTACTATA
Found at i:853208 original size:17 final size:17
Alignment explanation
Indices: 853182--853222 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
853172 CGCTTCAACG
853182 CTTT-TCTTC-TACTCT
1 CTTTCTCTTCTTACTCT
*
853197 CTTTGCTCTTCTTCCTCT
1 CTTT-CTCTTCTTACTCT
853215 CTTTCTCT
1 CTTTCTCT
853223 CATGGTAATC
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
15 4 0.18
17 9 0.41
18 9 0.41
ACGTcount: A:0.02, C:0.37, G:0.02, T:0.59
Consensus pattern (17 bp):
CTTTCTCTTCTTACTCT
Found at i:858094 original size:186 final size:185
Alignment explanation
Indices: 857775--858165 Score: 694
Period size: 186 Copynumber: 2.1 Consensus size: 185
857765 ATAAAATTTT
* * *
857775 AAATTTTAAATATATTATATATAACATATGGGCTCAGCCCAAACCATTTAAAATCCAATTAATAA
1 AAATATTAAATATATTATATATAACATATGGACTCAGCCCAAACCATTTAAAACCCAATTAATAA
857840 TTTAAGATCCAATAACTTTTAAACCTAAATCAATATTAATTAATTAAAAAATTTATATAAAATTT
66 TTTAAGATCCAATAACTTTTAAACCTAAATCAATATTAATTAATTAAAAAATTTATATAAAATTT
*
857905 TTATTTTATAATTATATATTATTTAAATTAATTGTAAACTATTTTTTTGAATTAAA
131 TTATTTTATAATTATATATTATTTAAATTAATTATAAACTA-TTTTTTGAATTAAA
857961 AAATATTAAATATATTATATATAACATATGGACTCAGCCCAAACCATTTAAAACCCAATTAATAA
1 AAATATTAAATATATTATATATAACATATGGACTCAGCCCAAACCATTTAAAACCCAATTAATAA
*
858026 TTTAAGATTCAATAACTTTTAAACCTAAATCAATATTAATTAATTAAAAAATTTATATAAAATTT
66 TTTAAGATCCAATAACTTTTAAACCTAAATCAATATTAATTAATTAAAAAATTTATATAAAATTT
*
858091 TTATTTTATAATTATATATTATTTAAATTAATTATAAACTATTTTTTGAATTATA
131 TTATTTTATAATTATATATTATTTAAATTAATTATAAACTATTTTTTGAATTAAA
* *
858146 AAATATTTAAT-TTTTATATA
1 AAATATTAAATATATTATATA
858166 AATTAGAAAA
Statistics
Matches: 197, Mismatches: 8, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
184 8 0.04
185 23 0.12
186 166 0.84
ACGTcount: A:0.46, C:0.09, G:0.03, T:0.42
Consensus pattern (185 bp):
AAATATTAAATATATTATATATAACATATGGACTCAGCCCAAACCATTTAAAACCCAATTAATAA
TTTAAGATCCAATAACTTTTAAACCTAAATCAATATTAATTAATTAAAAAATTTATATAAAATTT
TTATTTTATAATTATATATTATTTAAATTAATTATAAACTATTTTTTGAATTAAA
Found at i:858133 original size:20 final size:20
Alignment explanation
Indices: 858099--858155 Score: 55
Period size: 19 Copynumber: 2.9 Consensus size: 20
858089 TTTTATTTTA
* *
858099 TAATTATATATTATTTAAAT
1 TAATTATAAAATATTTAAAT
* *
858119 TAATTATAAACTATTT--TT
1 TAATTATAAAATATTTAAAT
858137 TGAATTATAAAATATTTAA
1 T-AATTATAAAATATTTAA
858156 TTTTTATATA
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
18 2 0.07
19 14 0.47
20 14 0.47
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.51
Consensus pattern (20 bp):
TAATTATAAAATATTTAAAT
Found at i:859221 original size:7 final size:7
Alignment explanation
Indices: 859209--859270 Score: 115
Period size: 7 Copynumber: 8.9 Consensus size: 7
859199 CCCACTATAG
859209 TCTTCAC
1 TCTTCAC
859216 TCTTCAC
1 TCTTCAC
859223 TCTTCAC
1 TCTTCAC
859230 TCTTCAC
1 TCTTCAC
859237 TCTTCAC
1 TCTTCAC
859244 TCTTCAC
1 TCTTCAC
*
859251 CCTTCAC
1 TCTTCAC
859258 TCTTCAC
1 TCTTCAC
859265 TCTTCA
1 TCTTCA
859271 ATTACCCTCA
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 53 1.00
ACGTcount: A:0.15, C:0.44, G:0.00, T:0.42
Consensus pattern (7 bp):
TCTTCAC
Found at i:859708 original size:13 final size:13
Alignment explanation
Indices: 859690--859714 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
859680 TTTTATATTA
859690 AATGGTTTTATGT
1 AATGGTTTTATGT
859703 AATGGTTTTATG
1 AATGGTTTTATG
859715 GACTCACTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.52
Consensus pattern (13 bp):
AATGGTTTTATGT
Found at i:859934 original size:14 final size:15
Alignment explanation
Indices: 859910--859987 Score: 50
Period size: 16 Copynumber: 4.9 Consensus size: 15
859900 GCACACACGT
859910 ATAATATATATACAC
1 ATAATATATATACAC
*
859925 ATAAATATATACATGCATC
1 AT-AATATAT--ATACA-C
* *
859944 ATAAATATGTATATAC
1 AT-AATATATATACAC
**
859960 ATACATATATATACTT
1 ATA-ATATATATACAC
859976 AT-ATATATATAC
1 ATAATATATATAC
859988 TTATACTATA
Statistics
Matches: 50, Mismatches: 8, Indels: 11
0.72 0.12 0.16
Matches are distributed among these distances:
14 10 0.20
15 3 0.06
16 20 0.40
17 3 0.06
18 4 0.08
19 10 0.20
ACGTcount: A:0.49, C:0.12, G:0.03, T:0.37
Consensus pattern (15 bp):
ATAATATATATACAC
Found at i:860043 original size:21 final size:21
Alignment explanation
Indices: 860017--860115 Score: 59
Period size: 19 Copynumber: 4.9 Consensus size: 21
860007 AGTTATATTA
860017 TATATATGTATATACTTATGT
1 TATATATGTATATACTTATGT
* *
860038 TATATAAT-T-TATA-TAATGA
1 TATAT-ATGTATATACTTATGT
* *
860057 TATATAT-TATATACATA-GC
1 TATATATGTATATACTTATGT
* *
860076 TATATAAGTATA-A-TGTATACT
1 TATATATGTATATACT-TAT-GT
*
860097 TATATAAGTATATACTTAT
1 TATATATGTATATACTTAT
860116 ACTATATGCA
Statistics
Matches: 60, Mismatches: 9, Indels: 17
0.70 0.10 0.20
Matches are distributed among these distances:
18 3 0.05
19 23 0.38
20 9 0.15
21 18 0.30
22 6 0.10
23 1 0.02
ACGTcount: A:0.41, C:0.05, G:0.07, T:0.46
Consensus pattern (21 bp):
TATATATGTATATACTTATGT
Found at i:860121 original size:21 final size:21
Alignment explanation
Indices: 859969--860122 Score: 87
Period size: 21 Copynumber: 7.5 Consensus size: 21
859959 CATACATATA
859969 TATACT-TATATA-TATATACT
1 TATACTATATA-AGTATATACT
* *
859989 TATACTATAT-AGTTACATAGT
1 TATACTATATAAG-TATATACT
*
860010 TATATTATATATATGTATATACT
1 TATACTATATA-A-GTATATACT
** *
860033 TATGTTATATAA-TTTATA-T
1 TATACTATATAAGTATATACT
* *
860052 AATGA-TATAT-ATTATATAC-
1 TAT-ACTATATAAGTATATACT
860071 -ATAGCTATATAAGTATA-A-T
1 TATA-CTATATAAGTATATACT
860090 GTATACTTATATAAGTATATACT
1 -TATAC-TATATAAGTATATACT
860113 TATACTATAT
1 TATACTATAT
860123 GCATAAGTAT
Statistics
Matches: 105, Mismatches: 11, Indels: 35
0.70 0.07 0.23
Matches are distributed among these distances:
17 1 0.01
18 3 0.03
19 20 0.19
20 17 0.16
21 38 0.36
22 7 0.07
23 18 0.17
24 1 0.01
ACGTcount: A:0.41, C:0.06, G:0.06, T:0.47
Consensus pattern (21 bp):
TATACTATATAAGTATATACT
Found at i:860199 original size:2 final size:2
Alignment explanation
Indices: 860192--860226 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
860182 TAACAATCAT
*
860192 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TT TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
860227 TGTAATTGAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (2 bp):
TA
Found at i:860872 original size:40 final size:40
Alignment explanation
Indices: 860839--860918 Score: 135
Period size: 40 Copynumber: 2.0 Consensus size: 40
860829 CAATTTGTAT
860839 CCAGTAAGATTCAAGC-TAAATTTTTTATGTCAATGATGTG
1 CCAGTAAGATTCAA-CTTAAATTTTTTATGTCAATGATGTG
*
860879 CCAGTAAGATTCGACTTAAATTTTTTATGTCAATGATGTG
1 CCAGTAAGATTCAACTTAAATTTTTTATGTCAATGATGTG
860919 ACTCGATCTG
Statistics
Matches: 38, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
39 1 0.03
40 37 0.97
ACGTcount: A:0.31, C:0.12, G:0.17, T:0.39
Consensus pattern (40 bp):
CCAGTAAGATTCAACTTAAATTTTTTATGTCAATGATGTG
Found at i:862445 original size:13 final size:14
Alignment explanation
Indices: 862424--862450 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
862414 ATGTTGTACA
862424 TTTCTTTTTTTTTT
1 TTTCTTTTTTTTTT
862438 TTTCTTTTTTTTT
1 TTTCTTTTTTTTT
862451 GTCATTATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.00, C:0.07, G:0.00, T:0.93
Consensus pattern (14 bp):
TTTCTTTTTTTTTT
Found at i:864120 original size:23 final size:23
Alignment explanation
Indices: 864086--864187 Score: 84
Period size: 23 Copynumber: 4.4 Consensus size: 23
864076 AGAATATGCA
864086 CCGAAGTG-CCACATAGAAATGTC
1 CCGAAG-GACCACATAGAAATGTC
* *
864109 CTGAAGGACCACATA-ATATTGTC
1 CCGAAGGACCACATAGA-AATGTC
* * *
864132 CCGAAGGATCGCGTAGAAATGTC
1 CCGAAGGACCACATAGAAATGTC
* *
864155 CCGAAGGA-CAGCGTAGATATGTC
1 CCGAAGGACCA-CATAGAAATGTC
*
864178 CCAAAGGACC
1 CCGAAGGACC
864188 GCGTAGAACC
Statistics
Matches: 64, Mismatches: 10, Indels: 9
0.77 0.12 0.11
Matches are distributed among these distances:
22 3 0.05
23 59 0.92
24 2 0.03
ACGTcount: A:0.33, C:0.25, G:0.25, T:0.18
Consensus pattern (23 bp):
CCGAAGGACCACATAGAAATGTC
Found at i:864149 original size:46 final size:46
Alignment explanation
Indices: 864099--864195 Score: 126
Period size: 46 Copynumber: 2.1 Consensus size: 46
864089 AAGTGCCACA
* * *
864099 TAGAAATGTCCTGAAGGACCA-CATA-ATATTGTCCCGAAGGATCGCG
1 TAGAAATGTCCCGAAGGA-CAGCATAGATA-TGTCCCAAAGGACCGCG
*
864145 TAGAAATGTCCCGAAGGACAGCGTAGATATGTCCCAAAGGACCGCG
1 TAGAAATGTCCCGAAGGACAGCATAGATATGTCCCAAAGGACCGCG
864191 TAGAA
1 TAGAA
864196 CCCTCGACTC
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
45 2 0.04
46 40 0.89
47 3 0.07
ACGTcount: A:0.34, C:0.22, G:0.26, T:0.19
Consensus pattern (46 bp):
TAGAAATGTCCCGAAGGACAGCATAGATATGTCCCAAAGGACCGCG
Found at i:864191 original size:23 final size:23
Alignment explanation
Indices: 864099--864195 Score: 106
Period size: 23 Copynumber: 4.2 Consensus size: 23
864089 AAGTGCCACA
* * *
864099 TAGAAATGTCCTGAAGGACCACA
1 TAGAAATGTCCCGAAGGACCGCG
* *
864122 TA-ATATTGTCCCGAAGGATCGCG
1 TAGA-AATGTCCCGAAGGACCGCG
*
864145 TAGAAATGTCCCGAAGGACAGCG
1 TAGAAATGTCCCGAAGGACCGCG
* *
864168 TAGATATGTCCCAAAGGACCGCG
1 TAGAAATGTCCCGAAGGACCGCG
864191 TAGAA
1 TAGAA
864196 CCCTCGACTC
Statistics
Matches: 60, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
22 1 0.02
23 58 0.97
24 1 0.02
ACGTcount: A:0.34, C:0.22, G:0.26, T:0.19
Consensus pattern (23 bp):
TAGAAATGTCCCGAAGGACCGCG
Found at i:864305 original size:16 final size:15
Alignment explanation
Indices: 864283--864322 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 15
864273 ACATAGCTTG
864283 TATCACATAGA-CAT
1 TATCACATAGATCAT
864297 ATAATCACATAGATCAT
1 -T-ATCACATAGATCAT
864314 TATCACATA
1 TATCACATA
864323 ACTTATATCA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 9 0.39
16 11 0.48
17 3 0.13
ACGTcount: A:0.45, C:0.20, G:0.05, T:0.30
Consensus pattern (15 bp):
TATCACATAGATCAT
Found at i:864320 original size:15 final size:15
Alignment explanation
Indices: 864264--864332 Score: 63
Period size: 14 Copynumber: 4.7 Consensus size: 15
864254 TTTACCATTT
*
864264 ACATATTTCACATAG
1 ACATATATCACATAG
* *
864279 -CTTGTATCACATAG
1 ACATATATCACATAG
864293 ACATATAATCACATAG
1 ACATAT-ATCACATAG
864309 ATCAT-TATCACATA-
1 A-CATATATCACATAG
*
864323 ACTTATATCA
1 ACATATATCA
864333 ACTTTTCATG
Statistics
Matches: 44, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
13 2 0.05
14 17 0.39
15 11 0.25
16 11 0.25
17 3 0.07
ACGTcount: A:0.41, C:0.20, G:0.06, T:0.33
Consensus pattern (15 bp):
ACATATATCACATAG
Found at i:871301 original size:23 final size:23
Alignment explanation
Indices: 871156--871304 Score: 147
Period size: 23 Copynumber: 6.4 Consensus size: 23
871146 CATCGAAGTG
*
871156 CCACGTAGAATATG-CACCGAAGTA
1 CCACGTAGAA-ATGTC-CCGAAGGA
* *
871180 CAACATAGAAATGTCCCGAAGGA
1 CCACGTAGAAATGTCCCGAAGGA
* * *
871203 CCACATAGAAATGTTCCGAATGA
1 CCACGTAGAAATGTCCCGAAGGA
* *
871226 CCACATAGAAATGTCCCGAAAGA
1 CCACGTAGAAATGTCCCGAAGGA
* *
871249 CCGCGTAGAAATGTCCCAAAGGA
1 CCACGTAGAAATGTCCCGAAGGA
** *
871272 CCACGTAGATTTGTTCCGAAGGA
1 CCACGTAGAAATGTCCCGAAGGA
*
871295 CCGCGTAGAA
1 CCACGTAGAA
871305 CCCTCGTCTC
Statistics
Matches: 105, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
23 96 0.91
24 9 0.09
ACGTcount: A:0.37, C:0.24, G:0.22, T:0.17
Consensus pattern (23 bp):
CCACGTAGAAATGTCCCGAAGGA
Found at i:872032 original size:20 final size:20
Alignment explanation
Indices: 872007--872054 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
871997 ATCGATATCC
* *
872007 TTGGTATCGATGGTACTCGT
1 TTGGTATCGATGATACTCCT
872027 TTGGTATCGATGATACTCCT
1 TTGGTATCGATGATACTCCT
*
872047 TCGGTATC
1 TTGGTATC
872055 AATACTGATT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.17, C:0.19, G:0.25, T:0.40
Consensus pattern (20 bp):
TTGGTATCGATGATACTCCT
Found at i:885527 original size:24 final size:24
Alignment explanation
Indices: 885482--885531 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
885472 ATAAAGAACC
*
885482 AAAATAAAATTAAATATACCATTA
1 AAAATAAAATTAAACATACCATTA
*
885506 AAAATAAAGTTTAAACAT-CCATTA
1 AAAATAAA-ATTAAACATACCATTA
885530 AA
1 AA
885532 CCAACCACCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 16 0.70
25 7 0.30
ACGTcount: A:0.60, C:0.10, G:0.02, T:0.28
Consensus pattern (24 bp):
AAAATAAAATTAAACATACCATTA
Found at i:888542 original size:46 final size:45
Alignment explanation
Indices: 888444--888582 Score: 172
Period size: 46 Copynumber: 3.0 Consensus size: 45
888434 TTATTCATTA
*
888444 ATTTCATTTATGACATCATTTCATGCCTTTAATGCATCATTTCAA-GC
1 ATTTCATTTATGACATCA-TTCATGCC-TTAATGCATCCTTT-AATGC
* *
888491 CTTTCATTTATGTCATACATTCATGCCTTAATGCATCCTTTAATGC
1 ATTTCATTTATGACAT-CATTCATGCCTTAATGCATCCTTTAATGC
* * *
888537 ATTTCATTTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGC
1 ATTTCATTTATGACAT-CATTCATGCCTTAATGCATCCTTTAATGC
888583 CTTAATGCAT
Statistics
Matches: 82, Mismatches: 8, Indels: 5
0.86 0.08 0.05
Matches are distributed among these distances:
45 2 0.02
46 56 0.68
47 22 0.27
48 2 0.02
ACGTcount: A:0.24, C:0.24, G:0.09, T:0.43
Consensus pattern (45 bp):
ATTTCATTTATGACATCATTCATGCCTTAATGCATCCTTTAATGC
Found at i:888593 original size:66 final size:66
Alignment explanation
Indices: 888510--888648 Score: 233
Period size: 66 Copynumber: 2.1 Consensus size: 66
888500 ATGTCATACA
* ** *
888510 TTCATGCCTTAATGCATCCTTTAATGCATTTCATTTATGGCATCCTTTCATGCCTTAATGCATCC
1 TTCATGCCTTAATGCATCCTTTAATACATTTCATTTATAACATCCTTTCATGCCTTAATACATCC
888575 T
66 T
*
888576 TTCATGCCTTAATGCATCCTTTCATACATTTCATTTATAACATCCTTTCATGCCTTAATACATCC
1 TTCATGCCTTAATGCATCCTTTAATACATTTCATTTATAACATCCTTTCATGCCTTAATACATCC
888641 T
66 T
888642 TTCATGC
1 TTCATGC
888649 ATTTCATTTA
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
66 68 1.00
ACGTcount: A:0.23, C:0.27, G:0.08, T:0.42
Consensus pattern (66 bp):
TTCATGCCTTAATGCATCCTTTAATACATTTCATTTATAACATCCTTTCATGCCTTAATACATCC
T
Found at i:888599 original size:112 final size:113
Alignment explanation
Indices: 888457--888694 Score: 354
Period size: 112 Copynumber: 2.1 Consensus size: 113
888447 TCATTTATGA
* * **
888457 CATCATTTCATGCCTTTAATGCATCATTTCA-AGCCTTTCATTTATGTCATACATTCATGCCTTA
1 CATCCTTTCATGCCTTTAATGCATCATTTCATA-CATTTCATTTATAACATACATTCATGCCTTA
* * *
888521 ATGCATCCTTTAATGCATTTCATTTATGGCATCCTTTCATGCCTTAATG
65 ATACATCCTTTAATGCATTTCATTTATGACATCATTTCATGCCTTAATG
* * *
888570 CATCCTTTCATGCC-TTAATGCATCCTTTCATACATTTCATTTATAACATCCTTTCATGCCTTAA
1 CATCCTTTCATGCCTTTAATGCATCATTTCATACATTTCATTTATAACATACATTCATGCCTTAA
*
888634 TACATCCTTTCATGCATTTCATTTATGACATCATTTCATGCCTTAATG
66 TACATCCTTTAATGCATTTCATTTATGACATCATTTCATGCCTTAATG
888682 CATCCTTTCATGC
1 CATCCTTTCATGC
888695 ATTTCATTTA
Statistics
Matches: 113, Mismatches: 11, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
112 99 0.88
113 14 0.12
ACGTcount: A:0.24, C:0.26, G:0.08, T:0.42
Consensus pattern (113 bp):
CATCCTTTCATGCCTTTAATGCATCATTTCATACATTTCATTTATAACATACATTCATGCCTTAA
TACATCCTTTAATGCATTTCATTTATGACATCATTTCATGCCTTAATG
Found at i:888621 original size:26 final size:25
Alignment explanation
Indices: 888590--888705 Score: 99
Period size: 20 Copynumber: 5.0 Consensus size: 25
888580 TGCCTTAATG
*
888590 CATCCTTTCATACATTTCATTTATAA
1 CATCCTTTCATGCATTTCATTTAT-A
*
888616 CATCCTTTCATGC----C-TTAATA
1 CATCCTTTCATGCATTTCATTTATA
888636 CATCCTTTCATGCATTTCATTTATGA
1 CATCCTTTCATGCATTTCATTTAT-A
* * *
888662 CATCATTTCATGC----C-TTAATG
1 CATCCTTTCATGCATTTCATTTATA
888682 CATCCTTTCATGCATTTCATTTAT
1 CATCCTTTCATGCATTTCATTTAT
888706 GGATTCGTTT
Statistics
Matches: 71, Mismatches: 8, Indels: 23
0.70 0.08 0.23
Matches are distributed among these distances:
20 26 0.37
21 8 0.11
22 2 0.03
24 2 0.03
25 8 0.11
26 25 0.35
ACGTcount: A:0.25, C:0.25, G:0.05, T:0.45
Consensus pattern (25 bp):
CATCCTTTCATGCATTTCATTTATA
Found at i:888706 original size:46 final size:46
Alignment explanation
Indices: 888570--888706 Score: 238
Period size: 46 Copynumber: 3.0 Consensus size: 46
888560 TGCCTTAATG
* *
888570 CATCCTTTCATGCCTTAATGCATCCTTTCATACATTTCATTTATAA
1 CATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTCATTTATGA
*
888616 CATCCTTTCATGCCTTAATACATCCTTTCATGCATTTCATTTATGA
1 CATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTCATTTATGA
*
888662 CATCATTTCATGCCTTAATGCATCCTTTCATGCATTTCATTTATG
1 CATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTCATTTATG
888707 GATTCGTTTT
Statistics
Matches: 86, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 86 1.00
ACGTcount: A:0.24, C:0.26, G:0.07, T:0.44
Consensus pattern (46 bp):
CATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTCATTTATGA
Found at i:889341 original size:14 final size:14
Alignment explanation
Indices: 889322--889358 Score: 74
Period size: 14 Copynumber: 2.6 Consensus size: 14
889312 ACACCTATAG
889322 TATCAGTACTGTTC
1 TATCAGTACTGTTC
889336 TATCAGTACTGTTC
1 TATCAGTACTGTTC
889350 TATCAGTAC
1 TATCAGTAC
889359 CGATACCATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.24, C:0.22, G:0.14, T:0.41
Consensus pattern (14 bp):
TATCAGTACTGTTC
Found at i:889682 original size:27 final size:28
Alignment explanation
Indices: 889634--889691 Score: 77
Period size: 27 Copynumber: 2.1 Consensus size: 28
889624 ACCTCAATAA
889634 AAAAACTCATATATCAACATCTCAT-TC
1 AAAAACTCATATATCAACATCTCATATC
889661 AAAAACTCATAT-TCTTAA-ATCTCATATC
1 AAAAACTCATATATC--AACATCTCATATC
889689 AAA
1 AAA
889692 CATCCACCAC
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
26 2 0.07
27 19 0.68
28 7 0.25
ACGTcount: A:0.47, C:0.22, G:0.00, T:0.31
Consensus pattern (28 bp):
AAAAACTCATATATCAACATCTCATATC
Found at i:895443 original size:20 final size:20
Alignment explanation
Indices: 895408--895594 Score: 97
Period size: 20 Copynumber: 8.4 Consensus size: 20
895398 TTATGTATCC
*
895408 TTTCATGTCTTTAATGCATCA
1 TTTCATG-CCTTAATGCATCA
895429 TTTCATGCCTTAATGCATCA
1 TTTCATGCCTTAATGCATCA
* * *
895449 TTTCATGCATTTCATTTATAGTATCC
1 TTTCATGC----C-TTAAT-GCATCA
895475 TTTCAT-CCTTTAATGCATCA
1 TTTCATGCC-TTAATGCATCA
* * *
895495 TTTCACGCATTTCATTTATGGCATCC
1 TTTCATGC----C-TTAAT-GCATCA
*
895521 TTTCATGACTTAATGCATCA
1 TTTCATGCCTTAATGCATCA
**
895541 TTTCATGGATTTAATTTATGGCATCA
1 TTTCAT-GCCTT-A---AT-GCATCA
895567 TTTCATGCCTTAATGCATCA
1 TTTCATGCCTTAATGCATCA
895587 TTTCATGC
1 TTTCATGC
895595 ATTTCATTTA
Statistics
Matches: 129, Mismatches: 19, Indels: 37
0.70 0.10 0.20
Matches are distributed among these distances:
20 54 0.42
21 23 0.18
22 2 0.02
24 2 0.02
25 15 0.12
26 33 0.26
ACGTcount: A:0.24, C:0.21, G:0.10, T:0.44
Consensus pattern (20 bp):
TTTCATGCCTTAATGCATCA
Found at i:895488 original size:46 final size:46
Alignment explanation
Indices: 895423--895607 Score: 282
Period size: 46 Copynumber: 4.0 Consensus size: 46
895413 TGTCTTTAAT
* *
895423 GCATCATTTCATGCCTTAATGCATCATTTCATGCATTTCATTTATA
1 GCATCCTTTCATGCCTTAATGCATCATTTCATGCATTTCATTTATG
* *
895469 GTATCCTTTCAT-CCTTTAATGCATCATTTCACGCATTTCATTTATG
1 GCATCCTTTCATGCC-TTAATGCATCATTTCATGCATTTCATTTATG
* * *
895515 GCATCCTTTCATGACTTAATGCATCATTTCATGGATTTAATTTATG
1 GCATCCTTTCATGCCTTAATGCATCATTTCATGCATTTCATTTATG
*
895561 GCATCATTTCATGCCTTAATGCATCATTTCATGCATTTCATTTATG
1 GCATCCTTTCATGCCTTAATGCATCATTTCATGCATTTCATTTATG
895607 G
1 G
895608 ATTCGTTTTA
Statistics
Matches: 124, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
45 2 0.02
46 121 0.98
47 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.11, T:0.44
Consensus pattern (46 bp):
GCATCCTTTCATGCCTTAATGCATCATTTCATGCATTTCATTTATG
Found at i:899380 original size:39 final size:38
Alignment explanation
Indices: 899337--899624 Score: 235
Period size: 39 Copynumber: 7.7 Consensus size: 38
899327 ATATTAATAT
* *
899337 AAAATAGATTTTGAAAATATATATAACATATAATTTTTG
1 AAAATA-ATTTTGAAAATATATATAATATATAAGTTTTG
* * * * *
899376 AAAAT-ATTTTAAAAACAGATATAACATATAATTTTTG
1 AAAATAATTTTGAAAATATATATAATATATAAGTTTTG
*
899413 AAAAT-ATTTT-AAAA-ATATATAATATAT-AGTTTTTT
1 AAAATAATTTTGAAAATATATATAATATATAAG-TTTTG
899448 AAAA-ATATTTTGAAAATATATA-AATAATATAAAGTTTTG
1 AAAATA-ATTTTGAAAATATATATAAT-ATAT-AAGTTTTG
* *
899487 AAAACATTTTTGAAAAAATATATATAATATAT-AGTTTTG
1 AAAATAATTTTG--AAAATATATATAATATATAAGTTTTG
*
899526 -AAATATTTTTTGAAAAAATATATATAATATATAA-TTTTG
1 AAAATA-ATTTTG--AAAATATATATAATATATAAGTTTTG
* * *
899565 GAAA-CATTTTGGAAATATATATAATATAT-AGTTTT-
1 AAAATAATTTTGAAAATATATATAATATATAAGTTTTG
***
899600 AAAACGTTTTTG-AAATATATATAAT
1 AAAATAATTTTGAAAATATATATAAT
899625 TAAAAAAAAT
Statistics
Matches: 216, Mismatches: 16, Indels: 38
0.80 0.06 0.14
Matches are distributed among these distances:
34 1 0.00
35 36 0.17
36 35 0.16
37 46 0.21
38 18 0.08
39 56 0.26
40 7 0.03
41 14 0.06
42 3 0.01
ACGTcount: A:0.49, C:0.02, G:0.07, T:0.42
Consensus pattern (38 bp):
AAAATAATTTTGAAAATATATATAATATATAAGTTTTG
Found at i:899398 original size:37 final size:36
Alignment explanation
Indices: 899344--899599 Score: 187
Period size: 36 Copynumber: 6.8 Consensus size: 36
899334 TATAAAATAG
*
899344 ATTTTGAAAATATATATAACATATAATTTTTGAAAAT
1 ATTTT-AAAAAATATATAACATATAATTTTTGAAAAT
*
899381 ATTTTAAAAACAGATATAACATATAATTTTTGAAAAT
1 ATTTTAAAAA-ATATATAACATATAATTTTTGAAAAT
* * *
899418 ATTTT-AAAAATATATAATATATAGTTTTTTAAAAAT
1 ATTTTAAAAAATATATAACATATA-ATTTTTGAAAAT
* * * *
899454 ATTTT-GAAAATATATAAATAATATAAAGTTTTGAAAAC
1 ATTTTAAAAAATATAT-AA-CATAT-AATTTTTGAAAAT
*
899492 ATTTTTGAAAAAATATATATA-ATATATAGTTTTGAAATAT
1 A-TTTT-AAAAAATATATA-ACATATA-ATTTTTGAAA-AT
* * *
899532 TTTTTGAAAAAATATATATAATATATAATTTTGGAAACAT
1 ATTTT--AAAAA-ATATATAACATATAATTTTTGAAA-AT
** * * *
899572 -TTTGGAAATATATATAATATATAGTTTT
1 ATTTTAAAAAATATATAACATATAATTTT
899600 AAAACGTTTT
Statistics
Matches: 182, Mismatches: 23, Indels: 29
0.78 0.10 0.12
Matches are distributed among these distances:
35 12 0.07
36 50 0.27
37 40 0.22
38 14 0.08
39 26 0.14
40 18 0.10
41 22 0.12
ACGTcount: A:0.48, C:0.02, G:0.07, T:0.43
Consensus pattern (36 bp):
ATTTTAAAAAATATATAACATATAATTTTTGAAAAT
Found at i:899622 original size:75 final size:73
Alignment explanation
Indices: 899344--899622 Score: 273
Period size: 75 Copynumber: 3.7 Consensus size: 73
899334 TATAAAATAG
* * * * * *
899344 ATTTTGAAAATATATATAACATATAATTTTTGAAAATATTTT-AAAA-ACAGATATAACATATAA
1 ATTTTGAAAATATATATAATATAT-AGTTTTAAAAAT-TTTTGAAAATATATATATAATATATAA
*
899407 TTTTTGAAA-
64 TTTTGGAAAC
* *
899416 ATATTTTAAAA-ATATATAATATATAGTTTTTTAAAAATATTTTGAAAATATATAAATAATATA-
1 AT-TTTGAAAATATATATAATATATAG--TTTTAAAAAT-TTTTGAAAATATATATATAATATAT
*
899479 AAGTTTTGAAAAC
62 AA-TTTTGGAAAC
* *
899492 ATTTTTGAAAAAATATATATAATATATAGTTTTGAAATATTTTTTGAAAAAATATATATAATATA
1 A-TTTTG--AAAATATATATAATATATAGTTTT-AAA-AATTTTTGAAAATATATATATAATATA
899557 TAATTTTGGAAAC
61 TAATTTTGGAAAC
* *
899570 ATTTTGGAAATATATATAATATATAGTTTTAAAACGTTTTTG-AAATATATATA
1 ATTTTGAAAATATATATAATATATAGTTTTAAAA-ATTTTTGAAAATATATATA
899623 ATTAAAAAAA
Statistics
Matches: 174, Mismatches: 18, Indels: 29
0.79 0.08 0.13
Matches are distributed among these distances:
71 1 0.01
72 14 0.08
73 32 0.18
74 15 0.09
75 40 0.23
76 4 0.02
77 10 0.06
78 39 0.22
79 19 0.11
ACGTcount: A:0.48, C:0.02, G:0.07, T:0.43
Consensus pattern (73 bp):
ATTTTGAAAATATATATAATATATAGTTTTAAAAATTTTTGAAAATATATATATAATATATAATT
TTGGAAAC
Found at i:899664 original size:18 final size:18
Alignment explanation
Indices: 899637--899674 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
899627 AAAAAAATGA
899637 TTTATAA-TTTACTTATTT
1 TTTATAATTTTA-TTATTT
*
899655 TTTATTATTTTATTATTT
1 TTTATAATTTTATTATTT
899673 TT
1 TT
899675 ATTTCTTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 14 0.78
19 4 0.22
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.74
Consensus pattern (18 bp):
TTTATAATTTTATTATTT
Found at i:899683 original size:8 final size:7
Alignment explanation
Indices: 899649--899696 Score: 53
Period size: 7 Copynumber: 6.4 Consensus size: 7
899639 TATAATTTAC
899649 TTATTTT
1 TTATTTT
899656 TTATTATT
1 TTATT-TT
899664 TTATTATTT
1 TTA-T-TTT
899673 TTATTTCT
1 TTATTT-T
899681 TTA-TTT
1 TTATTTT
899687 TTATTTT
1 TTATTTT
899694 TTA
1 TTA
899697 GGTTCGAATA
Statistics
Matches: 36, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
6 4 0.11
7 15 0.42
8 10 0.28
9 6 0.17
10 1 0.03
ACGTcount: A:0.19, C:0.02, G:0.00, T:0.79
Consensus pattern (7 bp):
TTATTTT
Found at i:900934 original size:8 final size:9
Alignment explanation
Indices: 900922--900974 Score: 54
Period size: 10 Copynumber: 5.8 Consensus size: 9
900912 TTCTTTTCAA
900922 ATTTTATTT
1 ATTTTATTT
900931 -TTTTATTT
1 ATTTTATTT
** *
900939 ATTTTCCTA
1 ATTTTATTT
900948 ATTTTATTTT
1 ATTTTA-TTT
900958 ATTTTATTCT
1 ATTTTATT-T
900968 ATTTTAT
1 ATTTTAT
900975 CTCTTTTCAC
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
8 8 0.23
9 12 0.34
10 15 0.43
ACGTcount: A:0.21, C:0.06, G:0.00, T:0.74
Consensus pattern (9 bp):
ATTTTATTT
Found at i:905093 original size:21 final size:21
Alignment explanation
Indices: 905063--905122 Score: 104
Period size: 21 Copynumber: 2.9 Consensus size: 21
905053 CATTACAGGA
905063 ATTT-ATGGCTTCAACAAAAG
1 ATTTCATGGCTTCAACAAAAG
*
905083 GTTTCATGGCTTCAACAAAAG
1 ATTTCATGGCTTCAACAAAAG
905104 ATTTCATGGCTTCAACAAA
1 ATTTCATGGCTTCAACAAA
905123 GACCTTGATG
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
20 3 0.08
21 34 0.92
ACGTcount: A:0.37, C:0.18, G:0.15, T:0.30
Consensus pattern (21 bp):
ATTTCATGGCTTCAACAAAAG
Found at i:912002 original size:2 final size:2
Alignment explanation
Indices: 911995--912024 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
911985 CTGACTCCCC
*
911995 TA TA TA TA TA TA TA TA TA TA TA TA TT TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
912025 AAAGAGAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:917334 original size:64 final size:64
Alignment explanation
Indices: 917162--917338 Score: 202
Period size: 64 Copynumber: 2.8 Consensus size: 64
917152 ATAAATTGAG
* *
917162 CATCAAATGCATTTCATTCATCGATGCA-TATATATGCATCGATGCACTCAGAGTTTTATGAAAA
1 CATCAAATGCATTTCATGCATCGATGCACT-CATATGCATCGATGCACTCAGAGTTTTATGAAAA
* *
917226 CATCAAATGCATTTGATGCATCGATGCAC-CAGCCATGCATCGATGCACTCAG-GCTATTT-TG-
1 CATCAAATGCATTTCATGCATCGATGCACTCA--TATGCATCGATGCACTCAGAG-T-TTTATGA
917287 AAA
62 AAA
* * *
917290 CATCGAATGCATTTTATGCATCGATGCACTCATAGTGCACCGATGCACT
1 CATCAAATGCATTTCATGCATCGATGCACTCATA-TGCATCGATGCACT
917339 AAGGGTCCAA
Statistics
Matches: 98, Mismatches: 8, Indels: 14
0.82 0.07 0.12
Matches are distributed among these distances:
63 2 0.02
64 70 0.71
65 23 0.23
66 3 0.03
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (64 bp):
CATCAAATGCATTTCATGCATCGATGCACTCATATGCATCGATGCACTCAGAGTTTTATGAAAA
Found at i:925841 original size:65 final size:62
Alignment explanation
Indices: 925730--925923 Score: 163
Period size: 65 Copynumber: 3.1 Consensus size: 62
925720 GTGATGCACT
* * ** *
925730 GATGCACCAATCCATGCATCGATGCACTAATGGAATAAATTG-AACATCAAATGCATTTCATGCA
1 GATGCA-CAA-CCATGCATCGATGCACTCA-GG-CTATTTTGAAACATCGAATGCATTT-ATGCA
925794 TC
61 TC
*
925796 GATGCACATACTATGCATCGATGCACTCAGAG-T-TTTATGAAAACATCGAATGCA-TT-TG-AT
1 GATGCACA-ACCATGCATCGATGCACTCAG-GCTATTT-TG-AAACATCGAATGCATTTATGCAT
925856 -
62 C
* *
925856 G-TAC-CAACCATGCATCGATGCACTCAGGCTATTTTGAAACATGGAATGCATTTTATGCATC
1 GATGCACAACCATGCATCGATGCACTCAGGCTATTTTGAAACATCGAATGCA-TTTATGCATC
925917 GATGCAC
1 GATGCAC
925924 TCTTAGTGCA
Statistics
Matches: 105, Mismatches: 9, Indels: 31
0.72 0.06 0.21
Matches are distributed among these distances:
56 14 0.13
57 23 0.22
58 7 0.07
59 4 0.04
60 3 0.03
61 3 0.03
62 5 0.05
63 4 0.04
64 3 0.03
65 32 0.30
66 7 0.07
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.28
Consensus pattern (62 bp):
GATGCACAACCATGCATCGATGCACTCAGGCTATTTTGAAACATCGAATGCATTTATGCATC
Found at i:925849 original size:56 final size:55
Alignment explanation
Indices: 925789--925906 Score: 134
Period size: 57 Copynumber: 2.1 Consensus size: 55
925779 AATGCATTTC
*
925789 ATGCATCGATGCA-CATACTATGCATCGATGCACTCAGAG-T-TTTATGAAAACATCGA
1 ATGCATCGATGCACCA-ACCATGCATCGATGCACTCAG-GCTATTT-TG-AAACATCGA
* * *
925845 ATGCATTTGATGTACCAACCATGCATCGATGCACTCAGGCTATTTTGAAACATGGA
1 ATGCA-TCGATGCACCAACCATGCATCGATGCACTCAGGCTATTTTGAAACATCGA
925901 ATGCAT
1 ATGCAT
925907 TTTATGCATC
Statistics
Matches: 54, Mismatches: 4, Indels: 9
0.81 0.06 0.13
Matches are distributed among these distances:
55 1 0.02
56 19 0.35
57 29 0.54
58 5 0.09
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (55 bp):
ATGCATCGATGCACCAACCATGCATCGATGCACTCAGGCTATTTTGAAACATCGA
Found at i:929563 original size:38 final size:36
Alignment explanation
Indices: 929438--929754 Score: 289
Period size: 37 Copynumber: 8.2 Consensus size: 36
929428 ATAGTATAAT
* *
929438 TTTTTAAAACATTTTGAAAACATATATAATATATAG
1 TTTTGAAAACATTTTGAAAATATATATAATATATAG
* * *
929474 TTTTTGGAAACATTTTGAAAACATATATTATATATAG
1 -TTTTGAAAACATTTTGAAAATATATATAATATATAG
929511 TTTTTGAAAACATTTTGAAAATATATATTTAATATATAG
1 -TTTTGAAAACATTTTGAAAATATATA--TAATATATAG
929550 TTTTGAAAACATTTTCGAAAACTATATATAATATATAG
1 TTTTGAAAACATTTT-GAAAA-TATATATAATATATAG
929588 TTTTGAAAACATTTTTGAATATATATATATATATATATATAG
1 TTTTGAAAACA-TTTTG-A-A-A-ATATATATA-ATATATAG
*
929630 TTTTGAAAACATTTTTAGAAAATATATATAATATATAATATATAA
1 TTTTGAAAACA-TTTT-G---A-A-A-AT-ATATATAATATATAG
* *
929675 TTTTGGAAACATTTTTG-AAATATATATAATATGTAG
1 TTTTGAAAACA-TTTTGAAAATATATATAATATATAG
** * *
929711 TTTT-AAAATGTTTTTG-AAATAAATATAATATATAA
1 TTTTGAAAA-CATTTTGAAAATATATATAATATATAG
*
929746 TTTTAAAAA
1 TTTTGAAAA
929755 ATGATTTATA
Statistics
Matches: 248, Mismatches: 16, Indels: 33
0.84 0.05 0.11
Matches are distributed among these distances:
35 28 0.11
36 21 0.08
37 60 0.24
38 38 0.15
39 20 0.08
40 7 0.03
41 9 0.04
42 25 0.10
43 1 0.00
44 1 0.00
45 31 0.12
46 7 0.03
ACGTcount: A:0.45, C:0.03, G:0.08, T:0.44
Consensus pattern (36 bp):
TTTTGAAAACATTTTGAAAATATATATAATATATAG
Found at i:929698 original size:80 final size:79
Alignment explanation
Indices: 929432--929746 Score: 300
Period size: 80 Copynumber: 4.0 Consensus size: 79
929422 ATTAATATAG
* * *
929432 TATAATTTTTTAAAACA-TTTTGAAAACATATATAATATATAGTTTTTGGAAACA-TTTTGAAA-
1 TATAA-TTTTGAAAACATTTTTGAAAATATATATAATATATAG-TTTTGAAAACATTTTTGAAAT
929494 ACATAT-AT-TAT-ATA
64 A-ATATAATATATAATA
*
929508 TAGT--TTTTGAAAACA-TTTTGAAAATATATATTTAATATATAGTTTTGAAAACATTTTCG-AA
1 TA-TAATTTTGAAAACATTTTTGAAAATATATA--TAATATATAGTTTTGAAAACATTTTTGAAA
*
929569 -AA-CT-ATATATAATA
63 TAATATAATATATAATA
*
929583 TATAGTTTTGAAAACATTTTTGAATATATATATATATATATATATAGTTTTGAAAACATTTTTAG
1 TATAATTTTGAAAACATTTTTG-A-A-A-ATATATATA-ATATATAGTTTTGAAAACATTTTT-G
929648 AAAATATATATAATATATAATA
60 -AAATA-ATATAATATATAATA
* * **
929670 TATAATTTTGGAAACATTTTTG-AAATATATATAATATGTAGTTTT-AAAATGTTTTTGAAATAA
1 TATAATTTTGAAAACATTTTTGAAAATATATATAATATATAGTTTTGAAAACATTTTTGAAAT-A
929733 ATATAATATATAAT
65 ATATAATATATAAT
929747 TTTAAAAAAT
Statistics
Matches: 205, Mismatches: 12, Indels: 42
0.79 0.05 0.16
Matches are distributed among these distances:
73 3 0.01
74 29 0.14
75 18 0.09
76 27 0.13
77 6 0.03
78 19 0.09
79 5 0.02
80 33 0.16
81 19 0.09
82 9 0.04
83 3 0.01
84 2 0.01
85 1 0.00
86 1 0.00
87 30 0.15
ACGTcount: A:0.45, C:0.03, G:0.08, T:0.44
Consensus pattern (79 bp):
TATAATTTTGAAAACATTTTTGAAAATATATATAATATATAGTTTTGAAAACATTTTTGAAATAA
TATAATATATAATA
Found at i:929731 original size:35 final size:35
Alignment explanation
Indices: 929657--929753 Score: 122
Period size: 35 Copynumber: 2.7 Consensus size: 35
929647 GAAAATATAT
* **
929657 ATAATATATAATATATAATTTTGGAAACATTTTTGAA
1 ATAA-ATATAATATATAATTTT-AAAATGTTTTTGAA
* * *
929694 ATATATATAATATGTAGTTTTAAAATGTTTTTGAA
1 ATAAATATAATATATAATTTTAAAATGTTTTTGAA
929729 ATAAATATAATATATAATTTTAAAA
1 ATAAATATAATATATAATTTTAAAA
929754 AATGATTTAT
Statistics
Matches: 51, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
35 33 0.65
36 15 0.29
37 3 0.06
ACGTcount: A:0.47, C:0.01, G:0.07, T:0.44
Consensus pattern (35 bp):
ATAAATATAATATATAATTTTAAAATGTTTTTGAA
Found at i:929794 original size:7 final size:7
Alignment explanation
Indices: 929771--929815 Score: 56
Period size: 7 Copynumber: 6.3 Consensus size: 7
929761 TATAGTTTAC
929771 TTATTTCT
1 TTATTT-T
*
929779 TTTTTTT
1 TTATTTT
929786 TTATTTT
1 TTATTTT
929793 TT-TATTT
1 TTAT-TTT
929800 TTATTTT
1 TTATTTT
929807 TTATTTT
1 TTATTTT
929814 TT
1 TT
929816 TATTCTATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
6 1 0.03
7 26 0.79
8 6 0.18
ACGTcount: A:0.11, C:0.02, G:0.00, T:0.87
Consensus pattern (7 bp):
TTATTTT
Found at i:929794 original size:8 final size:8
Alignment explanation
Indices: 929771--929819 Score: 61
Period size: 8 Copynumber: 6.6 Consensus size: 8
929761 TATAGTTTAC
*
929771 TTATTTCT
1 TTATTTTT
929779 TT-TTTTT
1 TTATTTTT
929786 TTATTTTT
1 TTATTTTT
929794 TTA--TTT
1 TTATTTTT
929800 TTA-TTTT
1 TTATTTTT
929807 TTATTTTT
1 TTATTTTT
929815 TTATT
1 TTATT
929820 CTATTTTCAG
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
6 6 0.16
7 12 0.32
8 19 0.51
ACGTcount: A:0.12, C:0.02, G:0.00, T:0.86
Consensus pattern (8 bp):
TTATTTTT
Found at i:929800 original size:13 final size:12
Alignment explanation
Indices: 929771--929826 Score: 60
Period size: 13 Copynumber: 4.6 Consensus size: 12
929761 TATAGTTTAC
*
929771 TTATTTCTTTTT
1 TTATTTTTTTTT
*
929783 TT-TTTATTTTT
1 TTATTTTTTTTT
929794 TTATTTTTATTTT
1 TTATTTTT-TTTT
929807 TTATTTTTTTATT
1 TTATTTTTTT-TT
*
929820 CTATTTT
1 TTATTTT
929827 CAGGTTCGAA
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
11 10 0.26
12 8 0.21
13 20 0.53
ACGTcount: A:0.12, C:0.04, G:0.00, T:0.84
Consensus pattern (12 bp):
TTATTTTTTTTT
Found at i:929800 original size:14 final size:14
Alignment explanation
Indices: 929771--929814 Score: 63
Period size: 13 Copynumber: 3.1 Consensus size: 14
929761 TATAGTTTAC
*
929771 TTATTTCTTTTTTTT
1 TTATTT-TTTTATTT
929786 TTATTTTTTTATTT
1 TTATTTTTTTATTT
929800 TTA-TTTTTTATTT
1 TTATTTTTTTATTT
929813 TT
1 TT
929815 TTATTCTATT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
13 12 0.43
14 10 0.36
15 6 0.21
ACGTcount: A:0.11, C:0.02, G:0.00, T:0.86
Consensus pattern (14 bp):
TTATTTTTTTATTT
Found at i:929808 original size:21 final size:20
Alignment explanation
Indices: 929778--929819 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 20
929768 TACTTATTTC
929778 TTTTTTTTTTATTTTTTTAT
1 TTTTTTTTTTATTTTTTTAT
929798 TTTTATTTTTTATTTTTTTAT
1 TTTT-TTTTTTATTTTTTTAT
929819 T
1 T
929820 CTATTTTCAG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.19
21 17 0.81
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (20 bp):
TTTTTTTTTTATTTTTTTAT
Found at i:933957 original size:16 final size:16
Alignment explanation
Indices: 933933--933971 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
933923 TCCCCATGTA
933933 ATATA-TATAT-TA-T
1 ATATAGTATATATACT
933946 ATATAGTATATATACT
1 ATATAGTATATATACT
933962 ATATAGTATA
1 ATATAGTATA
933972 GTAGTGTATA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 5 0.22
14 5 0.22
15 2 0.09
16 11 0.48
ACGTcount: A:0.46, C:0.03, G:0.05, T:0.46
Consensus pattern (16 bp):
ATATAGTATATATACT
Found at i:949155 original size:18 final size:18
Alignment explanation
Indices: 949117--949155 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
949107 TATGAATGGC
*
949117 GTTGTTGTGGCAAGTGGT
1 GTTGTTGTGGCAAGTAGT
* *
949135 GTTGTTGTGGTAAGTATT
1 GTTGTTGTGGCAAGTAGT
949153 GTT
1 GTT
949156 AGGTTAAAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.13, C:0.03, G:0.38, T:0.46
Consensus pattern (18 bp):
GTTGTTGTGGCAAGTAGT
Found at i:950203 original size:17 final size:16
Alignment explanation
Indices: 950181--950233 Score: 52
Period size: 17 Copynumber: 3.1 Consensus size: 16
950171 ATTCGAGGGT
950181 TAGTTAGATTAATGAAA
1 TAGTTA-ATTAATGAAA
* *
950198 TAGTTATATGAATGAAC
1 TAGTTA-ATTAATGAAA
*
950215 TAGTTTAATTAATCAAA
1 TAG-TTAATTAATGAAA
950232 TA
1 TA
950234 ACTTTATTGA
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
17 26 0.90
18 3 0.10
ACGTcount: A:0.45, C:0.04, G:0.13, T:0.38
Consensus pattern (16 bp):
TAGTTAATTAATGAAA
Found at i:952217 original size:45 final size:44
Alignment explanation
Indices: 952168--952293 Score: 119
Period size: 45 Copynumber: 2.8 Consensus size: 44
952158 GAATTGTTGG
* *
952168 GGCATTTCTTTTATAGGTTTCAGTAATGGCTTTGCAAATTGTCAA
1 GGCATTTCTTTTAT-GGTTTCAATAATGGCTTTGAAAATTGTCAA
* ** * ***
952213 GGCATTCCCTTTGCTGGTTTCAATAATTGCTTTGAAAATTGTTGG
1 GGCATT-TCTTTTATGGTTTCAATAATGGCTTTGAAAATTGTCAA
*
952258 GGCA-TTCTTTTTATTGGTTTCAACAATGGCTTTGAA
1 GGCATTTC-TTTTA-TGGTTTCAATAATGGCTTTGAA
952294 TTATTACTCA
Statistics
Matches: 64, Mismatches: 14, Indels: 6
0.76 0.17 0.07
Matches are distributed among these distances:
43 1 0.02
44 4 0.06
45 54 0.84
46 5 0.08
ACGTcount: A:0.22, C:0.14, G:0.21, T:0.43
Consensus pattern (44 bp):
GGCATTTCTTTTATGGTTTCAATAATGGCTTTGAAAATTGTCAA
Found at i:954302 original size:17 final size:16
Alignment explanation
Indices: 954282--954334 Score: 70
Period size: 17 Copynumber: 3.1 Consensus size: 16
954272 ATTAGAGGGT
954282 TAGTTAGATTAATGAAC
1 TAGTTA-ATTAATGAAC
*
954299 TAGTTATATGAATGAAC
1 TAGTTA-ATTAATGAAC
954316 TAGTTTAATTAATGAAC
1 TAG-TTAATTAATGAAC
954333 TA
1 TA
954335 AATTTATTGA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
17 29 0.91
18 3 0.09
ACGTcount: A:0.42, C:0.06, G:0.15, T:0.38
Consensus pattern (16 bp):
TAGTTAATTAATGAAC
Found at i:954347 original size:18 final size:18
Alignment explanation
Indices: 954302--954353 Score: 63
Period size: 18 Copynumber: 2.9 Consensus size: 18
954292 AATGAACTAG
*
954302 TTATATGAATGAACT-AGT
1 TTAT-TGAATGAACTAAAT
954320 TTAATT-AATGAACTAAAT
1 TT-ATTGAATGAACTAAAT
954338 TTATTGAATGAACTAA
1 TTATTGAATGAACTAA
954354 GGTACATGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
17 11 0.37
18 17 0.57
19 2 0.07
ACGTcount: A:0.44, C:0.06, G:0.12, T:0.38
Consensus pattern (18 bp):
TTATTGAATGAACTAAAT
Found at i:955526 original size:27 final size:28
Alignment explanation
Indices: 955494--955546 Score: 81
Period size: 27 Copynumber: 1.9 Consensus size: 28
955484 ATATCATTCA
*
955494 TTGCATGATTTTTACTAG-TGCATGAAT
1 TTGCATGAGTTTTACTAGTTGCATGAAT
*
955521 TTGCATGAGTTTTATTAGTTGCATGA
1 TTGCATGAGTTTTACTAGTTGCATGA
955547 CATTAAATCA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 16 0.70
28 7 0.30
ACGTcount: A:0.25, C:0.09, G:0.21, T:0.45
Consensus pattern (28 bp):
TTGCATGAGTTTTACTAGTTGCATGAAT
Found at i:960799 original size:54 final size:54
Alignment explanation
Indices: 960738--961132 Score: 265
Period size: 54 Copynumber: 7.3 Consensus size: 54
960728 TTCATTGCGA
* * * *
960738 TGCACACATAGTGCCTATACTGTCATTCATAAACATATTATGAACTCCGTCG-GT
1 TGCACACATAGTGCCTAAACGGTCATTCATAAACATATGATAAACTCCGT-GAGT
* * ** * *
960792 TGTACACATGGTGCCTAAACGGTTGTTCATCAACATATGATAAATTCCGTGAGT
1 TGCACACATAGTGCCTAAACGGTCATTCATAAACATATGATAAACTCCGTGAGT
** * * *
960846 TGCACACATAGTG-CTGAAACGGTTGTTCATTAACATATGATGAATTCCGTGAGT
1 TGCACACATAGTGCCT-AAACGGTCATTCATAAACATATGATAAACTCCGTGAGT
* * * ** * * * * * *
960900 TGCACACTTAGTGCCGAAACAGTTGTTCATCAATATATGATGAATTCCTTGATT
1 TGCACACATAGTGCCTAAACGGTCATTCATAAACATATGATAAACTCCGTGAGT
* * * ** * * * *
960954 TGCACACTTAGTTCCGAAACGGTTGTTCATCAACATATGATGAATTCCCTGAGT
1 TGCACACATAGTGCCTAAACGGTCATTCATAAACATATGATAAACTCCGTGAGT
* * ** * * *
961008 TGCACACTTAGTG-CTGAAATGGTTGTTCATCAACATATGATGAATTCCGTGAGT
1 TGCACACATAGTGCCT-AAACGGTCATTCATAAACATATGATAAACTCCGTGAGT
* * * ** * * * * *
961062 TGCACACTTAGTGCCGAAACAGTTGTTCATCAACATATGATTAATTCCTTGAAT
1 TGCACACATAGTGCCTAAACGGTCATTCATAAACATATGATAAACTCCGTGAGT
*
961116 TTCACACATAGTGCCTA
1 TGCACACATAGTGCCTA
961133 TAGTACACAT
Statistics
Matches: 297, Mismatches: 39, Indels: 10
0.86 0.11 0.03
Matches are distributed among these distances:
53 4 0.01
54 291 0.98
55 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.32
Consensus pattern (54 bp):
TGCACACATAGTGCCTAAACGGTCATTCATAAACATATGATAAACTCCGTGAGT
Found at i:960927 original size:108 final size:108
Alignment explanation
Indices: 960763--961130 Score: 495
Period size: 108 Copynumber: 3.4 Consensus size: 108
960753 TATACTGTCA
* * * * * *
960763 TTCATAAACATATTATGAACTCCGTCG-GTTGTACACATGGTGCCTAAACGGTTGTTCATCAACA
1 TTCATCAACATATGATGAATTCCGT-GAGTTGCACACATAGTGCCGAAACGGTTGTTCATCAACA
* * *
960827 TATGATAAATTCCGTGAGTTGCACACATAGTGCTGAAACGGTTG
65 TATGATGAATTCCGTGAGTTGCACACTTAGTGCCGAAACGGTTG
* * * *
960871 TTCATTAACATATGATGAATTCCGTGAGTTGCACACTTAGTGCCGAAACAGTTGTTCATCAATAT
1 TTCATCAACATATGATGAATTCCGTGAGTTGCACACATAGTGCCGAAACGGTTGTTCATCAACAT
* * *
960936 ATGATGAATTCCTTGATTTGCACACTTAGTTCCGAAACGGTTG
66 ATGATGAATTCCGTGAGTTGCACACTTAGTGCCGAAACGGTTG
* * * *
960979 TTCATCAACATATGATGAATTCCCTGAGTTGCACACTTAGTGCTGAAATGGTTGTTCATCAACAT
1 TTCATCAACATATGATGAATTCCGTGAGTTGCACACATAGTGCCGAAACGGTTGTTCATCAACAT
*
961044 ATGATGAATTCCGTGAGTTGCACACTTAGTGCCGAAACAGTTG
66 ATGATGAATTCCGTGAGTTGCACACTTAGTGCCGAAACGGTTG
* * * *
961087 TTCATCAACATATGATTAATTCCTTGAATTTCACACATAGTGCC
1 TTCATCAACATATGATGAATTCCGTGAGTTGCACACATAGTGCC
961131 TATAGTACAC
Statistics
Matches: 228, Mismatches: 31, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
107 1 0.00
108 227 1.00
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (108 bp):
TTCATCAACATATGATGAATTCCGTGAGTTGCACACATAGTGCCGAAACGGTTGTTCATCAACAT
ATGATGAATTCCGTGAGTTGCACACTTAGTGCCGAAACGGTTG
Found at i:961009 original size:162 final size:162
Alignment explanation
Indices: 960808--961127 Score: 552
Period size: 162 Copynumber: 2.0 Consensus size: 162
960798 CATGGTGCCT
*
960808 AAACGGTTGTTCATCAACATATGATAAATTCCGTGAGTTGCACACATAGTGCTGAAACGGTTGTT
1 AAACGGTTGTTCATCAACATATGATAAATTCCCTGAGTTGCACACATAGTGCTGAAACGGTTGTT
* *
960873 CATTAACATATGATGAATTCCGTGAGTTGCACACTTAGTGCCGAAACAGTTGTTCATCAATATAT
66 CATCAACATATGATGAATTCCGTGAGTTGCACACTTAGTGCCGAAACAGTTGTTCATCAACATAT
*
960938 GATGAATTCCTTG-ATTTGCACACTTAGTTCCG
131 GATGAATTCCTTGAATTT-CACACATAGTTCCG
* * *
960970 AAACGGTTGTTCATCAACATATGATGAATTCCCTGAGTTGCACACTTAGTGCTGAAATGGTTGTT
1 AAACGGTTGTTCATCAACATATGATAAATTCCCTGAGTTGCACACATAGTGCTGAAACGGTTGTT
961035 CATCAACATATGATGAATTCCGTGAGTTGCACACTTAGTGCCGAAACAGTTGTTCATCAACATAT
66 CATCAACATATGATGAATTCCGTGAGTTGCACACTTAGTGCCGAAACAGTTGTTCATCAACATAT
*
961100 GATTAATTCCTTGAATTTCACACATAGT
131 GATGAATTCCTTGAATTTCACACATAGT
961128 GCCTATAGTA
Statistics
Matches: 149, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
162 145 0.97
163 4 0.03
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33
Consensus pattern (162 bp):
AAACGGTTGTTCATCAACATATGATAAATTCCCTGAGTTGCACACATAGTGCTGAAACGGTTGTT
CATCAACATATGATGAATTCCGTGAGTTGCACACTTAGTGCCGAAACAGTTGTTCATCAACATAT
GATGAATTCCTTGAATTTCACACATAGTTCCG
Found at i:966638 original size:54 final size:54
Alignment explanation
Indices: 966580--966992 Score: 495
Period size: 54 Copynumber: 7.8 Consensus size: 54
966570 TATACAGTTA
* * * * * * *
966580 TTCATAAACATATGATGAACTCCGTGGGTTGCACACATGGTGCCTAAACGGTTA
1 TTCATCAACATATGATGAATTCCGTGAGTTGCACACTTAGTGCCGAAACGGTTG
* * * * *
966634 TTCATCAACATATGATGAATTTCGTGGGTTGAACACTTAGTGCCGAAATGATTG
1 TTCATCAACATATGATGAATTCCGTGAGTTGCACACTTAGTGCCGAAACGGTTG
966688 TTCATCAACATATGATGAATTCCGTGAGTTG-AGCACTTAGTGCCGAAACGGTTG
1 TTCATCAACATATGATGAATTCCGTGAGTTGCA-CACTTAGTGCCGAAACGGTTG
* *
966742 TTCATCAACATATGATGAATTCCGTGAGTTGTACACTTAGTGCCGAAAAGGTTG
1 TTCATCAACATATGATGAATTCCGTGAGTTGCACACTTAGTGCCGAAACGGTTG
* * *
966796 TTCATCAACATATGATGAATT-CGTGAGTTGCACACTTATTGCCGAAATGGTTT
1 TTCATCAACATATGATGAATTCCGTGAGTTGCACACTTAGTGCCGAAACGGTTG
* * *
966849 TTCATCAACATATGATGAATTCCGTGAGTTGCACACTTATTGCTGAAACAGTTG
1 TTCATCAACATATGATGAATTCCGTGAGTTGCACACTTAGTGCCGAAACGGTTG
* * * *
966903 TTCATCAACATATGATGAA-----T---TTGCACACTTATTGCCAAAATGATTG
1 TTCATCAACATATGATGAATTCCGTGAGTTGCACACTTAGTGCCGAAACGGTTG
* * * *
966949 ATCATCAACATATGATGAATTTCGTGAATTGCACACATAGTGCC
1 TTCATCAACATATGATGAATTCCGTGAGTTGCACACTTAGTGCC
966993 TATAGTACAC
Statistics
Matches: 317, Mismatches: 31, Indels: 22
0.86 0.08 0.06
Matches are distributed among these distances:
46 39 0.12
49 1 0.00
51 1 0.00
53 50 0.16
54 225 0.71
55 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.32
Consensus pattern (54 bp):
TTCATCAACATATGATGAATTCCGTGAGTTGCACACTTAGTGCCGAAACGGTTG
Found at i:966865 original size:161 final size:162
Alignment explanation
Indices: 966556--966923 Score: 517
Period size: 161 Copynumber: 2.3 Consensus size: 162
966546 TTTATTGCGA
* * * * * * * *
966556 TGCACACGTAGTG-CTATACAGTTATTCATAAACATATGATGAACTCCGTGGGTTGCACACATGG
1 TGCACACTTAGTGCCGAAACAGTTGTTCATCAACATATGATGAATTCCGTGAGTTGCACACATAG
* * *
966620 TGCCTAAACGGTTATTCATCAACATATGATGAATTTCGTGGGTTGAACACTTAGTGCCGAAATGA
66 TGCCGAAAAGGTTATTCATCAACATATGATGAATTTCGTGAGTTGAACACTTAGTGCCGAAATGA
966685 TTGTTCATCAACATATGATGAATTCCGTGAGT
131 TTGTTCATCAACATATGATGAATTCCGTGAGT
* * *
966717 TG-AGCACTTAGTGCCGAAACGGTTGTTCATCAACATATGATGAATTCCGTGAGTTGTACACTTA
1 TGCA-CACTTAGTGCCGAAACAGTTGTTCATCAACATATGATGAATTCCGTGAGTTGCACACATA
* * *
966781 GTGCCGAAAAGGTTGTTCATCAACATATGATGAA-TTCGTGAGTTGCACACTTATTGCCGAAATG
65 GTGCCGAAAAGGTTATTCATCAACATATGATGAATTTCGTGAGTTGAACACTTAGTGCCGAAATG
* *
966845 GTTTTTCATCAACATATGATGAATTCCGTGAGT
130 ATTGTTCATCAACATATGATGAATTCCGTGAGT
* *
966878 TGCACACTTATTGCTGAAACAGTTGTTCATCAACATATGATGAATT
1 TGCACACTTAGTGCCGAAACAGTTGTTCATCAACATATGATGAATT
966924 TGCACACTTA
Statistics
Matches: 182, Mismatches: 22, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
160 1 0.01
161 109 0.60
162 72 0.40
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.32
Consensus pattern (162 bp):
TGCACACTTAGTGCCGAAACAGTTGTTCATCAACATATGATGAATTCCGTGAGTTGCACACATAG
TGCCGAAAAGGTTATTCATCAACATATGATGAATTTCGTGAGTTGAACACTTAGTGCCGAAATGA
TTGTTCATCAACATATGATGAATTCCGTGAGT
Found at i:966954 original size:46 final size:46
Alignment explanation
Indices: 966877--966970 Score: 138
Period size: 46 Copynumber: 2.0 Consensus size: 46
966867 ATTCCGTGAG
* *
966877 TTGCACACTTATTGCTGAAACAGTTGTTCATCAACATATGATGAAT
1 TTGCACACTTATTGCTCAAACAGTTGATCATCAACATATGATGAAT
966923 TTGCACACTTATTGC-CAAA-ATGATTGATCATCAACATATGATGAAT
1 TTGCACACTTATTGCTCAAACA-G-TTGATCATCAACATATGATGAAT
966969 TT
1 TT
966971 CGTGAATTGC
Statistics
Matches: 44, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
44 1 0.02
45 4 0.09
46 39 0.89
ACGTcount: A:0.34, C:0.17, G:0.14, T:0.35
Consensus pattern (46 bp):
TTGCACACTTATTGCTCAAACAGTTGATCATCAACATATGATGAAT
Done.