genome.fa.s4116.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004116.1 Hibiscus syriacus cultivar Beakdansim tig00009006_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  135206

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1262--1294	16	2.1	16	100	0	66	45	18	0	36	1.49
3567--3627	20	2.9	21	87	7	79	18	26	34	21	1.96
12576--12601	3	8.7	3	100	0	52	30	0	0	69	0.89
16119--16198	16	4.9	16	73	18	58	58	1	1	38	1.14
19730--19774	20	2.2	21	84	11	58	57	0	0	42	0.98
20398--20445	23	2.1	22	88	3	69	50	0	0	50	1.00
20409--20442	15	2.2	16	94	5	61	50	0	0	50	1.00
23410--23441	7	4.6	7	96	0	55	0	9	31	59	1.29
24466--24531	27	2.4	27	82	12	73	68	1	4	25	1.18
26837--26889	3	17.7	3	96	0	97	64	0	1	33	1.05
27459--27756	118	2.7	107	89	8	435	28	21	13	37	1.91
27348--27756	220	1.9	217	91	3	678	28	20	13	37	1.90
28495--28782	83	3.5	83	98	0	549	37	22	12	27	1.90
29939--29982	9	4.7	9	86	8	61	2	13	0	84	0.73
29939--29982	19	2.3	18	88	7	61	2	13	0	84	0.73
42846--42898	3	17.7	3	96	0	97	64	0	1	33	1.05
43650--43734	40	2.1	40	100	0	170	27	21	27	24	1.99
52655--52695	21	2.0	21	90	0	64	24	21	24	29	1.99
53404--53484	21	3.8	21	86	1	99	27	24	24	23	2.00
64061--64095	17	1.9	17	88	11	52	71	8	5	14	1.29
87700--88056	180	2.0	180	98	0	687	35	14	15	35	1.88
95739--95829	3	29.7	3	82	4	101	39	2	0	58	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97190--97241	23	2.2	23	83	13	61	44	3	0	51	1.19
97875--97935	24	2.7	22	82	9	72	34	1	1	62	1.15
99571--99623	14	3.7	14	82	9	54	26	15	7	50	1.70
105034--105491	82	5.6	82	94	0	781	28	13	22	35	1.92
105034--105489	248	1.8	247	95	0	822	28	12	22	35	1.91
107770--107845	40	1.9	40	91	0	125	31	14	23	30	1.94
108236--108290	22	2.5	22	90	0	92	34	12	14	38	1.84
108692--109012	113	2.8	113	88	3	443	39	14	18	28	1.89
108954--109054	40	2.5	40	95	0	175	49	8	21	19	1.75
108836--109165	153	2.2	153	88	4	479	42	12	19	25	1.86
108989--109637	113	5.7	113	83	5	792	39	14	18	28	1.89
108729--109280	266	2.1	266	97	0	1050	40	13	18	27	1.88
108994--109637	226	2.8	227	91	1	988	38	14	17	28	1.89
108995--109636	340	1.9	342	87	5	951	38	14	17	28	1.89
109860--109950	3	29.7	3	82	4	92	40	2	0	57	1.11
111324--111375	23	2.2	23	83	13	61	44	3	0	51	1.19
112208--112244	19	2.0	19	89	5	58	59	10	24	5	1.52
117442--117548	55	1.9	55	94	0	187	24	27	16	31	1.96
117626--117651	13	2.0	13	100	0	52	46	0	0	53	1.00
118247--118291	21	2.2	21	84	4	56	57	11	6	24	1.57
118436--118519	35	2.4	35	95	2	150	60	7	9	22	1.52
120105--120153	3	16.3	3	91	0	53	57	2	8	32	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
122046--122084	2	19.5	2	89	10	62	51	2	0	46	1.14
122046--122084	11	3.2	12	89	10	62	51	2	0	46	1.14
122046--122084	15	2.6	15	95	0	69	51	2	0	46	1.14
128597--128626	12	2.5	12	94	0	51	30	0	30	40	1.57

Tables:   1

The End!