Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01004117.1 Hibiscus syriacus cultivar Beakdansim tig00009009_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2456583
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
File 1 of 9
Found at i:12 original size:7 final size:7
Alignment explanation
Indices: 1--7908 Score: 13522
Period size: 7 Copynumber: 1144.9 Consensus size: 7
1 AAACCCT
1 AAACCCT
8 AAACCCT
1 AAACCCT
15 AAAACCCT
1 -AAACCCT
23 AAACCCCT
1 AAA-CCCT
31 AAACCCT
1 AAACCCT
38 AAACCCT
1 AAACCCT
45 AAACCCT
1 AAACCCT
52 AAACCCT
1 AAACCCT
59 AAA-CCT
1 AAACCCT
65 AAACCCT
1 AAACCCT
72 AAACCCT
1 AAACCCT
79 AAACCCT
1 AAACCCT
86 -AACCCT
1 AAACCCT
92 AAACCCT
1 AAACCCT
99 AAACCCT
1 AAACCCT
106 AAACCCT
1 AAACCCT
113 AAACCCT
1 AAACCCT
120 AAACCCT
1 AAACCCT
127 AAACCCT
1 AAACCCT
134 AAACCCT
1 AAACCCT
141 ACCCAACCCT
1 A---AACCCT
151 AAACCCT
1 AAACCCT
158 AAACCCT
1 AAACCCT
165 AAACCCT
1 AAACCCT
172 AAACCCT
1 AAACCCT
179 AAACCCT
1 AAACCCT
186 AAACCCT
1 AAACCCT
193 AAACCCT
1 AAACCCT
200 AAACCCT
1 AAACCCT
207 AAACCCT
1 AAACCCT
214 AAA-CCT
1 AAACCCT
220 AAACCCT
1 AAACCCT
227 AAACCCT
1 AAACCCT
234 AAACCCT
1 AAACCCT
241 AAA-CCT
1 AAACCCT
247 -AACCCT
1 AAACCCT
253 AAACCCT
1 AAACCCT
260 AAACCCT
1 AAACCCT
267 AAACCCT
1 AAACCCT
274 AAACCCT
1 AAACCCT
281 -AACCCT
1 AAACCCT
287 AAACCCT
1 AAACCCT
294 AAACCCT
1 AAACCCT
301 -AACCCT
1 AAACCCT
307 AAACCCT
1 AAACCCT
314 AAACCCT
1 AAACCCT
321 AAACCCT
1 AAACCCT
328 -AACCCT
1 AAACCCT
334 AAAACCCT
1 -AAACCCT
342 AAACCCT
1 AAACCCT
349 AAACCCT
1 AAACCCT
356 AAACCCT
1 AAACCCT
363 AAACCCT
1 AAACCCT
370 AAACCCT
1 AAACCCT
377 AAACCCT
1 AAACCCT
384 AAACCCT
1 AAACCCT
391 -AACCCT
1 AAACCCT
397 AAACCCT
1 AAACCCT
404 AAACCCT
1 AAACCCT
411 -AACCCT
1 AAACCCT
417 AAA-CCT
1 AAACCCT
423 AAACCCT
1 AAACCCT
430 -AA-CCT
1 AAACCCT
435 AAACCCT
1 AAACCCT
442 AAACCCT
1 AAACCCT
449 AAACCCT
1 AAACCCT
456 AAACCCT
1 AAACCCT
463 AAACCCT
1 AAACCCT
470 AAACCCT
1 AAACCCT
477 AAACCCT
1 AAACCCT
484 -AACCCT
1 AAACCCT
490 -AACCC-
1 AAACCCT
495 AAACCCT
1 AAACCCT
502 AAACCCT
1 AAACCCT
509 AAACCCT
1 AAACCCT
516 AAACCCT
1 AAACCCT
523 AAACCCT
1 AAACCCT
530 AAACCCT
1 AAACCCT
537 AAACCCT
1 AAACCCT
544 AAA-CCT
1 AAACCCT
550 AAACCCT
1 AAACCCT
557 AAACCCT
1 AAACCCT
564 -AACCCT
1 AAACCCT
570 AAACCCT
1 AAACCCT
577 AAACCCT
1 AAACCCT
584 AAACCCT
1 AAACCCT
591 AAA-CCT
1 AAACCCT
597 AAACCCT
1 AAACCCT
604 AAACCCT
1 AAACCCT
611 -AACCCT
1 AAACCCT
617 AAACCCT
1 AAACCCT
624 AAACCCT
1 AAACCCT
631 AAACCCT
1 AAACCCT
638 AAACCCT
1 AAACCCT
645 AAACCCT
1 AAACCCT
652 AAACCCT
1 AAACCCT
659 AAACCCT
1 AAACCCT
666 AAACCCT
1 AAACCCT
673 AAACCCT
1 AAACCCT
680 AAACCCT
1 AAACCCT
687 AAACCCT
1 AAACCCT
694 AAACCCT
1 AAACCCT
701 AAACCCT
1 AAACCCT
708 AAACCCT
1 AAACCCT
715 AAACCCT
1 AAACCCT
722 AAACCCT
1 AAACCCT
729 -AACCCT
1 AAACCCT
735 -AACCCT
1 AAACCCT
741 AAACCCT
1 AAACCCT
748 AAACCCT
1 AAACCCT
755 AAACCCT
1 AAACCCT
762 AAACCCT
1 AAACCCT
769 AAA-CCT
1 AAACCCT
775 AAACCCT
1 AAACCCT
782 AAACCCT
1 AAACCCT
789 -AACCCT
1 AAACCCT
795 AAACCCT
1 AAACCCT
802 AAACCCT
1 AAACCCT
809 AAACCCT
1 AAACCCT
816 AAACCCT
1 AAACCCT
823 -AACCCT
1 AAACCCT
829 AAACCCT
1 AAACCCT
836 AAACCCT
1 AAACCCT
843 -AACCCT
1 AAACCCT
849 AAACCCT
1 AAACCCT
856 AAACCCT
1 AAACCCT
863 -AACCCT
1 AAACCCT
869 -AACCCT
1 AAACCCT
875 AAACCCT
1 AAACCCT
882 AAACCCT
1 AAACCCT
889 AAAACCCT
1 -AAACCCT
897 AAACCCT
1 AAACCCT
904 AAACCCT
1 AAACCCT
911 AAACCCT
1 AAACCCT
918 AAACCCT
1 AAACCCT
925 AAACCCT
1 AAACCCT
932 AAACCCT
1 AAACCCT
939 -AACCCT
1 AAACCCT
945 AAACCCT
1 AAACCCT
952 AAACCCT
1 AAACCCT
959 -AACCCT
1 AAACCCT
965 AAACCCT
1 AAACCCT
972 AAACCCT
1 AAACCCT
979 AAACCCT
1 AAACCCT
986 AAACCCT
1 AAACCCT
993 AAACCCT
1 AAACCCT
1000 -AACCCT
1 AAACCCT
1006 AAACCCT
1 AAACCCT
1013 AAACCCT
1 AAACCCT
1020 -AACCCT
1 AAACCCT
1026 AAACCCT
1 AAACCCT
1033 AAACCCT
1 AAACCCT
1040 -AACCCT
1 AAACCCT
1046 AAACCCT
1 AAACCCT
1053 AAACCCT
1 AAACCCT
1060 AAACCCT
1 AAACCCT
1067 AAACCCT
1 AAACCCT
1074 AAACCCT
1 AAACCCT
1081 AAACCCT
1 AAACCCT
1088 AAACCCT
1 AAACCCT
1095 -AACCCT
1 AAACCCT
1101 -AA-CCT
1 AAACCCT
1106 AAACCCT
1 AAACCCT
1113 AAAACCCT
1 -AAACCCT
1121 AAACCCT
1 AAACCCT
1128 AAACCCT
1 AAACCCT
1135 AAACCCT
1 AAACCCT
1142 AAACCCT
1 AAACCCT
1149 AAACCCT
1 AAACCCT
1156 -AA-CCT
1 AAACCCT
1161 AAACCCT
1 AAACCCT
1168 AAAACCCT
1 -AAACCCT
1176 AAACCCT
1 AAACCCT
1183 AAACCCT
1 AAACCCT
1190 AAACCCT
1 AAACCCT
1197 -AACCCT
1 AAACCCT
1203 AAACCCT
1 AAACCCT
1210 AAACCCT
1 AAACCCT
1217 AAACCCT
1 AAACCCT
1224 AAACCCT
1 AAACCCT
1231 AAACCCT
1 AAACCCT
1238 AAACCCT
1 AAACCCT
1245 AAACCCT
1 AAACCCT
1252 AAACCCT
1 AAACCCT
1259 AAACCCT
1 AAACCCT
1266 AAACCCT
1 AAACCCT
1273 AAACCCT
1 AAACCCT
1280 AAACCCT
1 AAACCCT
1287 AAACCCT
1 AAACCCT
1294 AAACCCT
1 AAACCCT
1301 AAACCCT
1 AAACCCT
1308 AAACCCT
1 AAACCCT
1315 -AACCCT
1 AAACCCT
1321 AAACCCT
1 AAACCCT
1328 AAACCCT
1 AAACCCT
1335 AAACCCT
1 AAACCCT
1342 AAACCCT
1 AAACCCT
1349 AAACCCT
1 AAACCCT
1356 AAACCCT
1 AAACCCT
1363 AAACCCT
1 AAACCCT
1370 AAACCCT
1 AAACCCT
1377 AAACCC-
1 AAACCCT
1383 --ACCCT
1 AAACCCT
1388 AAACCCT
1 AAACCCT
1395 AAACCCT
1 AAACCCT
1402 AAACCCT
1 AAACCCT
1409 AAACCCT
1 AAACCCT
1416 -AACCCT
1 AAACCCT
1422 AAACCCT
1 AAACCCT
1429 -AACCCT
1 AAACCCT
1435 AAACCCT
1 AAACCCT
1442 AAAACCCT
1 -AAACCCT
1450 AAACCCT
1 AAACCCT
1457 -AACCCT
1 AAACCCT
1463 -AACCCT
1 AAACCCT
1469 AAACCCT
1 AAACCCT
1476 AAACCCT
1 AAACCCT
1483 AAACCCT
1 AAACCCT
1490 AAACCCT
1 AAACCCT
1497 AAACCCT
1 AAACCCT
1504 AAACCCT
1 AAACCCT
1511 -AACCCT
1 AAACCCT
1517 AAACCCT
1 AAACCCT
1524 AAACCCT
1 AAACCCT
1531 AAACCCT
1 AAACCCT
1538 AAACCCT
1 AAACCCT
1545 -AACCCT
1 AAACCCT
1551 AAAACCCT
1 -AAACCCT
1559 AAACCCT
1 AAACCCT
1566 AAACCCCT
1 AAA-CCCT
1574 AAACCCT
1 AAACCCT
1581 AAACCCT
1 AAACCCT
1588 AAACCCT
1 AAACCCT
1595 AAACCCT
1 AAACCCT
1602 --ACCCT
1 AAACCCT
1607 AAACCCT
1 AAACCCT
1614 AAACCCT
1 AAACCCT
1621 AAACCCT
1 AAACCCT
1628 AAAACCCT
1 -AAACCCT
1636 AAACCCT
1 AAACCCT
1643 AAACCCT
1 AAACCCT
1650 AAA-CCT
1 AAACCCT
1656 AAACCCT
1 AAACCCT
1663 AAACCCT
1 AAACCCT
1670 -AACCC-
1 AAACCCT
1675 AAACCCT
1 AAACCCT
1682 AAACCCT
1 AAACCCT
1689 AAACCCCT
1 AAA-CCCT
1697 AAACCCT
1 AAACCCT
1704 AAACCCT
1 AAACCCT
1711 AAACCCT
1 AAACCCT
1718 AAACCCT
1 AAACCCT
1725 AAACCCT
1 AAACCCT
1732 AAACCCT
1 AAACCCT
1739 AAACCCT
1 AAACCCT
1746 AAACCCT
1 AAACCCT
1753 AAACCCT
1 AAACCCT
1760 -AACCCT
1 AAACCCT
1766 AAACCCT
1 AAACCCT
1773 -AACCCT
1 AAACCCT
1779 AAACCCT
1 AAACCCT
1786 AAACCCT
1 AAACCCT
1793 AAACCCT
1 AAACCCT
1800 -AACCCT
1 AAACCCT
1806 AAACCCT
1 AAACCCT
1813 AAACCCT
1 AAACCCT
1820 -AACCCT
1 AAACCCT
1826 AAA-CCT
1 AAACCCT
1832 AAACCCT
1 AAACCCT
1839 AAACCCT
1 AAACCCT
1846 -AACCCT
1 AAACCCT
1852 AAACCCT
1 AAACCCT
1859 AAAACCCT
1 -AAACCCT
1867 AAACCCT
1 AAACCCT
1874 AAACCCT
1 AAACCCT
1881 AAACCCT
1 AAACCCT
1888 AAACCCT
1 AAACCCT
1895 AAACCCT
1 AAACCCT
1902 AAACCCT
1 AAACCCT
1909 AAACCCT
1 AAACCCT
1916 AAACCCT
1 AAACCCT
1923 AAACCCT
1 AAACCCT
1930 AAACCCT
1 AAACCCT
1937 AAACCCT
1 AAACCCT
1944 AAACCCT
1 AAACCCT
1951 AAACCCT
1 AAACCCT
1958 AAACCCT
1 AAACCCT
1965 AAACCCT
1 AAACCCT
1972 AAACCCT
1 AAACCCT
1979 AAACCCT
1 AAACCCT
1986 AAACCCT
1 AAACCCT
1993 AAACCCT
1 AAACCCT
2000 AAACCCT
1 AAACCCT
2007 -AACCCT
1 AAACCCT
2013 AAACCCT
1 AAACCCT
2020 AAACCCT
1 AAACCCT
2027 -AACCCT
1 AAACCCT
2033 AAACCCT
1 AAACCCT
2040 AAACCCT
1 AAACCCT
2047 AAACCCT
1 AAACCCT
2054 -AACCCT
1 AAACCCT
2060 AAACCCT
1 AAACCCT
2067 -AA-CCT
1 AAACCCT
2072 -AACCCT
1 AAACCCT
2078 AAACCCT
1 AAACCCT
2085 AAACCCT
1 AAACCCT
2092 AAACCCT
1 AAACCCT
2099 AAACCCT
1 AAACCCT
2106 -AACCCT
1 AAACCCT
2112 AAACCCT
1 AAACCCT
2119 AAACCCT
1 AAACCCT
2126 -AA-CCT
1 AAACCCT
2131 AAACCCT
1 AAACCCT
2138 -AACCCT
1 AAACCCT
2144 AAACCCT
1 AAACCCT
2151 AAACCCT
1 AAACCCT
2158 AAACCCT
1 AAACCCT
2165 AAACCCT
1 AAACCCT
2172 AAACCCT
1 AAACCCT
2179 AAACCCT
1 AAACCCT
2186 AAACCCT
1 AAACCCT
2193 AAACCCT
1 AAACCCT
2200 AAACCCT
1 AAACCCT
2207 AAACCCT
1 AAACCCT
2214 AAACCCT
1 AAACCCT
2221 AAACCCT
1 AAACCCT
2228 AAA-CCT
1 AAACCCT
2234 -AACCCT
1 AAACCCT
2240 AAACCCT
1 AAACCCT
2247 AAACCCCT
1 AAA-CCCT
2255 AAACCCT
1 AAACCCT
2262 AAACCCT
1 AAACCCT
2269 -AACCCT
1 AAACCCT
2275 -AACCCT
1 AAACCCT
2281 -AACCCT
1 AAACCCT
2287 AAACCCT
1 AAACCCT
2294 AAACCCT
1 AAACCCT
2301 AAACCCT
1 AAACCCT
2308 AAACCCT
1 AAACCCT
2315 AAACCCT
1 AAACCCT
2322 AAACCCT
1 AAACCCT
2329 AAACCCT
1 AAACCCT
2336 AAACCCT
1 AAACCCT
2343 -AA-CCT
1 AAACCCT
2348 AAAACCCT
1 -AAACCCT
2356 AAACCCT
1 AAACCCT
2363 -AACCCT
1 AAACCCT
2369 AAACCCT
1 AAACCCT
2376 -AACCCT
1 AAACCCT
2382 AAACCCT
1 AAACCCT
2389 AAACCCT
1 AAACCCT
2396 AAACCCT
1 AAACCCT
2403 AAACCCT
1 AAACCCT
2410 -AACCCT
1 AAACCCT
2416 AAACCCT
1 AAACCCT
2423 AAACCCT
1 AAACCCT
2430 AAA-CCT
1 AAACCCT
2436 AAAACCCT
1 -AAACCCT
2444 AAACCCT
1 AAACCCT
2451 -AACCCT
1 AAACCCT
2457 AAAACCCT
1 -AAACCCT
2465 AAACCCT
1 AAACCCT
2472 AAACCCT
1 AAACCCT
2479 -AA-CCT
1 AAACCCT
2484 AAACCCT
1 AAACCCT
2491 AAA-CCT
1 AAACCCT
2497 AAACCCT
1 AAACCCT
2504 AAACCCT
1 AAACCCT
2511 -AACCCT
1 AAACCCT
2517 AAACCCT
1 AAACCCT
2524 AAACCCT
1 AAACCCT
2531 AAACCCT
1 AAACCCT
2538 AAACCCT
1 AAACCCT
2545 AAACCCT
1 AAACCCT
2552 -AACCCT
1 AAACCCT
2558 AAACCCT
1 AAACCCT
2565 AAACCCT
1 AAACCCT
2572 AAACCCT
1 AAACCCT
2579 AAACCCT
1 AAACCCT
2586 AAACCCT
1 AAACCCT
2593 AAACCCT
1 AAACCCT
2600 -AA-CCT
1 AAACCCT
2605 AAACCCT
1 AAACCCT
2612 AAA-CCT
1 AAACCCT
2618 AAACCCT
1 AAACCCT
2625 AAACCCT
1 AAACCCT
2632 AAACCCT
1 AAACCCT
2639 -AACCCT
1 AAACCCT
2645 AAACCCT
1 AAACCCT
2652 AAACCCT
1 AAACCCT
2659 AAACCCT
1 AAACCCT
2666 AAACCCT
1 AAACCCT
2673 AAACCCT
1 AAACCCT
2680 AAACCCT
1 AAACCCT
2687 AAACCCT
1 AAACCCT
2694 AAACCCT
1 AAACCCT
2701 AAACCCT
1 AAACCCT
2708 AAACCCT
1 AAACCCT
2715 AAA-CCT
1 AAACCCT
2721 AAACCCT
1 AAACCCT
2728 AAACCCT
1 AAACCCT
2735 -AACCCT
1 AAACCCT
2741 AAACCCT
1 AAACCCT
2748 AAACCCT
1 AAACCCT
2755 -AACCCT
1 AAACCCT
2761 AAACCCT
1 AAACCCT
2768 AAACCCT
1 AAACCCT
2775 -AACCCT
1 AAACCCT
2781 AAACCCT
1 AAACCCT
2788 -AACCCT
1 AAACCCT
2794 AAACCCT
1 AAACCCT
2801 -AACCCT
1 AAACCCT
2807 -AACCCT
1 AAACCCT
2813 AAA-CCT
1 AAACCCT
2819 AAACCCT
1 AAACCCT
2826 AAACCCT
1 AAACCCT
2833 -AACCCT
1 AAACCCT
2839 AAACCCT
1 AAACCCT
2846 AAACCCT
1 AAACCCT
2853 AAACCCT
1 AAACCCT
2860 AAACCCT
1 AAACCCT
2867 -AACCCT
1 AAACCCT
2873 AAACCCT
1 AAACCCT
2880 AAACCCT
1 AAACCCT
2887 AAACCCT
1 AAACCCT
2894 AAACCCT
1 AAACCCT
*
2901 AAACCCA
1 AAACCCT
2908 AAACCCT
1 AAACCCT
2915 AAACCCT
1 AAACCCT
2922 AAACCCT
1 AAACCCT
2929 AAACCCT
1 AAACCCT
2936 AAA-CCT
1 AAACCCT
2942 AAACCCT
1 AAACCCT
2949 AAACCCT
1 AAACCCT
2956 AAACCCT
1 AAACCCT
2963 AAACCCT
1 AAACCCT
2970 -AACCCT
1 AAACCCT
2976 AAACCCT
1 AAACCCT
2983 -AACCCT
1 AAACCCT
2989 AAACCCT
1 AAACCCT
2996 -AACCCT
1 AAACCCT
3002 AAACCCT
1 AAACCCT
3009 AAACCCT
1 AAACCCT
3016 AAACCCT
1 AAACCCT
3023 -AACCCT
1 AAACCCT
3029 AAACCCT
1 AAACCCT
3036 AAACCCT
1 AAACCCT
3043 AAACCCT
1 AAACCCT
3050 -AACCCT
1 AAACCCT
3056 AAACCCT
1 AAACCCT
3063 AAACCCT
1 AAACCCT
3070 AAACCCT
1 AAACCCT
3077 AAACCCT
1 AAACCCT
3084 AAACCCT
1 AAACCCT
3091 AAAACCCT
1 -AAACCCT
3099 AAACCCT
1 AAACCCT
3106 AAACCCT
1 AAACCCT
3113 AAACCCT
1 AAACCCT
3120 AAACCCT
1 AAACCCT
3127 AAACCCT
1 AAACCCT
3134 AAAAAACCCT
1 ---AAACCCT
3144 AAACCCT
1 AAACCCT
3151 AAACCCT
1 AAACCCT
3158 AAACCCT
1 AAACCCT
3165 -AACCCT
1 AAACCCT
3171 AAACCCT
1 AAACCCT
3178 AAACCCT
1 AAACCCT
3185 AAA-CCT
1 AAACCCT
3191 -AACCCT
1 AAACCCT
*
3197 AAACCCG
1 AAACCCT
3204 AAACCCT
1 AAACCCT
3211 AAACCCT
1 AAACCCT
3218 AAACCCT
1 AAACCCT
3225 AAACCCT
1 AAACCCT
3232 AAACCCT
1 AAACCCT
3239 AAACCCT
1 AAACCCT
3246 AAACCCT
1 AAACCCT
3253 AAACCCT
1 AAACCCT
3260 AAACCCT
1 AAACCCT
3267 AAACCCT
1 AAACCCT
3274 AAACCCT
1 AAACCCT
3281 AAACCCT
1 AAACCCT
3288 -AACCCT
1 AAACCCT
3294 -AACCCT
1 AAACCCT
3300 AAA-CCT
1 AAACCCT
3306 AAACCCT
1 AAACCCT
3313 AAACCCT
1 AAACCCT
3320 AAACCCT
1 AAACCCT
3327 AAA-CCT
1 AAACCCT
3333 AAACCCT
1 AAACCCT
*
3340 AAAACCT
1 AAACCCT
3347 AAACCCT
1 AAACCCT
3354 AAACCCT
1 AAACCCT
3361 AAACCCT
1 AAACCCT
3368 AAACCCT
1 AAACCCT
3375 -AACCCT
1 AAACCCT
3381 AAACCCT
1 AAACCCT
3388 AAACCCT
1 AAACCCT
3395 AAACCCT
1 AAACCCT
3402 AAACCCT
1 AAACCCT
3409 AAACCCT
1 AAACCCT
3416 AAACCCT
1 AAACCCT
3423 AAACCCT
1 AAACCCT
3430 AAAAACCCT
1 --AAACCCT
3439 AAACCCT
1 AAACCCT
3446 AAACCCT
1 AAACCCT
3453 AAACCCT
1 AAACCCT
3460 AAACCCT
1 AAACCCT
3467 AAACCCT
1 AAACCCT
3474 AAACCCT
1 AAACCCT
3481 AAACCCT
1 AAACCCT
3488 AAACCCT
1 AAACCCT
3495 AAACCCT
1 AAACCCT
3502 AAACCCT
1 AAACCCT
3509 AAACCCT
1 AAACCCT
3516 AAACCCT
1 AAACCCT
3523 AAACCCT
1 AAACCCT
3530 AAACCCT
1 AAACCCT
3537 AAACCCT
1 AAACCCT
3544 -AACCCT
1 AAACCCT
3550 AAA-CCT
1 AAACCCT
3556 AAACCCT
1 AAACCCT
3563 AAACCCT
1 AAACCCT
3570 AAACCCT
1 AAACCCT
3577 AAACCCT
1 AAACCCT
3584 -AACCCT
1 AAACCCT
3590 AAACCCT
1 AAACCCT
3597 AAACCCT
1 AAACCCT
3604 AAACCCT
1 AAACCCT
3611 AAACCCT
1 AAACCCT
3618 AAACCCT
1 AAACCCT
3625 AAACCCT
1 AAACCCT
3632 AAACCCT
1 AAACCCT
3639 AAACCCT
1 AAACCCT
3646 AAACCCT
1 AAACCCT
3653 AAACCCT
1 AAACCCT
3660 AAA-CCT
1 AAACCCT
3666 AAACCCT
1 AAACCCT
3673 AAACCCT
1 AAACCCT
3680 -AACCCT
1 AAACCCT
3686 AAACCCT
1 AAACCCT
3693 AAACCCT
1 AAACCCT
3700 AAACCCT
1 AAACCCT
3707 AAACCCT
1 AAACCCT
3714 AAACCCT
1 AAACCCT
3721 AAACCCT
1 AAACCCT
3728 AAACCCT
1 AAACCCT
3735 -AACCCT
1 AAACCCT
3741 -AACCCT
1 AAACCCT
3747 AAACCCT
1 AAACCCT
3754 AAACCCT
1 AAACCCT
3761 AAACCCT
1 AAACCCT
3768 AAACCCT
1 AAACCCT
3775 AAACCCT
1 AAACCCT
3782 AAACCCT
1 AAACCCT
3789 AAACCCT
1 AAACCCT
3796 AAACCCT
1 AAACCCT
3803 AAACCCT
1 AAACCCT
3810 AAACCCT
1 AAACCCT
3817 AAACCCT
1 AAACCCT
3824 AAACCCT
1 AAACCCT
3831 AAACCCT
1 AAACCCT
3838 AAACCCT
1 AAACCCT
3845 AAACCCT
1 AAACCCT
3852 AAACCCT
1 AAACCCT
3859 AAACCCT
1 AAACCCT
3866 AAACCCT
1 AAACCCT
3873 AAACCCT
1 AAACCCT
3880 AAACCCT
1 AAACCCT
3887 AAACCCT
1 AAACCCT
3894 AAACCCT
1 AAACCCT
3901 AAACCCT
1 AAACCCT
3908 AAACCCT
1 AAACCCT
3915 AAACCCT
1 AAACCCT
3922 AAACCCT
1 AAACCCT
3929 AAACCCT
1 AAACCCT
3936 AAACCCT
1 AAACCCT
3943 AAACCCT
1 AAACCCT
3950 AAACCCT
1 AAACCCT
3957 AAACCCT
1 AAACCCT
3964 AAACCCT
1 AAACCCT
3971 AAACCCT
1 AAACCCT
3978 AAACCCT
1 AAACCCT
3985 AAACCCT
1 AAACCCT
3992 AAACCCT
1 AAACCCT
3999 AAACCCT
1 AAACCCT
4006 AAACCCT
1 AAACCCT
4013 AAACCCT
1 AAACCCT
4020 AAACCCT
1 AAACCCT
4027 AAACCCT
1 AAACCCT
4034 AAACCCT
1 AAACCCT
4041 AAACCCT
1 AAACCCT
4048 AAACCCT
1 AAACCCT
4055 AAACCCT
1 AAACCCT
4062 AAACCCT
1 AAACCCT
4069 AAACCCT
1 AAACCCT
4076 AAACCCT
1 AAACCCT
4083 AAACCCT
1 AAACCCT
4090 AAACCCT
1 AAACCCT
4097 AAACCCT
1 AAACCCT
4104 AAACCCT
1 AAACCCT
4111 AAACCCT
1 AAACCCT
4118 AAACCCT
1 AAACCCT
4125 AAACCCT
1 AAACCCT
4132 AAACCCT
1 AAACCCT
4139 AAACCCT
1 AAACCCT
4146 AAACCCT
1 AAACCCT
4153 AAACCCT
1 AAACCCT
4160 AAACCCT
1 AAACCCT
4167 AAACCCT
1 AAACCCT
4174 AAACCCT
1 AAACCCT
4181 AAACCCT
1 AAACCCT
4188 AAACCCT
1 AAACCCT
4195 AAACCCT
1 AAACCCT
4202 AAACCCT
1 AAACCCT
4209 AAACCCT
1 AAACCCT
4216 AAACCCT
1 AAACCCT
4223 AAACCCT
1 AAACCCT
4230 -AACCCT
1 AAACCCT
4236 AAACCCT
1 AAACCCT
4243 AAACCCT
1 AAACCCT
4250 AAACCCT
1 AAACCCT
4257 AAACCCT
1 AAACCCT
4264 AAACCCT
1 AAACCCT
4271 AAACCCT
1 AAACCCT
4278 AAACCCT
1 AAACCCT
4285 AAACCCT
1 AAACCCT
4292 AAACCCT
1 AAACCCT
4299 AAACCCT
1 AAACCCT
4306 AAACCCT
1 AAACCCT
4313 AAACCCT
1 AAACCCT
4320 AAACCCT
1 AAACCCT
4327 AAACCCT
1 AAACCCT
4334 AAACCCT
1 AAACCCT
4341 AAACCCT
1 AAACCCT
4348 AAACCCT
1 AAACCCT
4355 AAACCCT
1 AAACCCT
4362 -AACCCT
1 AAACCCT
4368 AAACCCT
1 AAACCCT
4375 AAACCCT
1 AAACCCT
4382 AAACCCT
1 AAACCCT
4389 AAACCCT
1 AAACCCT
4396 AAACCCT
1 AAACCCT
4403 AAA-CCT
1 AAACCCT
4409 -AACCCT
1 AAACCCT
4415 AAACCCT
1 AAACCCT
4422 AAACCCT
1 AAACCCT
4429 AAACCCT
1 AAACCCT
4436 AAACCCT
1 AAACCCT
4443 AAACCCT
1 AAACCCT
4450 AAACCCT
1 AAACCCT
4457 AAACCCT
1 AAACCCT
4464 AAACCCT
1 AAACCCT
4471 AAACCCT
1 AAACCCT
4478 AAACCCT
1 AAACCCT
4485 AAACCCT
1 AAACCCT
4492 AAACCCT
1 AAACCCT
4499 AAACCCT
1 AAACCCT
4506 AAACCCT
1 AAACCCT
4513 AAACCCT
1 AAACCCT
4520 AAACCCT
1 AAACCCT
4527 AAACCCT
1 AAACCCT
4534 AAACCCT
1 AAACCCT
4541 AAACCCT
1 AAACCCT
4548 AAACCCT
1 AAACCCT
4555 -AACCCT
1 AAACCCT
4561 AAACCCT
1 AAACCCT
4568 AAACCCT
1 AAACCCT
4575 AAACCCT
1 AAACCCT
4582 AAACCCT
1 AAACCCT
4589 AAACCCT
1 AAACCCT
4596 AAACCCT
1 AAACCCT
4603 -AACCCT
1 AAACCCT
4609 AAACCCT
1 AAACCCT
4616 AAACCCT
1 AAACCCT
4623 AAACCCT
1 AAACCCT
4630 AAACCCT
1 AAACCCT
4637 AAACCCT
1 AAACCCT
4644 AAACCCT
1 AAACCCT
4651 AAACCCT
1 AAACCCT
4658 AAACCCT
1 AAACCCT
4665 AAACCCT
1 AAACCCT
4672 AAACCCT
1 AAACCCT
4679 AAACCCT
1 AAACCCT
4686 AAACCCT
1 AAACCCT
4693 AAACCCT
1 AAACCCT
4700 AAACCCT
1 AAACCCT
4707 -AACCCT
1 AAACCCT
4713 AAACCCT
1 AAACCCT
4720 AAACCCT
1 AAACCCT
4727 AAACCCT
1 AAACCCT
4734 AAACCCT
1 AAACCCT
4741 AAACCCT
1 AAACCCT
4748 AAACCCT
1 AAACCCT
4755 AAACCCT
1 AAACCCT
4762 AAACCCT
1 AAACCCT
4769 AAACCCT
1 AAACCCT
4776 AAACCCT
1 AAACCCT
4783 AAACCCT
1 AAACCCT
4790 AAACCCT
1 AAACCCT
4797 AAACCCT
1 AAACCCT
4804 -AACCCT
1 AAACCCT
4810 AAACCCT
1 AAACCCT
4817 AAACCCT
1 AAACCCT
4824 AAACCCT
1 AAACCCT
4831 AAACCCT
1 AAACCCT
4838 AAACCCT
1 AAACCCT
4845 AAACCCT
1 AAACCCT
4852 AAACCCT
1 AAACCCT
4859 AAACCCT
1 AAACCCT
4866 AAACCCT
1 AAACCCT
4873 AAACCCT
1 AAACCCT
4880 AAACCCT
1 AAACCCT
4887 -AACCCT
1 AAACCCT
4893 AAACCCT
1 AAACCCT
4900 AAACCCT
1 AAACCCT
4907 AAACCCT
1 AAACCCT
4914 -AACCCT
1 AAACCCT
4920 AAACCCT
1 AAACCCT
4927 AAACCCT
1 AAACCCT
4934 AAACCCT
1 AAACCCT
4941 AAACCCT
1 AAACCCT
4948 AAACCCT
1 AAACCCT
4955 AAACCCT
1 AAACCCT
4962 AAACCCT
1 AAACCCT
4969 AAACCCT
1 AAACCCT
4976 AAACCCT
1 AAACCCT
4983 AAACCCT
1 AAACCCT
4990 AAACCCT
1 AAACCCT
4997 AAACCCT
1 AAACCCT
5004 AAACCCT
1 AAACCCT
5011 AAACCCT
1 AAACCCT
5018 AAACCCT
1 AAACCCT
5025 AAACCCT
1 AAACCCT
5032 AAACCCT
1 AAACCCT
5039 AAACCCT
1 AAACCCT
5046 AAACCCT
1 AAACCCT
5053 AAACCCT
1 AAACCCT
5060 AAACCCT
1 AAACCCT
5067 AAACCCT
1 AAACCCT
5074 AAACCCT
1 AAACCCT
5081 AAACCCT
1 AAACCCT
5088 AAACCCT
1 AAACCCT
5095 AAACCCT
1 AAACCCT
5102 AAACCCT
1 AAACCCT
5109 AAACCCT
1 AAACCCT
5116 AAACCCT
1 AAACCCT
5123 AAACCCT
1 AAACCCT
5130 AAACCCT
1 AAACCCT
5137 AAACCCT
1 AAACCCT
5144 AAACCCT
1 AAACCCT
5151 AAACCCT
1 AAACCCT
5158 AAACCCT
1 AAACCCT
5165 AAACCCT
1 AAACCCT
5172 -AACCCT
1 AAACCCT
5178 AAACCCT
1 AAACCCT
5185 AAACCCT
1 AAACCCT
5192 AAACCCT
1 AAACCCT
5199 AAACCCT
1 AAACCCT
5206 AAACCCT
1 AAACCCT
5213 AAACCCT
1 AAACCCT
5220 AAACCCT
1 AAACCCT
5227 AAACCCT
1 AAACCCT
5234 AAACCCT
1 AAACCCT
5241 AAACCCT
1 AAACCCT
5248 AAACCCT
1 AAACCCT
5255 AAACCCT
1 AAACCCT
5262 AAACCCT
1 AAACCCT
5269 AAACCCT
1 AAACCCT
5276 AAACCCT
1 AAACCCT
5283 AAACCCT
1 AAACCCT
5290 AAACCCT
1 AAACCCT
5297 AAACCCT
1 AAACCCT
5304 AAACCCT
1 AAACCCT
5311 AAACCCT
1 AAACCCT
5318 AAACCCT
1 AAACCCT
5325 AAACCCT
1 AAACCCT
5332 AAACCCT
1 AAACCCT
5339 AAACCCT
1 AAACCCT
5346 AAACCCT
1 AAACCCT
5353 AAACCCT
1 AAACCCT
5360 AAACCCT
1 AAACCCT
5367 AAACCCT
1 AAACCCT
5374 AAACCCT
1 AAACCCT
5381 AAACCCT
1 AAACCCT
5388 AAACCCT
1 AAACCCT
5395 AAACCCT
1 AAACCCT
5402 AAACCCT
1 AAACCCT
5409 AAACCCT
1 AAACCCT
5416 AAACCCT
1 AAACCCT
5423 AAACCCT
1 AAACCCT
5430 AAACCCT
1 AAACCCT
5437 AAACCCT
1 AAACCCT
5444 AAACCCT
1 AAACCCT
5451 AAACCCT
1 AAACCCT
5458 AAACCCT
1 AAACCCT
5465 AAACCCT
1 AAACCCT
5472 AAACCCT
1 AAACCCT
5479 AAACCCT
1 AAACCCT
5486 AAACCCT
1 AAACCCT
5493 AAACCCT
1 AAACCCT
5500 AAACCCT
1 AAACCCT
5507 AAACCCT
1 AAACCCT
5514 AAACCCT
1 AAACCCT
5521 AAACCCT
1 AAACCCT
5528 AAACCCT
1 AAACCCT
5535 AAACCCT
1 AAACCCT
5542 AAACCCT
1 AAACCCT
5549 AAACCCT
1 AAACCCT
5556 AAACCCT
1 AAACCCT
5563 AAACCCT
1 AAACCCT
5570 AAACCCT
1 AAACCCT
5577 AAACCCT
1 AAACCCT
5584 AAACCCT
1 AAACCCT
5591 AAACCCT
1 AAACCCT
5598 AAACCCT
1 AAACCCT
5605 AAACCCT
1 AAACCCT
5612 AAACCCT
1 AAACCCT
5619 AAACCCT
1 AAACCCT
5626 AAACCCT
1 AAACCCT
5633 AAACCCT
1 AAACCCT
5640 AAACCCT
1 AAACCCT
5647 AAACCCT
1 AAACCCT
5654 AAACCCT
1 AAACCCT
5661 AAACCCT
1 AAACCCT
5668 AAACCCT
1 AAACCCT
5675 AAACCCT
1 AAACCCT
5682 AAACCCT
1 AAACCCT
5689 AAACCCT
1 AAACCCT
5696 AAACCCT
1 AAACCCT
5703 AAACCCT
1 AAACCCT
5710 AAACCCT
1 AAACCCT
5717 AAACCCT
1 AAACCCT
5724 AAACCCT
1 AAACCCT
5731 AAACCCT
1 AAACCCT
5738 AAACCCT
1 AAACCCT
5745 AAACCCT
1 AAACCCT
5752 AAACCCT
1 AAACCCT
5759 AAACCCT
1 AAACCCT
5766 AAACCCT
1 AAACCCT
5773 AAACCCT
1 AAACCCT
5780 AAACCCT
1 AAACCCT
5787 AAACCCT
1 AAACCCT
5794 AAACCCT
1 AAACCCT
5801 AAACCCT
1 AAACCCT
5808 AAACCCT
1 AAACCCT
5815 AAACCCT
1 AAACCCT
5822 AAACCCT
1 AAACCCT
5829 AAACCCT
1 AAACCCT
5836 AAACCCT
1 AAACCCT
5843 AAACCCT
1 AAACCCT
5850 AAACCCT
1 AAACCCT
5857 AAACCCT
1 AAACCCT
5864 AAACCCT
1 AAACCCT
5871 AAACCCT
1 AAACCCT
5878 AAACCCT
1 AAACCCT
5885 AAACCCT
1 AAACCCT
5892 AAACCCT
1 AAACCCT
5899 AAACCCT
1 AAACCCT
5906 AAACCCT
1 AAACCCT
5913 AAACCCT
1 AAACCCT
5920 AAACCCT
1 AAACCCT
5927 AAACCCT
1 AAACCCT
5934 AAACCCT
1 AAACCCT
5941 AAACCCT
1 AAACCCT
5948 AAACCCT
1 AAACCCT
5955 AAACCCT
1 AAACCCT
5962 AAACCCT
1 AAACCCT
5969 AAACCCT
1 AAACCCT
5976 AAACCCT
1 AAACCCT
5983 AAACCCT
1 AAACCCT
5990 AAACCCT
1 AAACCCT
5997 AAACCCT
1 AAACCCT
6004 AAACCCT
1 AAACCCT
6011 AAACCCT
1 AAACCCT
6018 AAACCCT
1 AAACCCT
6025 AAACCCT
1 AAACCCT
6032 AAACCCT
1 AAACCCT
6039 AAACCCT
1 AAACCCT
6046 AAACCCT
1 AAACCCT
6053 AAACCCT
1 AAACCCT
6060 AAACCCT
1 AAACCCT
6067 AAACCCT
1 AAACCCT
6074 AAACCCT
1 AAACCCT
6081 AAACCCT
1 AAACCCT
6088 AAACCCT
1 AAACCCT
6095 AAACCCT
1 AAACCCT
6102 AAACCCT
1 AAACCCT
6109 AAACCCT
1 AAACCCT
6116 AAACCCT
1 AAACCCT
6123 AAACCCT
1 AAACCCT
6130 AAACCCT
1 AAACCCT
6137 AAACCCT
1 AAACCCT
6144 AAACCCT
1 AAACCCT
6151 AAACCCT
1 AAACCCT
6158 AAACCCT
1 AAACCCT
6165 AAACCCT
1 AAACCCT
6172 -AACCCT
1 AAACCCT
6178 AAACCCT
1 AAACCCT
6185 AAACCCT
1 AAACCCT
6192 AAACCCT
1 AAACCCT
6199 AAACCCT
1 AAACCCT
6206 AAACCCT
1 AAACCCT
6213 AAACCCT
1 AAACCCT
6220 AAACCCT
1 AAACCCT
6227 AAACCCT
1 AAACCCT
6234 AAACCCT
1 AAACCCT
6241 AAACCCT
1 AAACCCT
6248 AAACCCT
1 AAACCCT
6255 AAACCCT
1 AAACCCT
6262 AAACCCT
1 AAACCCT
6269 AAACCCT
1 AAACCCT
6276 AAACCCT
1 AAACCCT
6283 -AACCCT
1 AAACCCT
6289 AAACCCT
1 AAACCCT
6296 AAACCCT
1 AAACCCT
6303 AAACCCT
1 AAACCCT
6310 AAACCCT
1 AAACCCT
6317 AAACCCT
1 AAACCCT
6324 AAACCCT
1 AAACCCT
6331 AAACCCT
1 AAACCCT
6338 AAACCCT
1 AAACCCT
6345 AAACCCT
1 AAACCCT
6352 AAACCCT
1 AAACCCT
6359 AAACCCT
1 AAACCCT
6366 AAACCCT
1 AAACCCT
6373 AAACCCT
1 AAACCCT
6380 AAACCCT
1 AAACCCT
6387 AAACCCT
1 AAACCCT
6394 AAACCCT
1 AAACCCT
6401 AAACCCT
1 AAACCCT
6408 AAACCCT
1 AAACCCT
6415 AAACCCT
1 AAACCCT
6422 AAACCCT
1 AAACCCT
6429 AAACCCT
1 AAACCCT
6436 AAACCCT
1 AAACCCT
6443 AAACCCT
1 AAACCCT
6450 -AACCCT
1 AAACCCT
6456 AAACCCT
1 AAACCCT
6463 AAACCCT
1 AAACCCT
6470 AAACCCT
1 AAACCCT
6477 AAACCCT
1 AAACCCT
6484 AAACCCT
1 AAACCCT
6491 AAACCCT
1 AAACCCT
6498 AAACCCT
1 AAACCCT
6505 AAACCCT
1 AAACCCT
6512 AAACCCT
1 AAACCCT
6519 AAACCCT
1 AAACCCT
6526 AAACCCT
1 AAACCCT
6533 AAACCCT
1 AAACCCT
6540 AAACCCT
1 AAACCCT
6547 AAACCCT
1 AAACCCT
6554 AAACCCT
1 AAACCCT
6561 AAACCCT
1 AAACCCT
6568 AAACCCT
1 AAACCCT
6575 AAACCCT
1 AAACCCT
6582 AAACCCT
1 AAACCCT
6589 AAACCCT
1 AAACCCT
6596 AAACCCT
1 AAACCCT
6603 AAACCCT
1 AAACCCT
6610 AAACCCT
1 AAACCCT
6617 AAACCCT
1 AAACCCT
6624 AAACCCT
1 AAACCCT
6631 AAACCCT
1 AAACCCT
6638 AAACCCT
1 AAACCCT
6645 AAACCCT
1 AAACCCT
6652 AAACCCT
1 AAACCCT
6659 AAACCCT
1 AAACCCT
6666 AAACCCT
1 AAACCCT
6673 AAACCCT
1 AAACCCT
6680 AAACCCT
1 AAACCCT
6687 AAACCCT
1 AAACCCT
6694 AAACCCT
1 AAACCCT
6701 AAACCCT
1 AAACCCT
6708 AAACCCT
1 AAACCCT
6715 AAACCCT
1 AAACCCT
6722 AAACCCT
1 AAACCCT
6729 AAACCCT
1 AAACCCT
6736 AAACCCT
1 AAACCCT
6743 AAACCCT
1 AAACCCT
6750 AAACCCT
1 AAACCCT
6757 AAACCCT
1 AAACCCT
6764 AAACCCT
1 AAACCCT
6771 AAACCCT
1 AAACCCT
6778 AAACCCT
1 AAACCCT
6785 AAACCCT
1 AAACCCT
6792 AAACCCT
1 AAACCCT
6799 AAACCCT
1 AAACCCT
6806 AAACCCT
1 AAACCCT
6813 AAACCCT
1 AAACCCT
6820 AAACCCT
1 AAACCCT
6827 AAACCCT
1 AAACCCT
6834 AAACCCT
1 AAACCCT
6841 AAACCCT
1 AAACCCT
6848 AAACCCT
1 AAACCCT
6855 AAACCCT
1 AAACCCT
6862 AAACCCT
1 AAACCCT
6869 AAACCCT
1 AAACCCT
6876 AAACCCT
1 AAACCCT
6883 AAACCCT
1 AAACCCT
6890 AAACCCT
1 AAACCCT
6897 AAACCCT
1 AAACCCT
6904 AAACCCT
1 AAACCCT
6911 AAACCCT
1 AAACCCT
6918 AAACCCT
1 AAACCCT
6925 AAACCCT
1 AAACCCT
6932 AAACCCT
1 AAACCCT
6939 AAACCCT
1 AAACCCT
6946 AAACCCT
1 AAACCCT
6953 AAACCCT
1 AAACCCT
6960 AAACCCT
1 AAACCCT
6967 AAACCCT
1 AAACCCT
6974 AAACCCCCCT
1 AAA---CCCT
6984 AAACCCT
1 AAACCCT
*
6991 -AGCCCT
1 AAACCCT
6997 AAACCCT
1 AAACCCT
7004 AAACCCT
1 AAACCCT
*
7011 AAACCCCCG
1 AAA--CCCT
** *
7020 AGCCCCCC
1 A-AACCCT
*** *
7028 CCCCCCC
1 AAACCCT
* * *
7035 GAGCCCC
1 AAACCCT
* * *
7042 GAGCCCC
1 AAACCCT
* *
7049 GAGCCC-
1 AAACCCT
* * *
7055 GAGCCCC
1 AAACCCT
* * *
7062 GAGCCCC
1 AAACCCT
* * *
7069 GAGCCCC
1 AAACCCT
* * *
7076 GAGCCCC
1 AAACCCT
* * *
7083 GAGCCCC
1 AAACCCT
* * *
7090 GAGCCCC
1 AAACCCT
* * *
7097 GAGCCCC
1 AAACCCT
* * *
7104 GAGCCCC
1 AAACCCT
* * *
7111 GAGCCCC
1 AAACCCT
* * *
7118 GAGCCCC
1 AAACCCT
* * *
7125 GAGCCCC
1 AAACCCT
* * *
7132 GAGCCCC
1 AAACCCT
* * *
7139 GAGCCCC
1 AAACCCT
* * *
7146 GAGCCCC
1 AAACCCT
* *
7153 GAGCCC-
1 AAACCCT
** *
7159 CGACCCC
1 AAACCCT
** *
7166 CGACCCC
1 AAACCCT
* * *
7173 GACCCCC
1 AAACCCT
* * *
7180 GACCCCC
1 AAACCCT
* * *
7187 GACCCCG
1 AAACCCT
** *
7194 ACCCCCG
1 AAACCCT
** *
7201 ACCCCCG
1 AAACCCT
** *
7208 ACCCCCG
1 AAACCCT
** *
7215 ACCCCCC
1 AAACCCT
* * *
7222 GACCCCC
1 AAACCCT
* * *
7229 GACCCCG
1 AAACCCT
* *
7236 AACCCCG
1 AAACCCT
* *
7243 AACCCCG
1 AAACCCT
* *
7250 AACCCCG
1 AAACCCT
* *
7257 AACCCCG
1 AAACCCT
* *
7264 AACCCCG
1 AAACCCT
* *
7271 AACCCCCCCG
1 AA---ACCCT
*
7281 AACCCCT
1 AAACCCT
*
7288 AAACCCC
1 AAACCCT
*
7295 GAACCCT
1 AAACCCT
7302 AAACCCT
1 AAACCCT
7309 -AACCCT
1 AAACCCT
7315 AAACCCT
1 AAACCCT
7322 AAACCCT
1 AAACCCT
7329 AAACCCT
1 AAACCCT
7336 AAACCCT
1 AAACCCT
7343 AAACCCT
1 AAACCCT
7350 AAACCCT
1 AAACCCT
7357 AAACCCT
1 AAACCCT
7364 AAACCCT
1 AAACCCT
7371 AAACCCT
1 AAACCCT
7378 AAACCCT
1 AAACCCT
7385 AAACCCT
1 AAACCCT
7392 AAACCCT
1 AAACCCT
7399 AAACCCT
1 AAACCCT
7406 AAACCCT
1 AAACCCT
7413 AAACCCT
1 AAACCCT
7420 AAACCCT
1 AAACCCT
7427 AAACCCT
1 AAACCCT
7434 AAACCCT
1 AAACCCT
7441 AAACCCT
1 AAACCCT
7448 AAACCCT
1 AAACCCT
7455 AAACCCT
1 AAACCCT
7462 AAACCCT
1 AAACCCT
7469 AAACCCT
1 AAACCCT
7476 AAACCCT
1 AAACCCT
7483 AAACCCT
1 AAACCCT
7490 AAACCCT
1 AAACCCT
7497 AAACCCT
1 AAACCCT
7504 AAACCCT
1 AAACCCT
7511 AAACCCT
1 AAACCCT
7518 AAACCCT
1 AAACCCT
7525 AAACCCT
1 AAACCCT
7532 AAACCCT
1 AAACCCT
7539 AAACCCT
1 AAACCCT
7546 AAACCCT
1 AAACCCT
7553 AAACCCT
1 AAACCCT
7560 AAACCCT
1 AAACCCT
7567 AAACCCT
1 AAACCCT
7574 AAACCCT
1 AAACCCT
7581 AAACCCT
1 AAACCCT
7588 AAACCCT
1 AAACCCT
7595 AAACCCT
1 AAACCCT
7602 AAACCCT
1 AAACCCT
7609 AAACCCT
1 AAACCCT
7616 AAACCCT
1 AAACCCT
7623 AAACCCT
1 AAACCCT
7630 AAACCCT
1 AAACCCT
7637 AAACCCT
1 AAACCCT
7644 AAACCCT
1 AAACCCT
7651 AAACCCT
1 AAACCCT
7658 AAACCCT
1 AAACCCT
7665 AAACCCT
1 AAACCCT
7672 AAACCCT
1 AAACCCT
7679 AAACCCT
1 AAACCCT
7686 AAACCCT
1 AAACCCT
7693 AAACCCT
1 AAACCCT
7700 AAACCCT
1 AAACCCT
7707 AAACCCT
1 AAACCCT
7714 AAACCCT
1 AAACCCT
7721 AAACCCT
1 AAACCCT
7728 AAACCCT
1 AAACCCT
7735 AAACCCT
1 AAACCCT
7742 AAACCCT
1 AAACCCT
7749 AAACCCT
1 AAACCCT
7756 AAACCCT
1 AAACCCT
7763 AAACCCT
1 AAACCCT
7770 AAACCCT
1 AAACCCT
7777 AAACCCT
1 AAACCCT
7784 AAACCCT
1 AAACCCT
7791 AAACCCT
1 AAACCCT
7798 AAACCCT
1 AAACCCT
7805 AAACCCT
1 AAACCCT
7812 AAACCCT
1 AAACCCT
7819 AAACCCT
1 AAACCCT
7826 AAACCCT
1 AAACCCT
7833 AAACCCT
1 AAACCCT
7840 AAACCCT
1 AAACCCT
7847 AAACCCT
1 AAACCCT
7854 AAACCCT
1 AAACCCT
7861 AAACCCT
1 AAACCCT
7868 AAACCCT
1 AAACCCT
7875 AAACCCT
1 AAACCCT
7882 AAACCCT
1 AAACCCT
7889 AAACCCT
1 AAACCCT
7896 AAACCCT
1 AAACCCT
7903 AAACCC
1 AAACCC
7909 CAGGCCCCAG
Statistics
Matches: 7702, Mismatches: 36, Indels: 326
0.96 0.00 0.04
Matches are distributed among these distances:
4 4 0.00
5 39 0.01
6 704 0.09
7 6805 0.88
8 111 0.01
9 11 0.00
10 28 0.00
ACGTcount: A:0.41, C:0.44, G:0.01, T:0.14
Consensus pattern (7 bp):
AAACCCT
Found at i:7916 original size:7 final size:7
Alignment explanation
Indices: 7906--8062 Score: 314
Period size: 7 Copynumber: 22.4 Consensus size: 7
7896 AAACCCTAAA
7906 CCCCAGG
1 CCCCAGG
7913 CCCCAGG
1 CCCCAGG
7920 CCCCAGG
1 CCCCAGG
7927 CCCCAGG
1 CCCCAGG
7934 CCCCAGG
1 CCCCAGG
7941 CCCCAGG
1 CCCCAGG
7948 CCCCAGG
1 CCCCAGG
7955 CCCCAGG
1 CCCCAGG
7962 CCCCAGG
1 CCCCAGG
7969 CCCCAGG
1 CCCCAGG
7976 CCCCAGG
1 CCCCAGG
7983 CCCCAGG
1 CCCCAGG
7990 CCCCAGG
1 CCCCAGG
7997 CCCCAGG
1 CCCCAGG
8004 CCCCAGG
1 CCCCAGG
8011 CCCCAGG
1 CCCCAGG
8018 CCCCAGG
1 CCCCAGG
8025 CCCCAGG
1 CCCCAGG
8032 CCCCAGG
1 CCCCAGG
8039 CCCCAGG
1 CCCCAGG
8046 CCCCAGG
1 CCCCAGG
8053 CCCCAGG
1 CCCCAGG
8060 CCC
1 CCC
8063 TAACCTAAAC
Statistics
Matches: 150, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 150 1.00
ACGTcount: A:0.14, C:0.58, G:0.28, T:0.00
Consensus pattern (7 bp):
CCCCAGG
Found at i:8077 original size:12 final size:12
Alignment explanation
Indices: 8060--8112 Score: 70
Period size: 12 Copynumber: 4.2 Consensus size: 12
8050 AGGCCCCAGG
8060 CCCTAACCTAAA
1 CCCTAACCTAAA
*
8072 CCCTAACCTAGA
1 CCCTAACCTAAA
*
8084 CCCTAACCTAGA
1 CCCTAACCTAAA
8096 CCCTAAACCCTAAA
1 CCCT-AA-CCTAAA
8110 CCC
1 CCC
8113 CGGACCCCGG
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
12 27 0.73
13 2 0.05
14 8 0.22
ACGTcount: A:0.36, C:0.45, G:0.04, T:0.15
Consensus pattern (12 bp):
CCCTAACCTAAA
Found at i:8119 original size:7 final size:7
Alignment explanation
Indices: 8109--8182 Score: 148
Period size: 7 Copynumber: 10.6 Consensus size: 7
8099 TAAACCCTAA
8109 ACCCCGG
1 ACCCCGG
8116 ACCCCGG
1 ACCCCGG
8123 ACCCCGG
1 ACCCCGG
8130 ACCCCGG
1 ACCCCGG
8137 ACCCCGG
1 ACCCCGG
8144 ACCCCGG
1 ACCCCGG
8151 ACCCCGG
1 ACCCCGG
8158 ACCCCGG
1 ACCCCGG
8165 ACCCCGG
1 ACCCCGG
8172 ACCCCGG
1 ACCCCGG
8179 ACCC
1 ACCC
8183 TGAACCCTAA
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 67 1.00
ACGTcount: A:0.15, C:0.58, G:0.27, T:0.00
Consensus pattern (7 bp):
ACCCCGG
Found at i:8126 original size:21 final size:21
Alignment explanation
Indices: 8102--8198 Score: 104
Period size: 21 Copynumber: 4.6 Consensus size: 21
8092 TAGACCCTAA
*
8102 ACCCTAAACCCCGGACCCCGG
1 ACCCCAAACCCCGGACCCCGG
**
8123 ACCCCGGACCCCGGACCCCGG
1 ACCCCAAACCCCGGACCCCGG
**
8144 ACCCCGGACCCCGGACCCCGG
1 ACCCCAAACCCCGGACCCCGG
** * *
8165 ACCCCGGACCCCGGACCCTGA
1 ACCCCAAACCCCGGACCCCGG
*
8186 ACCCTAAACCCCG
1 ACCCCAAACCCCG
8199 AGCCCCGAGC
Statistics
Matches: 68, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 68 1.00
ACGTcount: A:0.20, C:0.55, G:0.23, T:0.03
Consensus pattern (21 bp):
ACCCCAAACCCCGGACCCCGG
Found at i:9930 original size:3 final size:3
Alignment explanation
Indices: 9922--9972 Score: 57
Period size: 3 Copynumber: 17.0 Consensus size: 3
9912 ACTTGTTTGG
* * * * *
9922 ATC ATC ATC ATC ATC ATC ATC ATC GTC GTC ATC TTC ATC GTC ATC TTC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
9970 ATC
1 ATC
9973 GTCAGCTTCA
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.24, C:0.33, G:0.06, T:0.37
Consensus pattern (3 bp):
ATC
Found at i:9973 original size:12 final size:12
Alignment explanation
Indices: 9926--9989 Score: 74
Period size: 12 Copynumber: 5.3 Consensus size: 12
9916 GTTTGGATCA
* *
9926 TCATCATCATCA
1 TCATCTTCATCG
* *
9938 TCATCATCGTCG
1 TCATCTTCATCG
9950 TCATCTTCATCG
1 TCATCTTCATCG
9962 TCATCTTCATCG
1 TCATCTTCATCG
* *
9974 TCAGCTTCATCT
1 TCATCTTCATCG
9986 TCAT
1 TCAT
9990 TGACCGCTTG
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 45 1.00
ACGTcount: A:0.20, C:0.33, G:0.08, T:0.39
Consensus pattern (12 bp):
TCATCTTCATCG
Found at i:9987 original size:6 final size:6
Alignment explanation
Indices: 9926--9989 Score: 56
Period size: 6 Copynumber: 10.7 Consensus size: 6
9916 GTTTGGATCA
* * * * * * *
9926 TCATCA TCATCA TCATCA TCGTCG TCATCT TCATCG TCATCT TCATCG
1 TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT
*
9974 TCAGCT TCATCT TCAT
1 TCATCT TCATCT TCAT
9990 TGACCGCTTG
Statistics
Matches: 48, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
6 48 1.00
ACGTcount: A:0.20, C:0.33, G:0.08, T:0.39
Consensus pattern (6 bp):
TCATCT
Found at i:11809 original size:200 final size:200
Alignment explanation
Indices: 11485--12605 Score: 2035
Period size: 200 Copynumber: 5.6 Consensus size: 200
11475 AACATTAAAC
11485 AGTGTCGATACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGA
1 AGTGTCGATACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGA
* *
11550 AAAATTACCTAATACATTATACTTATGGGTTTAGATGTTTATGGGATCGACACTTTTTATATATG
66 AAAATTACCTATTACATTATACTTATGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATG
* * *
11615 GATCGACACTTTATGGTTGCACCCTGTTTTCCATTCAATCTGGACCAAAAATATCGACACAAACT
131 GATCGACACTTTATTGTTGCACCCTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAACT
11680 ACAAA
196 ACAAA
* *
11685 AGTGTCGACACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTATCGGTTAGATTGA
1 AGTGTCGATACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGA
11750 AAAATTACCTATTACATTATACTTATGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATG
66 AAAATTACCTATTACATTATACTTATGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATG
*
11815 GATCGACACTTTATTGTTGCACCCTATTTGCCATTCATTCTGGACCAAAAATATCGACACAAACT
131 GATCGACACTTTATTGTTGCACCCTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAACT
*
11880 AAAAA
196 ACAAA
*
11885 AGTGTCGAAACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGA
1 AGTGTCGATACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGA
* *
11950 AAAATTACCTATTACATTATACTTATGGGTTTCGATGTTTATCGGATCGACACTTATTATATATG
66 AAAATTACCTATTACATTATACTTATGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATG
12015 GATCGACACTTTATTGTTGCACCCTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAACT
131 GATCGACACTTTATTGTTGCACCCTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAACT
12080 ACAAA
196 ACAAA
*
12085 AGTGTCGATACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTATACCGGTTAGATTGA
1 AGTGTCGATACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGA
*
12150 AAAATTACCTATTACATTATACTTATGGGTTTCGATGTTTATCGGATCGACACTTTTTATATATG
66 AAAATTACCTATTACATTATACTTATGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATG
12215 GATCGACACTTTATTGTTGCACCCTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAACT
131 GATCGACACTTTATTGTTGCACCCTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAACT
12280 ACAAA
196 ACAAA
*
12285 AGTGTCGATACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGATTAGATTGA
1 AGTGTCGATACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGA
* * *
12350 AAAATTACCTATTACATTATACTTTTGGGTTTCGATGTTTATGGGATGGACACTCTTTATATATG
66 AAAATTACCTATTACATTATACTTATGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATG
*
12415 GATCGACACTTTATGGTTGCACCCTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAACT
131 GATCGACACTTTATTGTTGCACCCTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAACT
12480 ACAAA
196 ACAAA
* *
12485 AGTGTCGATACATTATTTAGACTTATTCTCTCATAAAACCGGTATACTTGTACCGATTAGATTGA
1 AGTGTCGATACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGA
* *
12550 AAAATTACATATTACATTATACTTTTGGGTTTCGATGTTTATGGGATCGACACTTT
66 AAAATTACCTATTACATTATACTTATGGGTTTCGATGTTTATGGGATCGACACTTT
12606 ATGATTGCAC
Statistics
Matches: 892, Mismatches: 29, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
200 892 1.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.36
Consensus pattern (200 bp):
AGTGTCGATACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGA
AAAATTACCTATTACATTATACTTATGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATG
GATCGACACTTTATTGTTGCACCCTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAACT
ACAAA
Found at i:17170 original size:28 final size:28
Alignment explanation
Indices: 17132--17198 Score: 125
Period size: 28 Copynumber: 2.4 Consensus size: 28
17122 TTAGTCTTTA
*
17132 AACCCTAAATCTTAAGCTATAAATCATT
1 AACCCTAAATCTTAAGCTAAAAATCATT
17160 AACCCTAAATCTTAAGCTAAAAATCATT
1 AACCCTAAATCTTAAGCTAAAAATCATT
17188 AACCCTAAATC
1 AACCCTAAATC
17199 ATGAACCTTA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.45, C:0.24, G:0.03, T:0.28
Consensus pattern (28 bp):
AACCCTAAATCTTAAGCTAAAAATCATT
Found at i:17197 original size:14 final size:14
Alignment explanation
Indices: 17132--17205 Score: 64
Period size: 14 Copynumber: 5.3 Consensus size: 14
17122 TTAGTCTTTA
17132 AACCCTAAATC-TT
1 AACCCTAAATCATT
**
17145 AAGCTATAAATCATT
1 AA-CCCTAAATCATT
17160 AACCCTAAATC-TT
1 AACCCTAAATCATT
*
17173 AA-GCTAAAAATCATT
1 AACCCT--AAATCATT
*
17188 AACCCTAAATCATG
1 AACCCTAAATCATT
17202 AACC
1 AACC
17206 TTAACTCCTA
Statistics
Matches: 48, Mismatches: 7, Indels: 11
0.73 0.11 0.17
Matches are distributed among these distances:
12 2 0.04
13 6 0.12
14 30 0.62
15 8 0.17
16 2 0.04
ACGTcount: A:0.45, C:0.24, G:0.04, T:0.27
Consensus pattern (14 bp):
AACCCTAAATCATT
Found at i:17224 original size:28 final size:29
Alignment explanation
Indices: 17193--17273 Score: 87
Period size: 28 Copynumber: 2.9 Consensus size: 29
17183 TCATTAACCC
*
17193 TAAATCATGAACCTT-AACTCCTAAATCA
1 TAAACCATGAACCTTAAACTCCTAAATCA
* * * *
17221 TAAACCTTAAACCTTAAACT-TTAAATCC
1 TAAACCATGAACCTTAAACTCCTAAATCA
*
17249 TAAACCATGAACTTTAAAC-CCTAAA
1 TAAACCATGAACCTTAAACTCCTAAA
17274 CCTTAAGCCT
Statistics
Matches: 42, Mismatches: 9, Indels: 4
0.76 0.16 0.07
Matches are distributed among these distances:
28 38 0.90
29 4 0.10
ACGTcount: A:0.44, C:0.25, G:0.02, T:0.28
Consensus pattern (29 bp):
TAAACCATGAACCTTAAACTCCTAAATCA
Found at i:17231 original size:7 final size:7
Alignment explanation
Indices: 17221--17289 Score: 68
Period size: 7 Copynumber: 9.9 Consensus size: 7
17211 TCCTAAATCA
17221 TAAACCT
1 TAAACCT
17228 TAAACCT
1 TAAACCT
*
17235 TAAACTT
1 TAAACCT
17242 TAAATCC-
1 TAAA-CCT
*
17249 TAAACCA
1 TAAACCT
* *
17256 TGAACTT
1 TAAACCT
*
17263 TAAACCC
1 TAAACCT
17270 TAAACCT
1 TAAACCT
*
17277 TAAGCCT
1 TAAACCT
17284 TAAACC
1 TAAACC
17290 ATACATTATA
Statistics
Matches: 49, Mismatches: 11, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
6 2 0.04
7 46 0.94
8 1 0.02
ACGTcount: A:0.42, C:0.28, G:0.03, T:0.28
Consensus pattern (7 bp):
TAAACCT
Found at i:17238 original size:21 final size:20
Alignment explanation
Indices: 17186--17230 Score: 72
Period size: 21 Copynumber: 2.2 Consensus size: 20
17176 CTAAAAATCA
*
17186 TTAACCCTAAATCATGAACC
1 TTAACCCTAAATCATAAACC
17206 TTAACTCCTAAATCATAAACC
1 TTAAC-CCTAAATCATAAACC
17227 TTAA
1 TTAA
17231 ACCTTAAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 5 0.22
21 18 0.78
ACGTcount: A:0.42, C:0.27, G:0.02, T:0.29
Consensus pattern (20 bp):
TTAACCCTAAATCATAAACC
Found at i:17245 original size:21 final size:20
Alignment explanation
Indices: 17221--17289 Score: 75
Period size: 21 Copynumber: 3.3 Consensus size: 20
17211 TCCTAAATCA
17221 TAAACCTTAAACCTTAAACTT
1 TAAACC-TAAACCTTAAACTT
* *
17242 TAAATCCTAAACCATGAACTT
1 TAAA-CCTAAACCTTAAACTT
* *
17263 TAAACCCTAAACCTTAAGCCT
1 TAAA-CCTAAACCTTAAACTT
17284 TAAACC
1 TAAACC
17290 ATACATTATA
Statistics
Matches: 40, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
20 2 0.05
21 36 0.90
22 2 0.05
ACGTcount: A:0.42, C:0.28, G:0.03, T:0.28
Consensus pattern (20 bp):
TAAACCTAAACCTTAAACTT
Found at i:17250 original size:35 final size:35
Alignment explanation
Indices: 17202--17292 Score: 103
Period size: 35 Copynumber: 2.6 Consensus size: 35
17192 CTAAATCATG
* * *
17202 AACCTTAACTCCTAAATCATAAACCTTAAACCTTA
1 AACCTTAAATCCTAAACCATAAACCTTAAACCCTA
* * *
17237 AACTTTAAATCCTAAACCATGAACTTTAAACCCTA
1 AACCTTAAATCCTAAACCATAAACCTTAAACCCTA
*
17272 AACCTT-AAGCCTTAAACCATA
1 AACCTTAAATCC-TAAACCATA
17293 CATTATAAGC
Statistics
Matches: 46, Mismatches: 9, Indels: 2
0.81 0.16 0.04
Matches are distributed among these distances:
34 4 0.09
35 42 0.91
ACGTcount: A:0.43, C:0.27, G:0.02, T:0.27
Consensus pattern (35 bp):
AACCTTAAATCCTAAACCATAAACCTTAAACCCTA
Found at i:17366 original size:22 final size:22
Alignment explanation
Indices: 17325--17373 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 22
17315 CCTTAAACCT
* * *
17325 TAAACCATGAATCTTGAACACC
1 TAAACCATGAAGCATAAACACC
17347 TAAACCATGAAGCATAAACACC
1 TAAACCATGAAGCATAAACACC
17369 -AAACC
1 TAAACC
17374 CTAAATAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
21 5 0.21
22 19 0.79
ACGTcount: A:0.47, C:0.29, G:0.08, T:0.16
Consensus pattern (22 bp):
TAAACCATGAAGCATAAACACC
Found at i:17426 original size:7 final size:7
Alignment explanation
Indices: 17416--17594 Score: 76
Period size: 7 Copynumber: 25.7 Consensus size: 7
17406 CACTAAATAC
17416 TAAACCT
1 TAAACCT
**
17423 TAAATAT
1 TAAACCT
* *
17430 CAAACCA
1 TAAACCT
*
17437 TAAACCC
1 TAAACCT
*
17444 TAAGCCT
1 TAAACCT
* *
17451 TAATCTT
1 TAAACCT
*
17458 TGAACCT
1 TAAACCT
*
17465 TAAACCC
1 TAAACCT
*
17472 TAAAACT
1 TAAACCT
*
17479 TGAACCCT
1 T-AAACCT
17487 T-AACCT
1 TAAACCT
* *
17493 TTAAGCT
1 TAAACCT
*
17500 TGAACCT
1 TAAACCT
*
17507 TGAACCT
1 TAAACCT
* *
17514 TAGACCC
1 TAAACCT
17521 TAAA-CT
1 TAAACCT
*
17527 TCAAAACT
1 T-AAACCT
*
17535 AAAACCT
1 TAAACCT
17542 TAAACCT
1 TAAACCT
* *
17549 CAAATCT
1 TAAACCT
17556 TAAACC-
1 TAAACCT
*
17562 TAAATCT
1 TAAACCT
*
17569 TAGACCT
1 TAAACCT
* *
17576 CAAACCC
1 TAAACCT
*
17583 TAAACCC
1 TAAACCT
17590 TAAAC
1 TAAAC
17595 TCTAAACATG
Statistics
Matches: 123, Mismatches: 44, Indels: 10
0.69 0.25 0.06
Matches are distributed among these distances:
6 12 0.10
7 104 0.85
8 7 0.06
ACGTcount: A:0.41, C:0.29, G:0.04, T:0.26
Consensus pattern (7 bp):
TAAACCT
Found at i:17568 original size:13 final size:14
Alignment explanation
Indices: 17540--17579 Score: 64
Period size: 13 Copynumber: 2.9 Consensus size: 14
17530 AAACTAAAAC
17540 CTTAAACCTCAAAT
1 CTTAAACCTCAAAT
17554 CTTAAACCT-AAAT
1 CTTAAACCTCAAAT
*
17567 CTTAGACCTCAAA
1 CTTAAACCTCAAA
17580 CCCTAAACCC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
13 12 0.50
14 12 0.50
ACGTcount: A:0.42, C:0.28, G:0.03, T:0.28
Consensus pattern (14 bp):
CTTAAACCTCAAAT
Found at i:17570 original size:27 final size:27
Alignment explanation
Indices: 17540--17601 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
17530 AAACTAAAAC
* *
17540 CTTAAACCTCAAATCTTAAA-CCTAAA
1 CTTAAACCTCAAACCCTAAACCCTAAA
*
17566 TCTTAGACCTCAAACCCTAAACCCTAAA
1 -CTTAAACCTCAAACCCTAAACCCTAAA
17594 CTCTAAAC
1 CT-TAAAC
17602 ATGAAATTAC
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
27 19 0.66
28 10 0.34
ACGTcount: A:0.42, C:0.32, G:0.02, T:0.24
Consensus pattern (27 bp):
CTTAAACCTCAAACCCTAAACCCTAAA
Found at i:33717 original size:5 final size:5
Alignment explanation
Indices: 33707--33735 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
33697 GGGAGTGGAT
33707 GTTGG GTTGG GTTGG GTTGG GTTGG GTTG
1 GTTGG GTTGG GTTGG GTTGG GTTGG GTTG
33736 CCATTTGGTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.59, T:0.41
Consensus pattern (5 bp):
GTTGG
Found at i:37575 original size:19 final size:19
Alignment explanation
Indices: 37551--37587 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
37541 CACATCAATA
* *
37551 TATTTATTTATATAAATTT
1 TATTTAATTAAATAAATTT
37570 TATTTAATTAAATAAATT
1 TATTTAATTAAATAAATT
37588 GAAAAAAATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (19 bp):
TATTTAATTAAATAAATTT
Found at i:47878 original size:36 final size:36
Alignment explanation
Indices: 47786--48064 Score: 354
Period size: 36 Copynumber: 7.9 Consensus size: 36
47776 TAGTTTAATT
* *
47786 GGAAGTG-TGATGCTTCTTTCCGTTCGACTTGAATC
1 GGAAGTGCCGATGCTTCCTTCCGTTCGACTTGAATC
* * *
47821 GAAAGTG-CGATGCTTCTTTCCGTTCGATTTGAATC
1 GGAAGTGCCGATGCTTCCTTCCGTTCGACTTGAATC
*
47856 GGAAGTGCCGATGCTTCCTTCCGTTCGATTTGAATC
1 GGAAGTGCCGATGCTTCCTTCCGTTCGACTTGAATC
* * *
47892 GGAAGTGCTGATGCTT-CATCCGTTCGATTTGAATC
1 GGAAGTGCCGATGCTTCCTTCCGTTCGACTTGAATC
* * *
47927 AGAAATGCCGATGCTTCTTTCCGTTCGACTTGAATC
1 GGAAGTGCCGATGCTTCCTTCCGTTCGACTTGAATC
* **
47963 GGAAGTGTCGATGCCTT-CTTCCGTTTAACTTGAATC
1 GGAAGTGCCGATG-CTTCCTTCCGTTCGACTTGAATC
47999 GGAAGTGCCGATGCCTT-CTTCCGTTCGACTTGAATC
1 GGAAGTGCCGATG-CTTCCTTCCGTTCGACTTGAATC
*
48035 GGAAGTGCCGATCCTTCCTTCCGTTC-ACTT
1 GGAAGTGCCGATGCTTCCTTCCGTTCGACTT
48065 CAATTCTGTC
Statistics
Matches: 217, Mismatches: 23, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
35 76 0.35
36 138 0.64
37 3 0.01
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.34
Consensus pattern (36 bp):
GGAAGTGCCGATGCTTCCTTCCGTTCGACTTGAATC
Found at i:47889 original size:71 final size:71
Alignment explanation
Indices: 47786--48060 Score: 367
Period size: 71 Copynumber: 3.9 Consensus size: 71
47776 TAGTTTAATT
* * *
47786 GGAAGTG-TGATGCTTCTTTCCGTTCGACTTGAATCGAAAGTG-CGATGCTTCTTTCCGTTCGAT
1 GGAAGTGCCGATGCTTCCTTCCGTTCGACTTGAATCGGAAGTGCCGATGCTTC-TTCCGTTCGAT
47849 TTGAATC
65 TTGAATC
* * *
47856 GGAAGTGCCGATGCTTCCTTCCGTTCGATTTGAATCGGAAGTGCTGATGCTTCATCCGTTCGATT
1 GGAAGTGCCGATGCTTCCTTCCGTTCGACTTGAATCGGAAGTGCCGATGCTTCTTCCGTTCGATT
47921 TGAATC
66 TGAATC
* * * * ** *
47927 AGAAATGCCGATGCTTCTTTCCGTTCGACTTGAATCGGAAGTGTCGATGCCTTCTTCCGTTTAAC
1 GGAAGTGCCGATGCTTCCTTCCGTTCGACTTGAATCGGAAGTGCCGATG-CTTCTTCCGTTCGAT
47992 TTGAATC
65 TTGAATC
*
47999 GGAAGTGCCGATGCCTT-CTTCCGTTCGACTTGAATCGGAAGTGCCGATCCTTCCTTCCGTTC
1 GGAAGTGCCGATG-CTTCCTTCCGTTCGACTTGAATCGGAAGTGCCGATGCTT-CTTCCGTTC
48061 ACTTCAATTC
Statistics
Matches: 178, Mismatches: 22, Indels: 8
0.86 0.11 0.04
Matches are distributed among these distances:
70 7 0.04
71 94 0.53
72 74 0.42
73 3 0.02
ACGTcount: A:0.18, C:0.24, G:0.24, T:0.34
Consensus pattern (71 bp):
GGAAGTGCCGATGCTTCCTTCCGTTCGACTTGAATCGGAAGTGCCGATGCTTCTTCCGTTCGATT
TGAATC
Found at i:47960 original size:107 final size:106
Alignment explanation
Indices: 47786--48064 Score: 377
Period size: 107 Copynumber: 2.6 Consensus size: 106
47776 TAGTTTAATT
*
47786 GGAAGTG-TGATGCTTCTTTCCGTTCGACTTGAATCGAAAGTG-CGATGCTTCTTTCCGTTCGAT
1 GGAAGTGCTGATGCTTC-TTCCGTTCGACTTGAATCGAAA-TGCCGATGCTTCTTTCCGTTCGAC
* *
47849 TTGAATCGGAAGTGCCGATG-CTTCCTTCCGTTCGATTTGAATC
64 TTGAATCGGAAGTGCCGATGCCTT-CTTCCGTTCAACTTGAATC
* *
47892 GGAAGTGCTGATGCTTCATCCGTTCGATTTGAATCAGAAATGCCGATGCTTCTTTCCGTTCGACT
1 GGAAGTGCTGATGCTTCTTCCGTTCGACTTGAATC-GAAATGCCGATGCTTCTTTCCGTTCGACT
* *
47957 TGAATCGGAAGTGTCGATGCCTTCTTCCGTTTAACTTGAATC
65 TGAATCGGAAGTGCCGATGCCTTCTTCCGTTCAACTTGAATC
* * * *
47999 GGAAGTGCCGATGCCTTCTTCCGTTCGACTTGAATCGGAAGTGCCGATCCTTCCTTCCGTTC-AC
1 GGAAGTGCTGATG-CTTCTTCCGTTCGACTTGAATC-GAAATGCCGATGCTTCTTTCCGTTCGAC
48063 TT
64 TT
48065 CAATTCTGTC
Statistics
Matches: 154, Mismatches: 14, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
106 25 0.16
107 84 0.55
108 45 0.29
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.34
Consensus pattern (106 bp):
GGAAGTGCTGATGCTTCTTCCGTTCGACTTGAATCGAAATGCCGATGCTTCTTTCCGTTCGACTT
GAATCGGAAGTGCCGATGCCTTCTTCCGTTCAACTTGAATC
Found at i:49346 original size:39 final size:38
Alignment explanation
Indices: 49303--49414 Score: 111
Period size: 39 Copynumber: 2.9 Consensus size: 38
49293 TTTATTATAG
* *
49303 TAATATAGTATAATTTTTTGAAAATGTTTTTGAAAAATA
1 TAATATA-TATAGTTTTTTAAAAATGTTTTTGAAAAATA
** * *
49342 TAATATATATAGTTTTCAAAAAATATTTTTTGAAATATA
1 TAATATATATAGTTTTTTAAAAAT-GTTTTTGAAAAATA
* * *
49381 T-AT-TATATAGTTTTTTTAAAACGTTTTTAAAAAA
1 TAATATATATAGTTTTTTAAAAATGTTTTTGAAAAA
49415 CTTATATCTT
Statistics
Matches: 59, Mismatches: 13, Indels: 5
0.77 0.17 0.06
Matches are distributed among these distances:
36 9 0.15
37 15 0.25
38 15 0.25
39 20 0.34
ACGTcount: A:0.44, C:0.02, G:0.07, T:0.47
Consensus pattern (38 bp):
TAATATATATAGTTTTTTAAAAATGTTTTTGAAAAATA
Found at i:49408 original size:37 final size:39
Alignment explanation
Indices: 49303--49408 Score: 110
Period size: 37 Copynumber: 2.8 Consensus size: 39
49293 TTTATTATAG
* *
49303 TAATATAGTATAATTTTTTGAAAATG-TTTTTGAAAAATA
1 TAATATA-TATAGTTTTTTAAAAATGTTTTTTGAAAAATA
** * *
49342 TAATATATATAGTTTTCAAAAAATATTTTTTGAAATATA
1 TAATATATATAGTTTTTTAAAAATGTTTTTTGAAAAATA
* *
49381 T-AT-TATATAGTTTTTTTAAAACGTTTTT
1 TAATATATATAGTTTTTTAAAAATGTTTTT
49409 AAAAAACTTA
Statistics
Matches: 55, Mismatches: 11, Indels: 4
0.79 0.16 0.06
Matches are distributed among these distances:
37 20 0.36
38 15 0.27
39 20 0.36
ACGTcount: A:0.41, C:0.02, G:0.08, T:0.50
Consensus pattern (39 bp):
TAATATATATAGTTTTTTAAAAATGTTTTTTGAAAAATA
Found at i:49488 original size:35 final size:33
Alignment explanation
Indices: 49432--49648 Score: 157
Period size: 34 Copynumber: 6.4 Consensus size: 33
49422 CTTATATACA
*
49432 ATATATA-AGTTTTAAAACATTTTGAAAATTAT
1 ATATATATAGTTTTAAAACATTTTGAAAACTAT
*
49464 ATAGTATATAGTTTTGAAATCATTTTGAAAA-TAT
1 ATA-TATATAGTTTT-AAAACATTTTGAAAACTAT
*
49498 A-ATATATAGCTTTTAAAAAACATTTTTGGAAAATTTATAT
1 ATATATATAG-TTTT--AAAACA-TTTT-GAAAA---CTAT
* *
49538 AATATATATAGTTTTAAAAAATTTAGAAAACT-T
1 -ATATATATAGTTTTAAAACATTTTGAAAACTAT
49571 ATATA-AT-GTTTTTAAAATCATTTTTGAAAACTAT
1 ATATATATAG-TTTTAAAA-CA-TTTTGAAAACTAT
* **
49605 ATA-ATATAGTTTTGAAA-ATGTTTTTAAA-TAT
1 ATATATATAGTTTTAAAACAT-TTTGAAAACTAT
49636 A-ATATATAGTTTT
1 ATATATATAGTTTT
49649 TTTTGAAACA
Statistics
Matches: 153, Mismatches: 11, Indels: 43
0.74 0.05 0.21
Matches are distributed among these distances:
30 2 0.01
31 25 0.16
32 23 0.15
33 21 0.14
34 29 0.19
35 19 0.12
36 5 0.03
37 5 0.03
38 3 0.02
39 5 0.03
40 3 0.02
41 5 0.03
42 8 0.05
ACGTcount: A:0.44, C:0.03, G:0.08, T:0.45
Consensus pattern (33 bp):
ATATATATAGTTTTAAAACATTTTGAAAACTAT
Found at i:49575 original size:72 final size:71
Alignment explanation
Indices: 49434--49612 Score: 180
Period size: 71 Copynumber: 2.6 Consensus size: 71
49424 TATATACAAT
* ** *
49434 ATATAA-GTTTT--AAAACA-TTTTGAAAATTATAT-A-GTATATAGTTTTGAAATCATTTTGAA
1 ATATAATGTTTTAAAAAACATTTTTGAAAATTATATAATATATATAGTTTTGAAAAAATTTAGAA
49493 AATATA
66 AATATA
49499 ATAT-ATAGCTTTTAAAAAACATTTTTGGAAAATTTATATAATATATATAGTTTT-AAAAAATTT
1 ATATAAT-G-TTTTAAAAAACATTTTT-GAAAA-TTATATAATATATATAGTTTTGAAAAAATTT
49562 AGAAAACT-T-
62 AGAAAA-TATA
* * *
49571 ATATAATGTTTTTAAAATCATTTTTGAAAACTATATAATATA
1 ATATAATGTTTTAAAAAACATTTTTGAAAATTATATAATATA
49613 GTTTTGAAAA
Statistics
Matches: 95, Mismatches: 7, Indels: 20
0.78 0.06 0.16
Matches are distributed among these distances:
64 1 0.01
65 4 0.04
66 1 0.01
67 4 0.04
69 17 0.18
70 9 0.09
71 20 0.21
72 11 0.12
73 16 0.17
74 12 0.13
ACGTcount: A:0.46, C:0.04, G:0.07, T:0.43
Consensus pattern (71 bp):
ATATAATGTTTTAAAAAACATTTTTGAAAATTATATAATATATATAGTTTTGAAAAAATTTAGAA
AATATA
Found at i:49576 original size:37 final size:37
Alignment explanation
Indices: 49426--49577 Score: 117
Period size: 35 Copynumber: 4.2 Consensus size: 37
49416 TTATATCTTA
* *
49426 TATACAATATATA-AGTTTT-AAAACATTTTGAAAAT
1 TATATAATATATATAGTTTTAAAAAAATTTTGAAAAT
* * **
49461 TATAT-A-GTATATAGTTTTGAAATCATTTTG-AAA-
1 TATATAATATATATAGTTTTAAAAAAATTTTGAAAAT
49494 -ATAT-A-ATATATAGCTTTTAAAAAACATTTTTGGAAAATT
1 TATATAATATATATAG-TTTTAAAAAA-A-TTTT-GAAAA-T
*
49533 TATATAATATATATAGTTTT-AAAAAATTTAGAAAACT
1 TATATAATATATATAGTTTTAAAAAAATTTTGAAAA-T
49570 TATATAAT
1 TATATAAT
49578 GTTTTTAAAA
Statistics
Matches: 96, Mismatches: 9, Indels: 22
0.76 0.07 0.17
Matches are distributed among these distances:
32 12 0.12
33 11 0.11
34 11 0.11
35 18 0.19
36 1 0.01
37 17 0.18
38 3 0.03
39 1 0.01
40 9 0.09
41 5 0.05
42 8 0.08
ACGTcount: A:0.47, C:0.04, G:0.07, T:0.42
Consensus pattern (37 bp):
TATATAATATATATAGTTTTAAAAAAATTTTGAAAAT
Found at i:49582 original size:30 final size:32
Alignment explanation
Indices: 49539--49610 Score: 78
Period size: 32 Copynumber: 2.2 Consensus size: 32
49529 AATTTATATA
49539 ATATATATAG-TTTTAAAA-AATTTAGAAAACTT
1 ATATA-ATAGTTTTTAAAACAATTTAGAAAAC-T
* *
49571 ATATAAT-GTTTTTAAAATCATTTTTGAAAACT
1 ATATAATAGTTTTTAAAA-CAATTTAGAAAACT
49603 ATATAATA
1 ATATAATA
49611 TAGTTTTGAA
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
30 1 0.03
31 10 0.29
32 13 0.38
33 10 0.29
ACGTcount: A:0.47, C:0.04, G:0.06, T:0.43
Consensus pattern (32 bp):
ATATAATAGTTTTTAAAACAATTTAGAAAACT
Found at i:49705 original size:20 final size:22
Alignment explanation
Indices: 49677--49729 Score: 60
Period size: 20 Copynumber: 2.5 Consensus size: 22
49667 ATATAATCTA
49677 TATTATTATTAAT-ATTT-ATTT
1 TATT-TTATTAATCATTTCATTT
49698 TATTTTATT--TCATTTCATTT
1 TATTTTATTAATCATTTCATTT
*
49718 CATTTTATTAAT
1 TATTTTATTAAT
49730 TTAATTTAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 7
0.77 0.03 0.20
Matches are distributed among these distances:
18 1 0.04
19 4 0.15
20 17 0.63
21 4 0.15
22 1 0.04
ACGTcount: A:0.28, C:0.06, G:0.00, T:0.66
Consensus pattern (22 bp):
TATTTTATTAATCATTTCATTT
Found at i:49712 original size:15 final size:14
Alignment explanation
Indices: 49689--49750 Score: 52
Period size: 14 Copynumber: 4.4 Consensus size: 14
49679 TTATTATTAA
*
49689 TATTTATTTTATTT
1 TATTTAATTTATTT
*
49703 TATTTCATTTCATTT
1 TATTTAATTT-ATTT
* * *
49718 CATTTTATTAATTT
1 TATTTAATTTATTT
* *
49732 AATTTAATTTAATT
1 TATTTAATTTATTT
49746 TATTT
1 TATTT
49751 TGTTTTGTGA
Statistics
Matches: 37, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
14 26 0.70
15 11 0.30
ACGTcount: A:0.27, C:0.05, G:0.00, T:0.68
Consensus pattern (14 bp):
TATTTAATTTATTT
Found at i:49731 original size:24 final size:24
Alignment explanation
Indices: 49690--49750 Score: 70
Period size: 24 Copynumber: 2.5 Consensus size: 24
49680 TATTATTAAT
* * *
49690 ATTTATTTTATTTTATTTCATTTC
1 ATTTATTTTATTTAATTTAATTTA
49714 ATTTCATTTTA-TTAATTTAATTTA
1 ATTT-ATTTTATTTAATTTAATTTA
*
49738 ATTTAATTTATTT
1 ATTTATTTTATTT
49751 TGTTTTGTGA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
23 5 0.16
24 20 0.65
25 6 0.19
ACGTcount: A:0.28, C:0.05, G:0.00, T:0.67
Consensus pattern (24 bp):
ATTTATTTTATTTAATTTAATTTA
Found at i:49750 original size:19 final size:18
Alignment explanation
Indices: 49689--49750 Score: 61
Period size: 19 Copynumber: 3.3 Consensus size: 18
49679 TTATTATTAA
*
49689 TATTTATTTTATTTTATT
1 TATTTATTTAATTTTATT
*
49707 TCATTTCATTTCATTTTATT
1 T-ATTT-ATTTAATTTTATT
* *
49727 AATTTAATTTAATTTAATT
1 TATTT-ATTTAATTTTATT
49746 TATTT
1 TATTT
49751 TGTTTTGTGA
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
18 1 0.03
19 23 0.64
20 12 0.33
ACGTcount: A:0.27, C:0.05, G:0.00, T:0.68
Consensus pattern (18 bp):
TATTTATTTAATTTTATT
Found at i:56196 original size:84 final size:83
Alignment explanation
Indices: 55920--56619 Score: 682
Period size: 84 Copynumber: 8.4 Consensus size: 83
55910 TTTAAGACAA
* ** * *
55920 CATTTGCAGCATAACTTAAATTAAGAAGGGTTATCTGCCAACCAAAGAACTTCGAGTTCGACTAC
1 CATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGTC-ACCAAAGACCTTCGAGTTCGACTAC
**
55985 GCTCAGCTCCAAGGCGTAT
65 GCTCAGCTCCAAGGCACAT
* ** * * *
56004 CATTTGCAACATAACTTAAGTCGAGAAGGGTTATCTG---CCAAAGACCCCCGAGTTTGATTACA
1 CATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGTCACCAAAGACCTTCGAGTTCGACTACG
* *
56066 CTCAGCTTCGAGGGCACAT
66 CTCAGC-TCCAAGGCACAT
* * * * *
56085 AATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCACCAAAAGACCTTCGAGTTCGACTAC
1 CATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGTCACC-AAAGACCTTCGAGTTCGACTAC
*
56150 GCTCAGCTCCAAGGCATAT
65 GCTCAGCTCCAAGGCACAT
* *
56169 CATTTGCAGCATAACTTAAATCGAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTAC
1 CATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGTC-ACCAAAGACCTTCGAGTTCGACTAC
**
56234 GCTCAGCTCCAAGGTGCAT
65 GCTCAGCTCCAAGGCACAT
* * * * * ** * *
56253 CATTTGCTGTATAGCTTAAGTCGAGAAGGGCTAT-T-T-GCCAAAGACCCCCGAGTTCGATTACA
1 CATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGTCACCAAAGACCTTCGAGTTCGACTACG
* *
56315 CTCAGCTTCGAGGGCACAT
66 CTCAGC-TCCAAGGCACAT
* * * * * *
56334 CATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCATCAAAAGACCTTCGAGTTTGACTAC
1 CATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGTCA-CCAAAGACCTTCGAGTTCGACTAC
*
56399 GCTCAGCTCCAAGGCATAT
65 GCTCAGCTCCAAGGCACAT
* * * *
56418 CATTTGCAGCATACCTTAAATCGAGAAGGGTTATCTGCCAACCAAAGACCTTTGAGTTCGACTAC
1 CATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGTC-ACCAAAGACCTTCGAGTTCGACTAC
*
56483 GCTCAGCTCCAAGGCATAT
65 GCTCAGCTCCAAGGCACAT
* * * * * * *
56502 CATTTGTAGTATATCTTAAGCCGAGAAGGGCTATCT-T--CCAAAGA-CTCTCGAGTCCGATTAC
1 CATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGTCACCAAAGACCT-TCGAGTTCGACTAC
* * * *
56563 ACTCAGCTTCGAGGGCACGT
65 GCTCAGC-TCCAAGGCACAT
* * * *
56583 TATTTTCAGCATATCTTAAGTCAAGAAGGGTTATCTG
1 CATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTG
56620 CCAATCGGAG
Statistics
Matches: 498, Mismatches: 103, Indels: 32
0.79 0.16 0.05
Matches are distributed among these distances:
79 2 0.00
80 76 0.15
81 110 0.22
82 1 0.00
83 2 0.00
84 254 0.51
85 53 0.11
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.26
Consensus pattern (83 bp):
CATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGTCACCAAAGACCTTCGAGTTCGACTACG
CTCAGCTCCAAGGCACAT
Found at i:56198 original size:165 final size:166
Alignment explanation
Indices: 55920--56648 Score: 722
Period size: 165 Copynumber: 4.4 Consensus size: 166
55910 TTTAAGACAA
* ** *
55920 CATTTGCAGCATAACTTAAATTAAGAAGGGTTATCTGCCAACCAAAGAACTTCGAGTTCGACTAC
1 CATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTAC
* *
55985 GCTCAGCTCCAAGGCGTATCATTTGCAACATAACTTAAGTCGAGAAGGGTTATCTG-CCAAAGAC
66 GCTCAGCTCCAAGGCATATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGACCAAAGAC
* * *
56049 CCCCGAGTTTGATTACACTCAGCTTCGAGGGCACAT
131 CCTCGAGTTCGACTACACTCAGCTTCGAGGGCACAT
* * * * * *
56085 AATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTC-ACCAAAAGACCTTCGAGTTCGACTA
1 CATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACC-AAAGACCTTCGAGTTCGACTA
*
56149 CGCTCAGCTCCAAGGCATATCATTTGCAGCATAACTTAAATCGAGAAGGGTTATCTGCCAACCAA
65 CGCTCAGCTCCAAGGCATATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTG---ACCAA
* * * *
56214 AGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGTG--CAT
127 AGACCCTCGAGTTCGACTACACTCAGCTTCGAGG-GCACAT
* * * * * ** *
56253 CATTTGCTGTATAGCTTAAGTCGAGAAGGGCTATTTG----CCAAAGACCCCCGAGTTCGATTAC
1 CATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTAC
* * * * * * * * *
56314 ACTCAGCTTCGAGGGCACATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCATCAAA
66 GCTCAGC-TCCAAGGCATATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTG--A-CCAA
* * * * * *
56379 AGACCTTCGAGTTTGACTACGCTCAGC-TCCAAGGCATAT
127 AGACCCTCGAGTTCGACTACACTCAGCTTCGAGGGCACAT
* * *
56418 CATTTGCAGCATACCTTAAATCGAGAAGGGTTATCTGCCAACCAAAGACCTTTGAGTTCGACTAC
1 CATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTAC
* * * * * *
56483 GCTCAGCTCCAAGGCATATCATTTGTAGTATATCTTAAGCCGAGAAGGGCTATCT-TCCAAAGAC
66 GCTCAGCTCCAAGGCATATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGACCAAAGAC
* * * *
56547 TCTCGAGTCCGATTACACTCAGCTTCGAGGGCACGT
131 CCTCGAGTTCGACTACACTCAGCTTCGAGGGCACAT
* * * * * ** * *
56583 TATTTTCAGCATATCTTAAGTCAAGAAGGGTTATCTGCCAATCGGAGACCTCCGAGTTCGATTAC
1 CATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTAC
56648 G
66 G
56649 TTTAGCTCAG
Statistics
Matches: 455, Mismatches: 94, Indels: 30
0.79 0.16 0.05
Matches are distributed among these distances:
163 1 0.00
164 56 0.12
165 273 0.60
168 67 0.15
169 57 0.13
170 1 0.00
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.26
Consensus pattern (166 bp):
CATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTAC
GCTCAGCTCCAAGGCATATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGACCAAAGAC
CCTCGAGTTCGACTACACTCAGCTTCGAGGGCACAT
Found at i:56358 original size:249 final size:249
Alignment explanation
Indices: 55920--56619 Score: 1098
Period size: 249 Copynumber: 2.8 Consensus size: 249
55910 TTTAAGACAA
** *
55920 CATTTGCAGCATAACTTAAATTAAGAAGGGTTATCTGCCAACCAAAGAACTTCGAGTTCGACTAC
1 CATTTGCAGCATAACTTAAATCGAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTAC
*** * *
55985 GCTCAGCTCCAAGGCGTATCATTTGCAACATAACTTAAGTCGAGAAGGGTTATCTGCCAAAGACC
66 GCTCAGCTCCAAGGCGTATCATTTGCTGTATAACTTAAGTCGAGAAGGGCTATTTGCCAAAGACC
*
56050 CCCGAGTTTGATTACACTCAGCTTCGAGGGCACATAATTTACAGCATAACTCAAGGCTAGAAGGG
131 CCCGAGTTCGATTACACTCAGCTTCGAGGGCACATAATTTACAGCATAACTCAAGGCTAGAAGGG
56115 TTATCTGTCACCAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATAT
196 TTATCTGTCACCAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATAT
56169 CATTTGCAGCATAACTTAAATCGAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTAC
1 CATTTGCAGCATAACTTAAATCGAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTAC
* * *
56234 GCTCAGCTCCAAGGTGCATCATTTGCTGTATAGCTTAAGTCGAGAAGGGCTATTTGCCAAAGACC
66 GCTCAGCTCCAAGGCGTATCATTTGCTGTATAACTTAAGTCGAGAAGGGCTATTTGCCAAAGACC
*
56299 CCCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTACAGCATAACTCAAGGCTAGAAGGG
131 CCCGAGTTCGATTACACTCAGCTTCGAGGGCACATAATTTACAGCATAACTCAAGGCTAGAAGGG
* *
56364 TTATCTGTCATCAAAAGACCTTCGAGTTTGACTACGCTCAGCTCCAAGGCATAT
196 TTATCTGTCACCAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATAT
* *
56418 CATTTGCAGCATACCTTAAATCGAGAAGGGTTATCTGCCAACCAAAGACCTTTGAGTTCGACTAC
1 CATTTGCAGCATAACTTAAATCGAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTAC
* * *
56483 GCTCAGCTCCAAGGCATATCATTTG-TAGTATATCTTAAGCCGAGAAGGGCTATCTT-CCAAAGA
66 GCTCAGCTCCAAGGCGTATCATTTGCT-GTATAACTTAAGTCGAGAAGGGCTAT-TTGCCAAAGA
* * * * * * * * * *
56546 CTCTCGAGTCCGATTACACTCAGCTTCGAGGGCACGTTATTTTCAGCATATCTTAAGTCAAGAAG
129 CCCCCGAGTTCGATTACACTCAGCTTCGAGGGCACATAATTTACAGCATAACTCAAGGCTAGAAG
56611 GGTTATCTG
194 GGTTATCTG
56620 CCAATCGGAG
Statistics
Matches: 417, Mismatches: 32, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
248 1 0.00
249 414 0.99
250 2 0.00
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.26
Consensus pattern (249 bp):
CATTTGCAGCATAACTTAAATCGAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTAC
GCTCAGCTCCAAGGCGTATCATTTGCTGTATAACTTAAGTCGAGAAGGGCTATTTGCCAAAGACC
CCCGAGTTCGATTACACTCAGCTTCGAGGGCACATAATTTACAGCATAACTCAAGGCTAGAAGGG
TTATCTGTCACCAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATAT
Found at i:57314 original size:39 final size:39
Alignment explanation
Indices: 57271--57357 Score: 113
Period size: 39 Copynumber: 2.2 Consensus size: 39
57261 TTTATTATAG
*
57271 TAATATAGTATAATTTTTAAAAAAT-GTTTTTGAAAAATA
1 TAATATA-TATAATTTTCAAAAAATAGTTTTTGAAAAATA
* * *
57310 TAATATATATAGTTTTCAAAAAATATTTTTTGAAATATA
1 TAATATATATAATTTTCAAAAAATAGTTTTTGAAAAATA
*
57349 TATTATATA
1 TAATATATA
57358 GTTTTTTTAA
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
38 15 0.36
39 27 0.64
ACGTcount: A:0.47, C:0.01, G:0.06, T:0.46
Consensus pattern (39 bp):
TAATATATATAATTTTCAAAAAATAGTTTTTGAAAAATA
Found at i:57346 original size:37 final size:37
Alignment explanation
Indices: 57271--57362 Score: 107
Period size: 37 Copynumber: 2.4 Consensus size: 37
57261 TTTATTATAG
* *
57271 TAATATAGTATAATTTTTAAAAAATGTTTTTGAAAAATA
1 TAATATA-TATAGTTTTCAAAAAATGTTTTTG-AAAATA
*
57310 TAATATATATAGTTTTCAAAAAATATTTTTTG-AAATA
1 TAATATATATAGTTTTCAAAAAAT-GTTTTTGAAAATA
57347 T-ATATTATATAGTTTT
1 TAATA-TATATAGTTTT
57363 TTTAAAACGA
Statistics
Matches: 48, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
36 3 0.06
37 17 0.35
38 15 0.31
39 13 0.27
ACGTcount: A:0.45, C:0.01, G:0.07, T:0.48
Consensus pattern (37 bp):
TAATATATATAGTTTTCAAAAAATGTTTTTGAAAATA
Found at i:57440 original size:35 final size:31
Alignment explanation
Indices: 57399--57483 Score: 98
Period size: 35 Copynumber: 2.5 Consensus size: 31
57389 TCTTATATAC
57399 AATATATAAGTTTTAAAACATTTTGAAAATTAT
1 AATATAT-AGTTTTAAAACATTTTGAAAA-TAT
* *
57432 ATAGTATATACTTTTGAAATCATTTTGAAAATAT
1 A-A-TATATAGTTTT-AAAACATTTTGAAAATAT
57466 AATATATAGTTTGTAAAA
1 AATATATAGTTT-TAAAA
57484 AACATTTTTG
Statistics
Matches: 44, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
32 12 0.27
33 3 0.07
34 10 0.23
35 19 0.43
ACGTcount: A:0.46, C:0.04, G:0.08, T:0.42
Consensus pattern (31 bp):
AATATATAGTTTTAAAACATTTTGAAAATAT
Found at i:57493 original size:35 final size:34
Alignment explanation
Indices: 57409--57491 Score: 91
Period size: 34 Copynumber: 2.4 Consensus size: 34
57399 AATATATAAG
57409 TTTT-AAAACATTTTGAAAATTATATAGTATATAC
1 TTTTAAAAACATTTTGAAAA-TATATAGTATATAC
* * *
57443 TTTTGAAATCATTTTGAAAATATA-A-TATATAG
1 TTTTAAAAACATTTTGAAAATATATAGTATATAC
57475 TTTGTAAAAAACATTTT
1 TTT-T-AAAAACATTTT
57492 TGGAAAATTT
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
32 9 0.21
33 2 0.05
34 17 0.40
35 14 0.33
ACGTcount: A:0.43, C:0.05, G:0.07, T:0.45
Consensus pattern (34 bp):
TTTTAAAAACATTTTGAAAATATATAGTATATAC
Found at i:57503 original size:11 final size:11
Alignment explanation
Indices: 57487--57512 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
57477 TGTAAAAAAC
57487 ATTTTTGGAAA
1 ATTTTTGGAAA
57498 ATTTTTGGAAA
1 ATTTTTGGAAA
57509 ATTT
1 ATTT
57513 ATATAATATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.35, C:0.00, G:0.15, T:0.50
Consensus pattern (11 bp):
ATTTTTGGAAA
Found at i:57662 original size:14 final size:16
Alignment explanation
Indices: 57642--57686 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
57632 TTTTGAAACT
57642 TATATA-TATTATATAA
1 TATATATTATTAT-TAA
57658 TATATATTATTATTAA
1 TATATATTATTATTAA
*
57674 TATTTATT-TTATT
1 TATATATTATTATT
57687 TTATTTTATT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
15 5 0.19
16 16 0.59
17 6 0.22
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (16 bp):
TATATATTATTATTAA
Found at i:57676 original size:12 final size:14
Alignment explanation
Indices: 57643--57681 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 14
57633 TTTGAAACTT
57643 ATATATATTATATA
1 ATATATATTATATA
57657 ATATATATTATTATTA
1 ATATATATTA-TA-TA
*
57673 ATATTTATT
1 ATATATATT
57682 TTATTTTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 10 0.45
15 2 0.09
16 10 0.45
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (14 bp):
ATATATATTATATA
Found at i:57718 original size:5 final size:5
Alignment explanation
Indices: 57676--57711 Score: 63
Period size: 5 Copynumber: 7.2 Consensus size: 5
57666 ATTATTAATA
*
57676 TTTAT TTTAT TTTAT TTTAT TTTAT TTCAT TTTAT T
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT T
57712 AATTTAAATT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.78
Consensus pattern (5 bp):
TTTAT
Found at i:62446 original size:18 final size:18
Alignment explanation
Indices: 62404--62447 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
62394 CACCCACCTT
* *
62404 CATCTCATATGTATCCTC
1 CATCTCAAATATATCCTC
62422 C-TCCTCAAATATATCCTC
1 CAT-CTCAAATATATCCTC
62440 CATCTCAA
1 CATCTCAA
62448 TTATTTGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
17 1 0.05
18 20 0.91
19 1 0.05
ACGTcount: A:0.27, C:0.36, G:0.02, T:0.34
Consensus pattern (18 bp):
CATCTCAAATATATCCTC
Found at i:76661 original size:43 final size:41
Alignment explanation
Indices: 76601--76830 Score: 214
Period size: 41 Copynumber: 5.7 Consensus size: 41
76591 GAAAATGATT
*
76601 AAATTAGGGTCTCAATTATAAAGGTAAAGAGTGAGATTAAAA
1 AAATTAGGGCCTCAATTATAAAGGTAAA-AGTGAGATTAAAA
76643 AAATTAAGGGCCTCAATTATAAA-G-----GT-A-ATTAAAA
1 AAATT-AGGGCCTCAATTATAAAGGTAAAAGTGAGATTAAAA
* *
76677 AAA-TAGGGGTCTCAATTATAAAGGTAGAAAGTGAGATT--GA
1 AAATTA-GGGCCTCAATTATAAAGGTA-AAAGTGAGATTAAAA
* *
76717 AAATTAGGAGCCTCAATTATAAAGGTAAAAAGT-ACGACTGAAA
1 AAATTAGG-GCCTCAATTATAAAGGT-AAAAGTGA-GATTAAAA
** *
76760 AAATTAGGGATTTCAATTATAAAGGTAAAAGTGAGATTAAGA
1 AAATTAGGG-CCTCAATTATAAAGGTAAAAGTGAGATTAAAA
* *
76802 GAATTAGGGCCTCAATTATAAAGATAAAA
1 AAATTAGGGCCTCAATTATAAAGGTAAAA
76831 ATTAGGGGCA
Statistics
Matches: 154, Mismatches: 15, Indels: 39
0.74 0.07 0.19
Matches are distributed among these distances:
32 1 0.01
33 16 0.10
34 11 0.07
35 1 0.01
36 2 0.01
40 9 0.06
41 44 0.29
42 30 0.19
43 40 0.26
ACGTcount: A:0.47, C:0.07, G:0.20, T:0.25
Consensus pattern (41 bp):
AAATTAGGGCCTCAATTATAAAGGTAAAAGTGAGATTAAAA
Found at i:76691 original size:33 final size:34
Alignment explanation
Indices: 76636--76702 Score: 109
Period size: 33 Copynumber: 2.0 Consensus size: 34
76626 AAAGAGTGAG
76636 ATTAAAAAAATTAAGGGCCTCAATTATAAAGGTA
1 ATTAAAAAAATTAAGGGCCTCAATTATAAAGGTA
* *
76670 ATTAAAAAAA-TAGGGGTCTCAATTATAAAGGTA
1 ATTAAAAAAATTAAGGGCCTCAATTATAAAGGTA
76703 GAAAGTGAGA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
33 21 0.68
34 10 0.32
ACGTcount: A:0.49, C:0.07, G:0.16, T:0.27
Consensus pattern (34 bp):
ATTAAAAAAATTAAGGGCCTCAATTATAAAGGTA
Found at i:76762 original size:84 final size:83
Alignment explanation
Indices: 76673--76831 Score: 239
Period size: 84 Copynumber: 1.9 Consensus size: 83
76663 AAAGGTAATT
*
76673 AAAAAAATAGGGGTCTCAATTATAAAGGTAGAAAGTGAGATT-GAAAATTAGGAGCCTCAATTAT
1 AAAAAAATAGGGATCTCAATTATAAAGGTA-AAAGTGAGATTAGAAAATTAGG-GCCTCAATTAT
*
76737 AAAGGTAAAAAGTACGACTG
64 AAAGATAAAAAGTACGACTG
* * *
76757 AAAAAATTAGGGATTTCAATTATAAAGGTAAAAGTGAGATTAAGAGAATTAGGGCCTCAATTATA
1 AAAAAAATAGGGATCTCAATTATAAAGGTAAAAGTGAGATT-AGAAAATTAGGGCCTCAATTATA
76822 AAGATAAAAA
65 AAGATAAAAA
76832 TTAGGGGCAT
Statistics
Matches: 68, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
83 11 0.16
84 48 0.71
85 9 0.13
ACGTcount: A:0.48, C:0.07, G:0.21, T:0.24
Consensus pattern (83 bp):
AAAAAAATAGGGATCTCAATTATAAAGGTAAAAGTGAGATTAGAAAATTAGGGCCTCAATTATAA
AGATAAAAAGTACGACTG
Found at i:83735 original size:17 final size:14
Alignment explanation
Indices: 83702--83752 Score: 54
Period size: 14 Copynumber: 3.8 Consensus size: 14
83692 ATATACATAC
83702 AAATACAAATAATT
1 AAATACAAATAATT
83716 AAATACAAAT-ATT
1 AAATACAAATAATT
* *
83729 -TAT-TAAATATATT
1 AAATACAAATA-ATT
83742 AAATACAAATA
1 AAATACAAATA
83753 TTTATTAAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 7
0.73 0.10 0.17
Matches are distributed among these distances:
11 4 0.14
12 2 0.07
13 6 0.21
14 12 0.41
15 5 0.17
ACGTcount: A:0.61, C:0.06, G:0.00, T:0.33
Consensus pattern (14 bp):
AAATACAAATAATT
Found at i:83742 original size:26 final size:26
Alignment explanation
Indices: 83708--83764 Score: 107
Period size: 26 Copynumber: 2.2 Consensus size: 26
83698 ATACAAATAC
83708 AAATA-ATTAAATACAAATATTTATT
1 AAATATATTAAATACAAATATTTATT
83733 AAATATATTAAATACAAATATTTATT
1 AAATATATTAAATACAAATATTTATT
83759 AAATAT
1 AAATAT
83765 TACATATAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
25 5 0.16
26 26 0.84
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (26 bp):
AAATATATTAAATACAAATATTTATT
Found at i:84847 original size:29 final size:29
Alignment explanation
Indices: 84801--84856 Score: 69
Period size: 29 Copynumber: 1.9 Consensus size: 29
84791 GTATTTTAAG
**
84801 TTATTTTAACTATTTAAAGTATAAAATGT
1 TTATTTTAACTATTTAAAAAATAAAATGT
*
84830 TTATTTTTA-TATTATAAAAAATAAAAT
1 TTATTTTAACTATT-TAAAAAATAAAAT
84857 TAAACAAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
28 4 0.17
29 19 0.83
ACGTcount: A:0.46, C:0.02, G:0.04, T:0.48
Consensus pattern (29 bp):
TTATTTTAACTATTTAAAAAATAAAATGT
Found at i:102621 original size:18 final size:20
Alignment explanation
Indices: 102600--102645 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
102590 TACTAATATC
*
102600 CTTAAAA-ATATTTT-ATTA
1 CTTAAAATATATTTTAATGA
*
102618 CTTAATAATTTATTTTAATGA
1 CTTAA-AATATATTTTAATGA
102639 CTTAAAA
1 CTTAAAA
102646 GTAAATAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
18 5 0.22
19 2 0.09
20 8 0.35
21 8 0.35
ACGTcount: A:0.43, C:0.07, G:0.02, T:0.48
Consensus pattern (20 bp):
CTTAAAATATATTTTAATGA
Found at i:102719 original size:17 final size:18
Alignment explanation
Indices: 102689--102725 Score: 67
Period size: 17 Copynumber: 2.1 Consensus size: 18
102679 TAATAGTGAG
102689 TTATTATAAATTATATTT
1 TTATTATAAATTATATTT
102707 TTATTAT-AATTATATTT
1 TTATTATAAATTATATTT
102724 TT
1 TT
102726 GTTTGTATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 12 0.63
18 7 0.37
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (18 bp):
TTATTATAAATTATATTT
Found at i:105959 original size:18 final size:18
Alignment explanation
Indices: 105936--105976 Score: 82
Period size: 18 Copynumber: 2.3 Consensus size: 18
105926 CATGCACAAT
105936 AGGTAAACCAATTTCAAC
1 AGGTAAACCAATTTCAAC
105954 AGGTAAACCAATTTCAAC
1 AGGTAAACCAATTTCAAC
105972 AGGTA
1 AGGTA
105977 CTGAACTACC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.44, C:0.20, G:0.15, T:0.22
Consensus pattern (18 bp):
AGGTAAACCAATTTCAAC
Found at i:107875 original size:24 final size:24
Alignment explanation
Indices: 107835--107884 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
107825 TACGGTGTAT
107835 TTCTACGCGGTCATTCGG-GACAAA
1 TTCTACGCGGTCATTCGGTG-CAAA
*
107859 TTCTACGTGG-CACTTCGGTGCAAA
1 TTCTACGCGGTCA-TTCGGTGCAAA
107883 TT
1 TT
107885 TATACGAGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
23 2 0.09
24 20 0.87
25 1 0.04
ACGTcount: A:0.22, C:0.24, G:0.24, T:0.30
Consensus pattern (24 bp):
TTCTACGCGGTCATTCGGTGCAAA
Found at i:108442 original size:22 final size:21
Alignment explanation
Indices: 108396--108461 Score: 98
Period size: 21 Copynumber: 3.1 Consensus size: 21
108386 CTATAGCAGT
*
108396 ACTGTAGCAGTGCATCGGTAC
1 ACTGTAGCAGTGCATCGATAC
108417 ACTGTAGCAGT-CAATTCGATAC
1 ACTGTAGCAGTGC-A-TCGATAC
108439 ACTGTAGCAGTGCATCGATAC
1 ACTGTAGCAGTGCATCGATAC
108460 AC
1 AC
108462 AATTTATATT
Statistics
Matches: 41, Mismatches: 1, Indels: 6
0.85 0.02 0.12
Matches are distributed among these distances:
20 1 0.02
21 21 0.51
22 18 0.44
23 1 0.02
ACGTcount: A:0.29, C:0.24, G:0.23, T:0.24
Consensus pattern (21 bp):
ACTGTAGCAGTGCATCGATAC
Found at i:110794 original size:9 final size:9
Alignment explanation
Indices: 110776--110808 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
110766 GGTATTGGAA
*
110776 TTCTTCATT
1 TTCTTTATT
110785 TTCTTTATT
1 TTCTTTATT
110794 TTCTTTATT
1 TTCTTTATT
110803 TT-TTTA
1 TTCTTTA
110809 AATATTTTTC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
8 4 0.17
9 19 0.83
ACGTcount: A:0.12, C:0.12, G:0.00, T:0.76
Consensus pattern (9 bp):
TTCTTTATT
Found at i:118852 original size:10 final size:10
Alignment explanation
Indices: 118833--118907 Score: 57
Period size: 10 Copynumber: 8.7 Consensus size: 10
118823 CATTTAATAA
*
118833 ATAAATGAAC
1 ATAAACGAAC
118843 ATAAACGAAC
1 ATAAACGAAC
118853 ----ACGAAC
1 ATAAACGAAC
118859 ATAAACGAAC
1 ATAAACGAAC
118869 ----ACGAAC
1 ATAAACGAAC
118875 ATAAACGAAC
1 ATAAACGAAC
118885 ----ACGAAC
1 ATAAACGAAC
118891 ATAAACGAAC
1 ATAAACGAAC
118901 ATAAACG
1 ATAAACG
118908 TTGGAGACCC
Statistics
Matches: 52, Mismatches: 1, Indels: 24
0.68 0.01 0.31
Matches are distributed among these distances:
6 18 0.35
10 34 0.65
ACGTcount: A:0.57, C:0.21, G:0.12, T:0.09
Consensus pattern (10 bp):
ATAAACGAAC
Found at i:118860 original size:16 final size:16
Alignment explanation
Indices: 118839--118901 Score: 126
Period size: 16 Copynumber: 3.9 Consensus size: 16
118829 ATAAATAAAT
118839 GAACATAAACGAACAC
1 GAACATAAACGAACAC
118855 GAACATAAACGAACAC
1 GAACATAAACGAACAC
118871 GAACATAAACGAACAC
1 GAACATAAACGAACAC
118887 GAACATAAACGAACA
1 GAACATAAACGAACA
118902 TAAACGTTGG
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 47 1.00
ACGTcount: A:0.57, C:0.24, G:0.13, T:0.06
Consensus pattern (16 bp):
GAACATAAACGAACAC
Found at i:119986 original size:14 final size:14
Alignment explanation
Indices: 119969--119998 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
119959 TGAACATAAC
119969 CGAACATAACCGAA
1 CGAACATAACCGAA
119983 CGAACATAACCGAA
1 CGAACATAACCGAA
119997 CG
1 CG
119999 TTCACGAACG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.47, C:0.30, G:0.17, T:0.07
Consensus pattern (14 bp):
CGAACATAACCGAA
Found at i:125950 original size:4 final size:4
Alignment explanation
Indices: 125943--125973 Score: 53
Period size: 4 Copynumber: 7.8 Consensus size: 4
125933 TTCAACAATT
*
125943 CAAA CAAA CAAA CAAA CAAA CAAA AAAA CAA
1 CAAA CAAA CAAA CAAA CAAA CAAA CAAA CAA
125974 CTTTAACTTC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.77, C:0.23, G:0.00, T:0.00
Consensus pattern (4 bp):
CAAA
Found at i:127918 original size:116 final size:113
Alignment explanation
Indices: 127652--127983 Score: 486
Period size: 116 Copynumber: 2.9 Consensus size: 113
127642 ACTCATACTA
*
127652 AATAGCGATAGATATTGAACATACCCATATCGACTTGTATTCGTATCTGATACTCATTCTAAAGA
1 AATAGTGATAGATATTGAACATACCCATATCGACTTGTATTCGTATCTGATACTCATTCTAAAGA
*
127717 TTAAGTAGTTATAGGTACTGAACATACCATATCGACTTATATTCAGAT
66 TTAAGTAGTTATAGATACTGAACATACCATATCGACTTATATTCAGAT
127765 AATAGTGATAGATATTGAACATACCCATATCGACTTGTATTCGTATCTGATACTCATTCTAAAGA
1 AATAGTGATAGATATTGAACATACCCATATCGACTTGTATTCGTATCTGATACTCATTCTAAAGA
*
127830 TTAAGTAGTACTGATAGATACTGAACATACCATATCTACTTATATTCAGAT
66 TTAAGTAGT--T-ATAGATACTGAACATACCATATCGACTTATATTCAGAT
* * * * * ** *
127881 AATAGTGATAGACATTGAACATACCCATATCGCCTTGTATTCGTATCCGATGCTTATAGTAGAGA
1 AATAGTGATAGATATTGAACATACCCATATCGACTTGTATTCGTATCTGATACTCATTCTAAAGA
* *
127946 CTT-AGTAGTGATAGATATTGAACATACCCAATATCGAC
66 -TTAAGTAGTTATAGATACTGAACATA-CC-ATATCGAC
127984 CTGTATTTGT
Statistics
Matches: 199, Mismatches: 14, Indels: 10
0.89 0.06 0.04
Matches are distributed among these distances:
113 88 0.44
114 2 0.01
115 8 0.04
116 99 0.50
117 2 0.01
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33
Consensus pattern (113 bp):
AATAGTGATAGATATTGAACATACCCATATCGACTTGTATTCGTATCTGATACTCATTCTAAAGA
TTAAGTAGTTATAGATACTGAACATACCATATCGACTTATATTCAGAT
Found at i:128015 original size:69 final size:68
Alignment explanation
Indices: 127880--128023 Score: 200
Period size: 69 Copynumber: 2.1 Consensus size: 68
127870 TATATTCAGA
* *
127880 TAATAGTGATAGACATTGAACATACCCATATCGCCTTGTATTCGTATCCGATGCTTATAGTAGAG
1 TAATAGTGATAGACATTGAACATACCCATATCGCCTTGTATTCGTATCCGATACTCATAGTAGAG
127945 ACT
66 ACT
* * * * *
127948 TAGTAGTGATAGATATTGAACATACCCAATATCGACC-TGTATTTGTATCTGATACTCATATTAG
1 TAATAGTGATAGACATTGAACATACCC-ATATCG-CCTTGTATTCGTATCCGATACTCATAGTAG
128012 AGACT
64 AGACT
128017 TAATAGT
1 TAATAGT
128024 AGGGGTGAAT
Statistics
Matches: 66, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
68 25 0.38
69 39 0.59
70 2 0.03
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.34
Consensus pattern (68 bp):
TAATAGTGATAGACATTGAACATACCCATATCGCCTTGTATTCGTATCCGATACTCATAGTAGAG
ACT
Found at i:130784 original size:2 final size:2
Alignment explanation
Indices: 130739--130764 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
130729 ATGTATATTA
130739 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
130765 GAAGTGTCAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:141356 original size:24 final size:24
Alignment explanation
Indices: 141285--141356 Score: 62
Period size: 24 Copynumber: 3.0 Consensus size: 24
141275 TCTAAACCCC
141285 AAATTCCAAAGTAATTCAATTT--
1 AAATTCCAAAGTAATTCAATTTCA
* *
141307 -TATTCTAAATAGTAAATTC-ATGTTCA
1 AAATTC-CAA-AGT-AATTCAAT-TTCA
141333 AAATTCCAAAGTAATTCAATTTCA
1 AAATTCCAAAGTAATTCAATTTCA
141357 TTCTAAACCC
Statistics
Matches: 38, Mismatches: 4, Indels: 14
0.68 0.07 0.25
Matches are distributed among these distances:
21 4 0.11
22 2 0.05
23 5 0.13
24 16 0.42
25 5 0.13
26 2 0.05
27 4 0.11
ACGTcount: A:0.43, C:0.14, G:0.06, T:0.38
Consensus pattern (24 bp):
AAATTCCAAAGTAATTCAATTTCA
Found at i:141372 original size:35 final size:35
Alignment explanation
Indices: 141333--141407 Score: 114
Period size: 35 Copynumber: 2.1 Consensus size: 35
141323 TTCATGTTCA
* *
141333 AAATTCCAAAGTAATTCAATTTCATTCTAAACCCT
1 AAATTCCAAAATAATTCAATTACATTCTAAACCCT
* *
141368 AAATTTCAAAATAATTCAATTACATTCTAAACCTT
1 AAATTCCAAAATAATTCAATTACATTCTAAACCCT
141403 AAATT
1 AAATT
141408 GAAGTATTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.44, C:0.19, G:0.01, T:0.36
Consensus pattern (35 bp):
AAATTCCAAAATAATTCAATTACATTCTAAACCCT
Found at i:141478 original size:35 final size:35
Alignment explanation
Indices: 141403--141479 Score: 100
Period size: 35 Copynumber: 2.2 Consensus size: 35
141393 TCTAAACCTT
* *
141403 AAATTGAAGTATTTTAAAATTTGGGGTTTAGAATT
1 AAATTGAAGTATTTTAAAATTTAGGGTTTAGAATG
* * **
141438 TAATTGAATTATTTTGGAATTTAGGGTTTAGAATG
1 AAATTGAAGTATTTTAAAATTTAGGGTTTAGAATG
141473 AAATTGA
1 AAATTGA
141480 GGACTGTTTT
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.36, C:0.00, G:0.21, T:0.43
Consensus pattern (35 bp):
AAATTGAAGTATTTTAAAATTTAGGGTTTAGAATG
Found at i:154237 original size:12 final size:12
Alignment explanation
Indices: 154217--154286 Score: 97
Period size: 12 Copynumber: 5.8 Consensus size: 12
154207 TAAAAGCTTT
154217 GCCTGTTTAAAA
1 GCCTGTTTAAAA
*
154229 GCCTATTTAAAA
1 GCCTGTTTAAAA
*
154241 GCATGTTTAACAA
1 GCCTGTTTAA-AA
154254 -CCTGTTTAAAA
1 GCCTGTTTAAAA
154265 GCCTGTTTAAAA
1 GCCTGTTTAAAA
*
154277 ACCTGTTTAA
1 GCCTGTTTAA
154287 CAATAAACAT
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
11 2 0.04
12 47 0.92
13 2 0.04
ACGTcount: A:0.36, C:0.17, G:0.13, T:0.34
Consensus pattern (12 bp):
GCCTGTTTAAAA
Found at i:154265 original size:36 final size:36
Alignment explanation
Indices: 154218--154289 Score: 117
Period size: 36 Copynumber: 2.0 Consensus size: 36
154208 AAAAGCTTTG
*
154218 CCTGTTTAAAAGCCTATTTAAAAGCATGTTTAACAA
1 CCTGTTTAAAAGCCTATTTAAAAACATGTTTAACAA
* *
154254 CCTGTTTAAAAGCCTGTTTAAAAACCTGTTTAACAA
1 CCTGTTTAAAAGCCTATTTAAAAACATGTTTAACAA
154290 TAAACATTTA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.38, C:0.18, G:0.11, T:0.33
Consensus pattern (36 bp):
CCTGTTTAAAAGCCTATTTAAAAACATGTTTAACAA
Found at i:165927 original size:2 final size:2
Alignment explanation
Indices: 165920--165949 Score: 51
Period size: 2 Copynumber: 14.5 Consensus size: 2
165910 TGAATGAATA
165920 AG AG AG AG AG AG AG AG AG AG AG AG ATG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG A-G AG A
165950 CAGCCATTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 25 0.93
3 2 0.07
ACGTcount: A:0.50, C:0.00, G:0.47, T:0.03
Consensus pattern (2 bp):
AG
Found at i:175461 original size:18 final size:18
Alignment explanation
Indices: 175435--175469 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
175425 TCGAAAGGAC
*
175435 TGAAGTAAATGATAAGAT
1 TGAAGTAAATAATAAGAT
*
175453 TGAATTAAATAATAAGA
1 TGAAGTAAATAATAAGA
175470 CCGGATAGAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.54, C:0.00, G:0.17, T:0.29
Consensus pattern (18 bp):
TGAAGTAAATAATAAGAT
Found at i:181761 original size:12 final size:12
Alignment explanation
Indices: 181744--181768 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
181734 CTCGTCTACC
181744 TCTAACTTTCCA
1 TCTAACTTTCCA
181756 TCTAACTTTCCA
1 TCTAACTTTCCA
181768 T
1 T
181769 ATTCATCAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.32, G:0.00, T:0.44
Consensus pattern (12 bp):
TCTAACTTTCCA
Found at i:189761 original size:16 final size:16
Alignment explanation
Indices: 189718--189767 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 16
189708 TTGAAATATC
*
189718 AAAATAAAATAAGAAT
1 AAAATAAAATAAAAAT
* ***
189734 AGAATGGGATAAAAAT
1 AAAATAAAATAAAAAT
189750 AAAATAAAATAAAAAT
1 AAAATAAAATAAAAAT
189766 AA
1 AA
189768 TAAATGAATA
Statistics
Matches: 25, Mismatches: 9, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.72, C:0.00, G:0.10, T:0.18
Consensus pattern (16 bp):
AAAATAAAATAAAAAT
Found at i:190777 original size:21 final size:21
Alignment explanation
Indices: 190752--190797 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
190742 GCAATGCGAT
190752 CGATAATCGAAGTTCGCATTG
1 CGATAATCGAAGTTCGCATTG
* *
190773 CGATAGTCGAAGTTCGCGTTG
1 CGATAATCGAAGTTCGCATTG
190794 CGAT
1 CGAT
190798 TTATTCCAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (21 bp):
CGATAATCGAAGTTCGCATTG
Found at i:190826 original size:19 final size:19
Alignment explanation
Indices: 190770--190830 Score: 59
Period size: 21 Copynumber: 3.0 Consensus size: 19
190760 GAAGTTCGCA
* *
190770 TTGCGATAGTCGAAGTTCGCG
1 TTGCGATAGTCCAAATT--CG
*
190791 TTGCGATTTATTCCAAATTCG
1 TTGCGA--TAGTCCAAATTCG
190812 TTGCGATAGTCCAAATTCG
1 TTGCGATAGTCCAAATTCG
190831 CAACGACTGG
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
19 12 0.35
21 14 0.41
23 8 0.24
ACGTcount: A:0.23, C:0.20, G:0.23, T:0.34
Consensus pattern (19 bp):
TTGCGATAGTCCAAATTCG
Found at i:191079 original size:39 final size:39
Alignment explanation
Indices: 191025--191120 Score: 156
Period size: 39 Copynumber: 2.5 Consensus size: 39
191015 TTCTCAATAG
*
191025 TGTTTCCAAAACTATGTGGGATTGAACATTACCAACACT
1 TGTTTCCAATACTATGTGGGATTGAACATTACCAACACT
*
191064 TGTTTCCAATACTATGTGGGATTGAGCATTACCAACACT
1 TGTTTCCAATACTATGTGGGATTGAACATTACCAACACT
* *
191103 TGTTTCTAATACAATGTG
1 TGTTTCCAATACTATGTG
191121 ATTATTCAGG
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 53 1.00
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34
Consensus pattern (39 bp):
TGTTTCCAATACTATGTGGGATTGAACATTACCAACACT
Found at i:191423 original size:20 final size:20
Alignment explanation
Indices: 191398--191437 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
191388 ACTTCCTTGT
191398 TGAGTGATAGAGAACAAGGG
1 TGAGTGATAGAGAACAAGGG
191418 TGAGTGATAGAGAACAAGGG
1 TGAGTGATAGAGAACAAGGG
191438 GACTCTCGCG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.40, C:0.05, G:0.40, T:0.15
Consensus pattern (20 bp):
TGAGTGATAGAGAACAAGGG
Found at i:191531 original size:19 final size:19
Alignment explanation
Indices: 191507--191574 Score: 66
Period size: 21 Copynumber: 3.4 Consensus size: 19
191497 GTGTCGAAAT
*
191507 TTTGGAGTATCGCAACGAA
1 TTTGGAATATCGCAACGAA
191526 TTTGGAATAAATCGCAACGCGAA
1 TTTGGAAT--ATCGCAA--CGAA
*
191549 CTTT-GACTATCGCAACGAA
1 -TTTGGAATATCGCAACGAA
191568 TTTGGAA
1 TTTGGAA
191575 AAAATCGCAA
Statistics
Matches: 40, Mismatches: 3, Indels: 12
0.73 0.05 0.22
Matches are distributed among these distances:
18 3 0.08
19 13 0.32
21 14 0.35
23 7 0.17
24 3 0.08
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (19 bp):
TTTGGAATATCGCAACGAA
Found at i:191539 original size:21 final size:21
Alignment explanation
Indices: 191515--191586 Score: 78
Period size: 21 Copynumber: 3.4 Consensus size: 21
191505 ATTTTGGAGT
191515 ATCGCAACGAATTTGGAATAA
1 ATCGCAACGAATTTGGAATAA
*
191536 ATCGCAACGCGAACTTT-GACT--
1 ATCGCAA--CGAA-TTTGGAATAA
*
191557 ATCGCAACGAATTTGGAAAAA
1 ATCGCAACGAATTTGGAATAA
191578 ATCGCAACG
1 ATCGCAACG
191587 CGAACTTCGA
Statistics
Matches: 42, Mismatches: 3, Indels: 12
0.74 0.05 0.21
Matches are distributed among these distances:
18 3 0.07
19 6 0.14
21 23 0.55
23 7 0.17
24 3 0.07
ACGTcount: A:0.39, C:0.21, G:0.19, T:0.21
Consensus pattern (21 bp):
ATCGCAACGAATTTGGAATAA
Found at i:191573 original size:42 final size:42
Alignment explanation
Indices: 191514--191605 Score: 166
Period size: 42 Copynumber: 2.2 Consensus size: 42
191504 AATTTTGGAG
* *
191514 TATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTTGAC
1 TATCGCAACGAATTTGGAAAAAATCGCAACGCGAACTTCGAC
191556 TATCGCAACGAATTTGGAAAAAATCGCAACGCGAACTTCGAC
1 TATCGCAACGAATTTGGAAAAAATCGCAACGCGAACTTCGAC
191598 TATCGCAA
1 TATCGCAA
191606 TGCGAATATG
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.37, C:0.23, G:0.18, T:0.22
Consensus pattern (42 bp):
TATCGCAACGAATTTGGAAAAAATCGCAACGCGAACTTCGAC
Found at i:191602 original size:21 final size:21
Alignment explanation
Indices: 191536--191611 Score: 66
Period size: 21 Copynumber: 3.6 Consensus size: 21
191526 TTTGGAATAA
*
191536 ATCGCAACGCGAACTTTGACT
1 ATCGCAACGCGAACTTCGACT
* * **
191557 ATCGCAA--CGAATTTGGAAAAA
1 ATCGCAACGCGAACTTCG--ACT
191578 ATCGCAACGCGAACTTCGACT
1 ATCGCAACGCGAACTTCGACT
*
191599 ATCGCAATGCGAA
1 ATCGCAACGCGAA
191612 TATGTAAATC
Statistics
Matches: 42, Mismatches: 9, Indels: 8
0.71 0.15 0.14
Matches are distributed among these distances:
19 7 0.17
21 28 0.67
23 7 0.17
ACGTcount: A:0.36, C:0.25, G:0.20, T:0.20
Consensus pattern (21 bp):
ATCGCAACGCGAACTTCGACT
Found at i:191682 original size:90 final size:91
Alignment explanation
Indices: 191565--191745 Score: 244
Period size: 90 Copynumber: 2.0 Consensus size: 91
191555 CTATCGCAAC
191565 GAATTTGGAAAAAATCGCAACGCGAACTTCGACTATCGCAATGCGAATATGTA-A-A-TCGCAAT
1 GAATTTGG-AAAAATCGCAACGCGAACTTCGACTATCGCAATGCG-AT-T-TACATATTCGCAAT
* **
191627 GCGATAGTCGAAGTTCGTGTTGCGATAGTT
62 GCGATAGTCCAAGTTCGCATTGCGATAGTT
* * *
191657 GAATTTGG-AAAATCGCAATGCGAACTTCGACTATCGCATTGCGATTTACATATTCGCATTGCGA
1 GAATTTGGAAAAATCGCAACGCGAACTTCGACTATCGCAATGCGATTTACATATTCGCAATGCGA
191721 TAGTCCAAGTTCGCATTGCGATAGT
66 TAGTCCAAGTTCGCATTGCGATAGT
191746 CGAAGTTCGC
Statistics
Matches: 80, Mismatches: 6, Indels: 8
0.85 0.06 0.09
Matches are distributed among these distances:
87 2 0.03
88 2 0.03
89 3 0.04
90 65 0.81
92 8 0.10
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (91 bp):
GAATTTGGAAAAATCGCAACGCGAACTTCGACTATCGCAATGCGATTTACATATTCGCAATGCGA
TAGTCCAAGTTCGCATTGCGATAGTT
Found at i:191735 original size:21 final size:21
Alignment explanation
Indices: 191709--191755 Score: 85
Period size: 21 Copynumber: 2.2 Consensus size: 21
191699 GATTTACATA
191709 TTCGCATTGCGATAGTCCAAG
1 TTCGCATTGCGATAGTCCAAG
*
191730 TTCGCATTGCGATAGTCGAAG
1 TTCGCATTGCGATAGTCCAAG
191751 TTCGC
1 TTCGC
191756 GTAGCGAATC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.21, C:0.23, G:0.26, T:0.30
Consensus pattern (21 bp):
TTCGCATTGCGATAGTCCAAG
Found at i:191762 original size:21 final size:21
Alignment explanation
Indices: 191709--191762 Score: 72
Period size: 21 Copynumber: 2.6 Consensus size: 21
191699 GATTTACATA
*
191709 TTCGCATTGCGATAGTCCAAG
1 TTCGCATAGCGATAGTCCAAG
* *
191730 TTCGCATTGCGATAGTCGAAG
1 TTCGCATAGCGATAGTCCAAG
*
191751 TTCGCGTAGCGA
1 TTCGCATAGCGA
191763 ATCTGGAAAC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (21 bp):
TTCGCATAGCGATAGTCCAAG
Found at i:196514 original size:23 final size:22
Alignment explanation
Indices: 196483--196527 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 22
196473 GTTTTTAAAT
*
196483 TAAATTTATTTTATAAAAGATAC
1 TAAAATTATTTTATAAAA-ATAC
*
196506 TAAAATTATTTTTTAAAAATAC
1 TAAAATTATTTTATAAAAATAC
196528 AACTTGAGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 4 0.20
23 16 0.80
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.44
Consensus pattern (22 bp):
TAAAATTATTTTATAAAAATAC
Found at i:196783 original size:15 final size:16
Alignment explanation
Indices: 196763--196800 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
196753 TTTATTTCAT
*
196763 AATGATT-AAGTCCTG
1 AATGATTAAAATCCTG
*
196778 AATGATTAAAATGCTG
1 AATGATTAAAATCCTG
196794 AATGATT
1 AATGATT
196801 CAGAGGATCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 7 0.35
16 13 0.65
ACGTcount: A:0.39, C:0.08, G:0.18, T:0.34
Consensus pattern (16 bp):
AATGATTAAAATCCTG
Found at i:202432 original size:21 final size:20
Alignment explanation
Indices: 202406--202451 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 20
202396 ATAATTATTT
202406 AAAAAATTAAATAAAAATACA
1 AAAAAATTAAATAAAAA-ACA
* *
202427 AAAAAATTTAATAAAAAATA
1 AAAAAATTAAATAAAAAACA
202447 AAAAA
1 AAAAA
202452 TAAAATTAGG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 7 0.30
21 16 0.70
ACGTcount: A:0.78, C:0.02, G:0.00, T:0.20
Consensus pattern (20 bp):
AAAAAATTAAATAAAAAACA
Found at i:215467 original size:21 final size:21
Alignment explanation
Indices: 215433--215479 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 21
215423 TACCGAAATA
*
215433 TTATTATTTTTATCGGTTTTG
1 TTATTATTTTTATCGATTTTG
215454 TTATT-TTTTCTATCGATTTTG
1 TTATTATTTT-TATCGATTTTG
215475 TTATT
1 TTATT
215480 GTTGGCCACT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 4 0.17
21 20 0.83
ACGTcount: A:0.15, C:0.06, G:0.11, T:0.68
Consensus pattern (21 bp):
TTATTATTTTTATCGATTTTG
Found at i:222387 original size:21 final size:19
Alignment explanation
Indices: 222353--222392 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 19
222343 TGTTTACTTA
222353 ATATCTTAAATTGAGAAAAT
1 ATATCTTAAATTGA-AAAAT
*
222373 ATATCATTGAATTGAAAAAT
1 ATATC-TTAAATTGAAAAAT
222393 TGAATCAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.50, C:0.05, G:0.10, T:0.35
Consensus pattern (19 bp):
ATATCTTAAATTGAAAAAT
Found at i:227041 original size:46 final size:46
Alignment explanation
Indices: 226974--227065 Score: 184
Period size: 46 Copynumber: 2.0 Consensus size: 46
226964 CCAACATCGA
226974 TCTCTAATTATATAATATAGAGATGGATCGAGAGGACCACTGGGGT
1 TCTCTAATTATATAATATAGAGATGGATCGAGAGGACCACTGGGGT
227020 TCTCTAATTATATAATATAGAGATGGATCGAGAGGACCACTGGGGT
1 TCTCTAATTATATAATATAGAGATGGATCGAGAGGACCACTGGGGT
227066 AGTCGTTCCC
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.33, C:0.13, G:0.26, T:0.28
Consensus pattern (46 bp):
TCTCTAATTATATAATATAGAGATGGATCGAGAGGACCACTGGGGT
Found at i:245057 original size:29 final size:28
Alignment explanation
Indices: 245004--245058 Score: 67
Period size: 28 Copynumber: 1.9 Consensus size: 28
244994 GAGCTACTCG
*
245004 AAAAAATAATATACTAAAATTTTAATTA
1 AAAAAATAATATACTAAAATATTAATTA
*
245032 AAAAAATAA-ATTATTAATAATATTAAT
1 AAAAAATAATA-TACTAA-AATATTAAT
245059 ATTTATGTGT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
27 1 0.04
28 14 0.61
29 8 0.35
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (28 bp):
AAAAAATAATATACTAAAATATTAATTA
Found at i:246598 original size:41 final size:40
Alignment explanation
Indices: 246536--246660 Score: 99
Period size: 41 Copynumber: 3.3 Consensus size: 40
246526 TGGGCCAATA
*
246536 ATAGTGGCGTTTGTTTGATAAACGCCGCAATAGGTCCATCT
1 ATAGTGGCGTTT-TTTAATAAACGCCGCAATAGGTCCATCT
*
246577 ATAGTGGCGTTTTTTCAATAAA-GCTGC-A-A----CA---
1 ATAGTGGCGTTTTTT-AATAAACGCCGCAATAGGTCCATCT
* * * *
246608 ATAGTGACGATTTTTAAAAAAACACCGCAATAGGTCCATCT
1 ATAGTGGCG-TTTTTTAATAAACGCCGCAATAGGTCCATCT
246649 ATAGTGGCGTTT
1 ATAGTGGCGTTT
246661 ATTGGAAAAA
Statistics
Matches: 64, Mismatches: 8, Indels: 25
0.66 0.08 0.26
Matches are distributed among these distances:
31 13 0.20
32 8 0.12
33 1 0.02
34 3 0.05
38 3 0.05
39 1 0.02
40 10 0.16
41 25 0.39
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.31
Consensus pattern (40 bp):
ATAGTGGCGTTTTTTAATAAACGCCGCAATAGGTCCATCT
Found at i:247266 original size:60 final size:59
Alignment explanation
Indices: 247135--247308 Score: 165
Period size: 60 Copynumber: 2.9 Consensus size: 59
247125 AAGAATGATT
* * * * * *
247135 TTCATTTTAAAGTGGTTCCT-AAAATTTTAAATATTCCAATTTCATCCCAAAACTATGGC
1 TTCATTTTAAATTAG-TCCTCAAAATTTTGAATATTTCAATTTCATCCCCAAACTATGCC
* * *
247194 TATCGTTCTAAATTAGTCCTCAAACTTTTGAATATTTCAATTTCATCCCCAAACTATGACC
1 T-TCATTTTAAATTAGTCCTCAAAATTTTGAATATTTCAATTTCATCCCCAAACTATG-CC
* ** *
247255 TTCATTTTAAATTAGTCTTCAATTTTTTTGAACA-TTCTAATTTCAT-CCCAAACT
1 TTCATTTTAAATTAGTCCTCAA-AATTTTGAATATTTC-AATTTCATCCCCAAACT
247309 CTATGTATAT
Statistics
Matches: 95, Mismatches: 15, Indels: 9
0.80 0.13 0.08
Matches are distributed among these distances:
59 5 0.05
60 72 0.76
61 18 0.19
ACGTcount: A:0.32, C:0.21, G:0.06, T:0.41
Consensus pattern (59 bp):
TTCATTTTAAATTAGTCCTCAAAATTTTGAATATTTCAATTTCATCCCCAAACTATGCC
Found at i:257780 original size:2 final size:2
Alignment explanation
Indices: 257773--257805 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
257763 TATGAAGGCA
257773 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
257806 CAATCAATAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:259371 original size:22 final size:20
Alignment explanation
Indices: 259334--259405 Score: 62
Period size: 22 Copynumber: 3.6 Consensus size: 20
259324 GGAATGAATG
259334 AAAT-AATAATAA-AATATCAA
1 AAATGAATAA-AAGAATAT-AA
259354 AAATGAAATAAAAGAATATAA
1 AAATG-AATAAAAGAATATAA
*
259375 TAAATG-AT-AAAGAATATGA
1 -AAATGAATAAAAGAATATAA
*
259394 AAATGTATAAAA
1 AAATGAATAAAA
259406 CGATTGCCAT
Statistics
Matches: 45, Mismatches: 1, Indels: 12
0.78 0.02 0.21
Matches are distributed among these distances:
18 5 0.11
19 12 0.27
20 9 0.20
21 4 0.09
22 15 0.33
ACGTcount: A:0.67, C:0.01, G:0.08, T:0.24
Consensus pattern (20 bp):
AAATGAATAAAAGAATATAA
Found at i:259388 original size:19 final size:19
Alignment explanation
Indices: 259364--259404 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
259354 AAATGAAATA
259364 AAAGAATATAATAAATG-AT
1 AAAGAATATAA-AAATGTAT
*
259383 AAAGAATATGAAAATGTAT
1 AAAGAATATAAAAATGTAT
259402 AAA
1 AAA
259405 ACGATTGCCA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 5 0.25
19 15 0.75
ACGTcount: A:0.63, C:0.00, G:0.12, T:0.24
Consensus pattern (19 bp):
AAAGAATATAAAAATGTAT
Found at i:261887 original size:4 final size:4
Alignment explanation
Indices: 261878--261921 Score: 54
Period size: 4 Copynumber: 10.8 Consensus size: 4
261868 CTTTATCTCA
*
261878 ATTT ATTT ATTTT ATTT ATTT GTTT ATTT ATTT -TTT ATCTT ATT
1 ATTT ATTT A-TTT ATTT ATTT ATTT ATTT ATTT ATTT AT-TT ATT
261922 ATACTTCTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
3 3 0.09
4 24 0.69
5 8 0.23
ACGTcount: A:0.20, C:0.02, G:0.02, T:0.75
Consensus pattern (4 bp):
ATTT
Found at i:263448 original size:18 final size:18
Alignment explanation
Indices: 263407--263442 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
263397 CGGTTAAATG
263407 ACTAGGGGTATCGATACC
1 ACTAGGGGTATCGATACC
*
263425 ACTAGGGGTATCGGTACC
1 ACTAGGGGTATCGATACC
263443 CATAGGACAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.25, C:0.22, G:0.31, T:0.22
Consensus pattern (18 bp):
ACTAGGGGTATCGATACC
Found at i:263515 original size:54 final size:54
Alignment explanation
Indices: 263427--263549 Score: 194
Period size: 54 Copynumber: 2.3 Consensus size: 54
263417 TCGATACCAC
*
263427 TAGGGGTATCGGTACCCATAGGACATTCTATTTTTCTCGGAGCCAAAACTT-GCA
1 TAGGGGTATCGGTACCCATAGGACACTCTATTTTTCTCGGAGCCAAAA-TTGGCA
* * *
263481 TAGGGGTATCGGTACCCTTTGGACACTCTGTTTTTCTCGGAGCCAAAATTGGCA
1 TAGGGGTATCGGTACCCATAGGACACTCTATTTTTCTCGGAGCCAAAATTGGCA
263535 TAGGGGTATCGGTAC
1 TAGGGGTATCGGTAC
263550 ACCCTATGAG
Statistics
Matches: 64, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
53 2 0.03
54 62 0.97
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.30
Consensus pattern (54 bp):
TAGGGGTATCGGTACCCATAGGACACTCTATTTTTCTCGGAGCCAAAATTGGCA
Found at i:266204 original size:23 final size:22
Alignment explanation
Indices: 266174--266241 Score: 79
Period size: 21 Copynumber: 3.1 Consensus size: 22
266164 TCGATACCCC
266174 TACACATTCAAAGGGGGTATCGA
1 TACACATTC-AAGGGGGTATCGA
*
266197 TACACATTGAA-GGGGTATCGA
1 TACACATTCAAGGGGGTATCGA
*
266218 TAC-C-TAGCAAGGGGGTATCGA
1 TACACAT-TCAAGGGGGTATCGA
266239 TAC
1 TAC
266242 CTGGTGCACA
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
19 1 0.03
20 3 0.08
21 26 0.65
22 2 0.05
23 8 0.20
ACGTcount: A:0.32, C:0.18, G:0.28, T:0.22
Consensus pattern (22 bp):
TACACATTCAAGGGGGTATCGA
Found at i:283612 original size:27 final size:27
Alignment explanation
Indices: 283567--283647 Score: 67
Period size: 27 Copynumber: 3.0 Consensus size: 27
283557 AAAGTAGTCA
***
283567 ACGAAAATAGCATTTTTTTTCAAAATT
1 ACGAAAATAGCACCATTTTTCAAAATT
**
283594 ACGAAAATAGCACCATTTTAAAATTAATT
1 ACGAAAATAGCACCATTTTTCAA--AATT
*
283623 ATC-AATATAGCACCA-TTTTCAAAAT
1 A-CGAAAATAGCACCATTTTTCAAAAT
283648 ATTTACTAAA
Statistics
Matches: 43, Mismatches: 8, Indels: 7
0.74 0.14 0.12
Matches are distributed among these distances:
26 3 0.07
27 18 0.42
28 5 0.12
29 16 0.37
30 1 0.02
ACGTcount: A:0.44, C:0.15, G:0.06, T:0.35
Consensus pattern (27 bp):
ACGAAAATAGCACCATTTTTCAAAATT
Found at i:283807 original size:21 final size:22
Alignment explanation
Indices: 283774--283814 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
283764 AAATGTCACT
283774 CGGTCAAAAGTCAAC-AGTCAA
1 CGGTCAAAAGTCAACGAGTCAA
**
283795 CGGTCAACGGTCAACGAGTC
1 CGGTCAAAAGTCAACGAGTC
283815 GGGTCAACGG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.34, C:0.27, G:0.24, T:0.15
Consensus pattern (22 bp):
CGGTCAAAAGTCAACGAGTCAA
Found at i:283821 original size:13 final size:13
Alignment explanation
Indices: 283803--283834 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
283793 AACGGTCAAC
283803 GGTCAACGAGTCG
1 GGTCAACGAGTCG
*
283816 GGTCAACGGGTCG
1 GGTCAACGAGTCG
283829 GGTCAA
1 GGTCAA
283835 AACCGGTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.22, C:0.22, G:0.41, T:0.16
Consensus pattern (13 bp):
GGTCAACGAGTCG
Found at i:299462 original size:4 final size:4
Alignment explanation
Indices: 299453--299544 Score: 86
Period size: 4 Copynumber: 23.8 Consensus size: 4
299443 TTCCTTCATT
* * *
299453 TTTC TTTC TTTC -TT- TTTC TTTC TTTT TTTC TTTT TATTT TTTC TTTC
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC T-TTC TTTC TTTC
* *
299500 TTTT TATTT TTTC TTTC TTTC TTT- TTTC TTTC TTT- TTTC -TTC TTT
1 TTTC T-TTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTT
299545 TCAACATGAA
Statistics
Matches: 75, Mismatches: 6, Indels: 14
0.79 0.06 0.15
Matches are distributed among these distances:
3 13 0.17
4 54 0.72
5 8 0.11
ACGTcount: A:0.02, C:0.16, G:0.00, T:0.82
Consensus pattern (4 bp):
TTTC
Found at i:299469 original size:25 final size:24
Alignment explanation
Indices: 299432--299544 Score: 117
Period size: 25 Copynumber: 4.7 Consensus size: 24
299422 CTTCTTTCAA
* *
299432 TTTCTTTTCTTTTCCTTCATTTTTC
1 TTTCTTTT-TTTTCTTTCTTTTTTC
299457 TTTCTTTCTTTTTCTTTCTTTTTTTC
1 TTTCTTT-TTTTTCTTTC-TTTTTTC
299483 TTT-TTATTTTTTCTTTC-TTTTT-
1 TTTCTT-TTTTTTCTTTCTTTTTTC
* *
299505 ATT-TTTTCTTTCTTTCTTTTTTC
1 TTTCTTTTTTTTCTTTCTTTTTTC
299528 TTTCTTTTTTCTTCTTT
1 TTTCTTTTTT-TTCTTT
299545 TCAACATGAA
Statistics
Matches: 75, Mismatches: 6, Indels: 14
0.79 0.06 0.15
Matches are distributed among these distances:
21 10 0.13
22 9 0.12
23 7 0.09
24 5 0.07
25 33 0.44
26 11 0.15
ACGTcount: A:0.03, C:0.18, G:0.00, T:0.80
Consensus pattern (24 bp):
TTTCTTTTTTTTCTTTCTTTTTTC
Found at i:299499 original size:17 final size:17
Alignment explanation
Indices: 299457--299536 Score: 110
Period size: 17 Copynumber: 4.8 Consensus size: 17
299447 TTCATTTTTC
*
299457 TTTCTTTCTTTTTCTTT
1 TTTCTTTCTTTTTATTT
*
299474 CTTTTTTTCTTTTTATTT
1 -TTTCTTTCTTTTTATTT
299492 TTTCTTTCTTTTTATTT
1 TTTCTTTCTTTTTATTT
*
299509 TTTCTTTC--TTTCTTT
1 TTTCTTTCTTTTTATTT
299524 TTTCTTTCTTTTT
1 TTTCTTTCTTTTT
299537 TCTTCTTTTC
Statistics
Matches: 56, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
15 14 0.25
17 27 0.48
18 15 0.27
ACGTcount: A:0.03, C:0.15, G:0.00, T:0.82
Consensus pattern (17 bp):
TTTCTTTCTTTTTATTT
Found at i:299511 original size:42 final size:42
Alignment explanation
Indices: 299465--299545 Score: 121
Period size: 42 Copynumber: 1.9 Consensus size: 42
299455 TCTTTCTTTC
299465 TTTTTCTTTCTTT-TTTTCTT-TTTATTTTTTCTTTCTTTTTAT
1 TTTTTCTTTCTTTCTTTT-TTCTTTATTTTTTC-TTCTTTTTAT
*
299507 TTTTTCTTTCTTTCTTTTTTCTTTCTTTTTTCTTCTTTT
1 TTTTTCTTTCTTTCTTTTTTCTTTATTTTTTCTTCTTTT
299546 CAACATGAAT
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
42 22 0.61
43 14 0.39
ACGTcount: A:0.02, C:0.15, G:0.00, T:0.83
Consensus pattern (42 bp):
TTTTTCTTTCTTTCTTTTTTCTTTATTTTTTCTTCTTTTTAT
Found at i:300392 original size:25 final size:25
Alignment explanation
Indices: 300364--300433 Score: 85
Period size: 25 Copynumber: 2.9 Consensus size: 25
300354 TAATAATAAC
300364 ATGTTATTAATTCAT-TTGGCATTGT
1 ATGTTATTAATTCATGTT-GCATTGT
*
300389 ATGTTATTAATTCATGTTGCATTGC
1 ATGTTATTAATTCATGTTGCATTGT
*
300414 A---TATTAATTCATGTTACATT
1 ATGTTATTAATTCATGTTGCATT
300434 AGGTGTTAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
22 18 0.43
25 22 0.52
26 2 0.05
ACGTcount: A:0.27, C:0.10, G:0.13, T:0.50
Consensus pattern (25 bp):
ATGTTATTAATTCATGTTGCATTGT
Found at i:314283 original size:20 final size:21
Alignment explanation
Indices: 314254--314296 Score: 79
Period size: 20 Copynumber: 2.1 Consensus size: 21
314244 CCGAGCAGCA
314254 AAAAACAATACTTGGTGAACG
1 AAAAACAATACTTGGTGAACG
314275 AAAAA-AATACTTGGTGAACG
1 AAAAACAATACTTGGTGAACG
314295 AA
1 AA
314297 TTTATCCCCT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 17 0.77
21 5 0.23
ACGTcount: A:0.51, C:0.12, G:0.19, T:0.19
Consensus pattern (21 bp):
AAAAACAATACTTGGTGAACG
Found at i:315008 original size:16 final size:15
Alignment explanation
Indices: 314987--315020 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
314977 AATTTGATTC
314987 CAATTAATTATATAAA
1 CAATTAATTATA-AAA
*
315003 CAATTATTTATAAAA
1 CAATTAATTATAAAA
315018 CAA
1 CAA
315021 AATCTACACA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.56, C:0.09, G:0.00, T:0.35
Consensus pattern (15 bp):
CAATTAATTATAAAA
Found at i:323655 original size:18 final size:18
Alignment explanation
Indices: 323621--323654 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
323611 ATCATTAACT
*
323621 AAATATGAATAATAAAAC
1 AAATATGAAAAATAAAAC
323639 AAATAT-AAAAATAAAA
1 AAATATGAAAAATAAAA
323655 AATAAAAATG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.74, C:0.03, G:0.03, T:0.21
Consensus pattern (18 bp):
AAATATGAAAAATAAAAC
Found at i:327161 original size:16 final size:15
Alignment explanation
Indices: 327131--327269 Score: 149
Period size: 16 Copynumber: 9.0 Consensus size: 15
327121 TTTCCTTCAT
327131 TTTTCTTTC-TTTTTC
1 TTTT-TTTCTTTTTTC
327146 TTTCTTTTCTTTTTTC
1 TTT-TTTTCTTTTTTC
327162 TTTTTTTTCTTTTTTTC
1 -TTTTTTTC-TTTTTTC
*
327179 TTTTTTCTTTTTTTTC
1 TTTTTT-TCTTTTTTC
327195 TTTTTTTCTTTTTTC
1 TTTTTTTCTTTTTTC
*
327210 TCTTTTTTCTCTTTTC
1 T-TTTTTTCTTTTTTC
* *
327226 TCTTTTGTCTTTTGTC
1 T-TTTTTTCTTTTTTC
*
327242 -TTTTTTCTTTTGTC
1 TTTTTTTCTTTTTTC
327256 -TTTTTTCTTTTTTC
1 TTTTTTTCTTTTTTC
327270 AACATGAATA
Statistics
Matches: 110, Mismatches: 8, Indels: 13
0.84 0.06 0.10
Matches are distributed among these distances:
14 26 0.24
15 16 0.15
16 57 0.52
17 11 0.10
ACGTcount: A:0.00, C:0.17, G:0.02, T:0.81
Consensus pattern (15 bp):
TTTTTTTCTTTTTTC
Found at i:327162 original size:7 final size:7
Alignment explanation
Indices: 327136--327269 Score: 126
Period size: 7 Copynumber: 17.6 Consensus size: 7
327126 TTCATTTTTC
327136 TTTC-TT
1 TTTCTTT
327142 TTTCTTTCT
1 TTTC-TT-T
327151 TTTCTTT
1 TTTCTTT
327158 TTTCTTTTT
1 TTTC--TTT
327167 TTTCTTTT
1 TTTC-TTT
327175 TTTCTTT
1 TTTCTTT
327182 TTTCTTTTT
1 TTTC--TTT
327191 TTTCTTTT
1 TTTC-TTT
327199 TTTCTTTT
1 TTTC-TTT
327207 TTCTCTTT
1 TT-TCTTT
327215 TTTCTCTT
1 TTTCT-TT
327223 TTCTCTTT
1 TT-TCTTT
*
327231 TGTCTTT
1 TTTCTTT
*
327238 TGTCTTT
1 TTTCTTT
327245 TTTCTTT
1 TTTCTTT
*
327252 TGTCTTT
1 TTTCTTT
327259 TTTCTTT
1 TTTCTTT
327266 TTTC
1 TTTC
327270 AACATGAATA
Statistics
Matches: 114, Mismatches: 4, Indels: 19
0.83 0.03 0.14
Matches are distributed among these distances:
6 4 0.04
7 49 0.43
8 37 0.32
9 24 0.21
ACGTcount: A:0.00, C:0.16, G:0.02, T:0.81
Consensus pattern (7 bp):
TTTCTTT
Found at i:327217 original size:1 final size:1
Alignment explanation
Indices: 327130--327208 Score: 59
Period size: 1 Copynumber: 79.0 Consensus size: 1
327120 TTTTCCTTCA
* * * * * * * * * *
327130 TTTTTCTTTCTTTTTCTTTCTTTTCTTTTTTCTTTTTTTTCTTTTTTTCTTTTTTCTTTTTTTTC
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
*
327195 TTTTTTTCTTTTTT
1 TTTTTTTTTTTTTT
327209 CTCTTTTTTC
Statistics
Matches: 56, Mismatches: 22, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
1 56 1.00
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (1 bp):
T
Found at i:328126 original size:25 final size:26
Alignment explanation
Indices: 328080--328142 Score: 82
Period size: 25 Copynumber: 2.6 Consensus size: 26
328070 AAATAATAAT
*
328080 ATGTTATTAATTCAT-TTGGCATTGC
1 ATGTTATTAATTCATGATGGCATTGC
328105 ATGTTATTAATTCATGAT-GCATTGC
1 ATGTTATTAATTCATGATGGCATTGC
328130 A---TATTAATTCATG
1 ATGTTATTAATTCATG
328143 TTACATTAGG
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
22 12 0.33
25 23 0.64
26 1 0.03
ACGTcount: A:0.29, C:0.11, G:0.14, T:0.46
Consensus pattern (26 bp):
ATGTTATTAATTCATGATGGCATTGC
Found at i:338850 original size:42 final size:41
Alignment explanation
Indices: 338803--339066 Score: 251
Period size: 42 Copynumber: 6.5 Consensus size: 41
338793 ATGCCCCTAA
*
338803 TTTTTACCTTTATAATTGAGGCTCTAATTCTTTTAATCTCAC
1 TTTTTACCTTTATAATTGAGGCCCTAATT-TTTTAATCTCAC
* * *
338845 TTTTTACCTTTACAATTGAGACCCTAATTCTCTTAATCTCAC
1 TTTTTACCTTTATAATTGAGGCCCTAATT-TTTTAATCTCAC
* *
338887 -TTTTACCTTTATAATTAAGACCCCTAATTTTTTCAATCGT-AC
1 TTTTTACCTTTATAATTGAG-GCCCTAATTTTTT-AATC-TCAC
* * *
338929 TTTTTACTTTTATAATTGAGGCTCCTAATTTTTCAATCTCGC
1 TTTTTACCTTTATAATTGAGGC-CCTAATTTTTTAATCTCAC
* * *
338971 TTTCTACATTTATAATTGAGGCCCCT-ACTTTTT--T-T-A-
1 TTTTTACCTTTATAATTGAGG-CCCTAATTTTTTAATCTCAC
* *
339007 --ATTACCTTTATAATTGAGACCCCTAATTTTTTCAATCTCAC
1 TTTTTACCTTTATAATTGAG-GCCCTAATTTTTT-AATCTCAC
339048 TTTTTACCTTTATAATTGA
1 TTTTTACCTTTATAATTGA
339067 TACCCCTAAT
Statistics
Matches: 181, Mismatches: 24, Indels: 33
0.76 0.10 0.14
Matches are distributed among these distances:
34 19 0.10
35 6 0.03
38 2 0.01
39 2 0.01
40 1 0.01
41 26 0.14
42 80 0.44
43 45 0.25
ACGTcount: A:0.25, C:0.21, G:0.06, T:0.47
Consensus pattern (41 bp):
TTTTTACCTTTATAATTGAGGCCCTAATTTTTTAATCTCAC
Found at i:338933 original size:126 final size:119
Alignment explanation
Indices: 338803--339066 Score: 327
Period size: 119 Copynumber: 2.2 Consensus size: 119
338793 ATGCCCCTAA
* * *
338803 TTTTTACCTTTATAATTGAGGCT-CTAATTCTTTTAATCTCACTTTTTACCTTTACAATTGA-GA
1 TTTTTACCTTTATAATTGAGGCTCCTAATT-TTTCAATCTCACTTTCTACATTTACAATTGAGGA
*
338866 CCCTAATTCTCTTAATCTCACTTTTACCTTTATAATTAAGACCCCTAATTTTTTCAATCGT-AC
65 CCCTAATT-T-TT--T-T-A--ATTACCTTTATAATTAAGACCCCTAATTTTTTCAATC-TCAC
* * * *
338929 TTTTTACTTTTATAATTGAGGCTCCTAATTTTTCAATCTCGCTTTCTACATTTATAATTGAGGCC
1 TTTTTACCTTTATAATTGAGGCTCCTAATTTTTCAATCTCACTTTCTACATTTACAATTGAGGAC
* *
338994 CCTACTTTTTTTAATTACCTTTATAATTGAGACCCCTAATTTTTTCAATCTCAC
66 CCTAATTTTTTTAATTACCTTTATAATTAAGACCCCTAATTTTTTCAATCTCAC
339048 TTTTTACCTTTATAATTGA
1 TTTTTACCTTTATAATTGA
339067 TACCCCTAAT
Statistics
Matches: 124, Mismatches: 11, Indels: 13
0.84 0.07 0.09
Matches are distributed among these distances:
118 1 0.01
119 55 0.44
121 1 0.01
122 1 0.01
123 1 0.01
125 2 0.02
126 49 0.40
127 14 0.11
ACGTcount: A:0.25, C:0.21, G:0.06, T:0.47
Consensus pattern (119 bp):
TTTTTACCTTTATAATTGAGGCTCCTAATTTTTCAATCTCACTTTCTACATTTACAATTGAGGAC
CCTAATTTTTTTAATTACCTTTATAATTAAGACCCCTAATTTTTTCAATCTCAC
Found at i:338944 original size:43 final size:43
Alignment explanation
Indices: 338941--339078 Score: 125
Period size: 43 Copynumber: 3.4 Consensus size: 43
338931 TTTACTTTTA
* * * * *
338941 TAATTGAGGCTCCTAA-TTTTTCAATCTCGCTTTCTACATTTA
1 TAATTGAGACCCCTAATTTTTTCAATCTCACTTTTTACCTTTA
* * *
338983 TAATTGAGGCCCCTACTTTTTTTAAT-T-AC------C-TTTA
1 TAATTGAGACCCCTAATTTTTTCAATCTCACTTTTTACCTTTA
339017 TAATTGAGACCCCTAATTTTTTCAATCTCACTTTTTACCTTTA
1 TAATTGAGACCCCTAATTTTTTCAATCTCACTTTTTACCTTTA
*
339060 TAATTGATACCCCTAATTT
1 TAATTGAGACCCCTAATTT
339079 AATAAATTTC
Statistics
Matches: 78, Mismatches: 8, Indels: 19
0.74 0.08 0.18
Matches are distributed among these distances:
34 27 0.35
35 2 0.03
36 2 0.03
41 1 0.01
42 16 0.21
43 30 0.38
ACGTcount: A:0.25, C:0.22, G:0.07, T:0.46
Consensus pattern (43 bp):
TAATTGAGACCCCTAATTTTTTCAATCTCACTTTTTACCTTTA
Done.