Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01004117.1 Hibiscus syriacus cultivar Beakdansim tig00009009_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2456583
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
File 3 of 9
Found at i:628064 original size:18 final size:18
Alignment explanation
Indices: 628030--628063 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
628020 ATCATTAACT
*
628030 AAATATGAATAATAAAAC
1 AAATATGAAAAATAAAAC
628048 AAATAT-AAAAATAAAA
1 AAATATGAAAAATAAAA
628064 AATAAAAATG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.74, C:0.03, G:0.03, T:0.21
Consensus pattern (18 bp):
AAATATGAAAAATAAAAC
Found at i:632178 original size:10 final size:10
Alignment explanation
Indices: 632165--632316 Score: 67
Period size: 10 Copynumber: 15.4 Consensus size: 10
632155 CTGCTTTCAA
632165 TTTCTTTTCT
1 TTTCTTTTCT
*
632175 TTTC-CTTCAT
1 TTTCTTTTC-T
632185 TTT-TCTTTCT
1 TTTCT-TTTCT
632195 TTT-TGTTTC-
1 TTTCT-TTTCT
632204 TTT-TTTTCTT
1 TTTCTTTTC-T
* *
632214 TTTATTTTAT
1 TTTCTTTTCT
632224 TCTCTCTTTT-T
1 T-T-TCTTTTCT
* *
632235 ATTCTATTCT
1 TTTCTTTTCT
632245 CTTT-TTTTC-
1 -TTTCTTTTCT
632254 TTT-TTTTCTT
1 TTTCTTTTC-T
632264 TTTCTTTT-T
1 TTTCTTTTCT
632273 TTTCTTTT-T
1 TTTCTTTTCT
*
632282 TCTTTTTTTCT
1 T-TTCTTTTCT
*
632293 TTTTTTTTCT
1 TTTCTTTTCT
632303 TTT-TTCTTCT
1 TTTCTT-TTCT
632313 TTTC
1 TTTC
632317 AACATGAATA
Statistics
Matches: 115, Mismatches: 10, Indels: 33
0.73 0.06 0.21
Matches are distributed among these distances:
8 12 0.10
9 25 0.22
10 56 0.49
11 17 0.15
12 5 0.04
ACGTcount: A:0.03, C:0.16, G:0.01, T:0.80
Consensus pattern (10 bp):
TTTCTTTTCT
Found at i:632205 original size:14 final size:13
Alignment explanation
Indices: 632186--632315 Score: 92
Period size: 14 Copynumber: 9.8 Consensus size: 13
632176 TTCCTTCATT
*
632186 TTTCTTTCTTTTTG
1 TTTCTTT-TTTTTC
632200 TTTC-TTTTTTTC
1 TTTCTTTTTTTTC
632212 TTT-TTATTTTATTC
1 TTTCTT-TTTT-TTC
* *
632226 TCTCTTTTTATTC
1 TTTCTTTTTTTTC
632239 TATTCTCTTTTTTTC
1 T-TTCT-TTTTTTTC
*
632254 TTTTTTTCTTTTTC
1 TTTCTTT-TTTTTC
632268 TTT-TTTTTCTTT-
1 TTTCTTTTT-TTTC
632280 TTTC-TTTTTTTC
1 TTTCTTTTTTTTC
*
632292 TTT-TTTTTTCTTT
1 TTTCTTTTTT-TTC
632305 TTTCTTCTTTT
1 TTTCTT-TTTT
632316 CAACATGAAT
Statistics
Matches: 95, Mismatches: 7, Indels: 27
0.74 0.05 0.21
Matches are distributed among these distances:
11 3 0.03
12 26 0.27
13 23 0.24
14 29 0.31
15 14 0.15
ACGTcount: A:0.03, C:0.15, G:0.01, T:0.82
Consensus pattern (13 bp):
TTTCTTTTTTTTC
Found at i:632213 original size:8 final size:8
Alignment explanation
Indices: 632185--632316 Score: 110
Period size: 8 Copynumber: 16.0 Consensus size: 8
632175 TTTCCTTCAT
632185 TTTTCTTTC
1 TTTT-TTTC
632194 TTTTTGTTTC
1 -TTTT-TTTC
632204 TTTTTTTC
1 TTTTTTTC
632212 TTTTTATT-
1 TTTTT-TTC
*
632220 TTATTCTCTC
1 TT-TT-TTTC
632230 TTTTTATTC
1 TTTTT-TTC
* *
632239 -TATTCTC
1 TTTTTTTC
632246 TTTTTTTC
1 TTTTTTTC
632254 TTTTTTTC
1 TTTTTTTC
*
632262 TTTTTCT-
1 TTTTTTTC
632269 TTTTTTTC
1 TTTTTTTC
632277 -TTTTTTC
1 TTTTTTTC
632284 TTTTTTTC
1 TTTTTTTC
*
632292 TTTTTTTT
1 TTTTTTTC
632300 TCTTTTTTC
1 T-TTTTTTC
*
632309 TTCTTTTC
1 TTTTTTTC
632317 AACATGAATA
Statistics
Matches: 101, Mismatches: 12, Indels: 20
0.76 0.09 0.15
Matches are distributed among these distances:
7 15 0.15
8 55 0.54
9 20 0.20
10 11 0.11
ACGTcount: A:0.03, C:0.15, G:0.01, T:0.81
Consensus pattern (8 bp):
TTTTTTTC
Found at i:632213 original size:18 final size:17
Alignment explanation
Indices: 632169--632315 Score: 99
Period size: 18 Copynumber: 8.5 Consensus size: 17
632159 TTTCAATTTC
*
632169 TTTTCTTTTCCTTCATTTT
1 TTTTCTTTT-TTTC-TTTT
632188 TCTTTCTTTTTGTT-TCTTT
1 T-TTTCTTTTT-TTCT-TTT
* *
632207 TTTTCTTTTTAT-TTTA
1 TTTTCTTTTTTTCTTTT
* * * *
632223 TTCTCTCTTTTTATTCTA
1 TTTTCTTTTTTTCTT-TT
*
632241 TTCTCTTTTTTTC-TTT
1 TTTTCTTTTTTTCTTTT
632257 TTTTC--TTTTTCTTTT
1 TTTTCTTTTTTTCTTTT
632272 TTTTC-TTTTTTCTTTT
1 TTTTCTTTTTTTCTTTT
*
632288 TTTCTTTTTTTTTCTTTT
1 TTT-TCTTTTTTTCTTTT
632306 TTCTTCTTTT
1 TT-TTCTTTT
632316 CAACATGAAT
Statistics
Matches: 106, Mismatches: 12, Indels: 21
0.76 0.09 0.15
Matches are distributed among these distances:
14 6 0.06
15 8 0.08
16 29 0.27
17 6 0.06
18 41 0.39
19 6 0.06
20 10 0.09
ACGTcount: A:0.03, C:0.16, G:0.01, T:0.80
Consensus pattern (17 bp):
TTTTCTTTTTTTCTTTT
Found at i:632250 original size:1 final size:1
Alignment explanation
Indices: 632246--632307 Score: 61
Period size: 1 Copynumber: 62.0 Consensus size: 1
632236 TTCTATTCTC
* * * * * * *
632246 TTTTTTTCTTTTTTTCTTTTTCTTTTTTTTCTTTTTTCTTTTTTTCTTTTTTTTTCTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
632308 CTTCTTTTCA
Statistics
Matches: 47, Mismatches: 14, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
1 47 1.00
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (1 bp):
T
Found at i:632296 original size:38 final size:38
Alignment explanation
Indices: 632169--632298 Score: 131
Period size: 38 Copynumber: 3.3 Consensus size: 38
632159 TTTCAATTTC
* * *
632169 TTTTCTTTTCCTTCATTTTTC-TTTCTTT-TTGTTTCTTT
1 TTTTCTTTT-TTTC-TTTTTCTTTTTTTTCTTTTTTCTTT
* *
632207 TTTTCTTTTTATT-TTATTCTCTCTTTTTATTCTATTCTCTTT
1 TTTTCTTTTT-TTCTT-TT-TCT-TTTTT-TTCTTTTTTCTTT
632249 TTTTCTTTTTTTCTTTTTCTTTTTTTTCTTTTTTCTTT
1 TTTTCTTTTTTTCTTTTTCTTTTTTTTCTTTTTTCTTT
632287 TTTTCTTTTTTT
1 TTTTCTTTTTTT
632299 TTCTTTTTTC
Statistics
Matches: 77, Mismatches: 7, Indels: 16
0.77 0.07 0.16
Matches are distributed among these distances:
36 2 0.03
37 2 0.03
38 36 0.47
39 5 0.06
40 7 0.09
41 6 0.08
42 19 0.25
ACGTcount: A:0.04, C:0.15, G:0.01, T:0.80
Consensus pattern (38 bp):
TTTTCTTTTTTTCTTTTTCTTTTTTTTCTTTTTTCTTT
Found at i:633170 original size:25 final size:25
Alignment explanation
Indices: 633131--633190 Score: 68
Period size: 25 Copynumber: 2.4 Consensus size: 25
633121 AATAATAATA
* *
633131 GCATATTATTAATTCAT-TTGGAATT
1 GCATATTAATCATTCATGTT-GAATT
* *
633156 GCATGTTAATCATTCATGTTGCATT
1 GCATATTAATCATTCATGTTGAATT
633181 GCATATTAAT
1 GCATATTAAT
633191 TCATGTTACA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
25 27 0.93
26 2 0.07
ACGTcount: A:0.30, C:0.12, G:0.13, T:0.45
Consensus pattern (25 bp):
GCATATTAATCATTCATGTTGAATT
Found at i:633695 original size:6 final size:6
Alignment explanation
Indices: 633686--633710 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
633676 TTCGTTCTCG
633686 TCCTCA TCCTCA TCCTCA TCCTCA T
1 TCCTCA TCCTCA TCCTCA TCCTCA T
633711 TCCCGTCATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.48, G:0.00, T:0.36
Consensus pattern (6 bp):
TCCTCA
Found at i:644489 original size:2 final size:2
Alignment explanation
Indices: 644482--644531 Score: 100
Period size: 2 Copynumber: 25.0 Consensus size: 2
644472 ATCTGTTTAC
644482 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
644524 AT AT AT AT
1 AT AT AT AT
644532 GAATTTTTTA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 48 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:648957 original size:16 final size:15
Alignment explanation
Indices: 648936--648969 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
648926 AATTTGATTC
648936 CAATTAATTATATAAA
1 CAATTAATTATA-AAA
*
648952 CAATTATTTATAAAA
1 CAATTAATTATAAAA
648967 CAA
1 CAA
648970 AATCTACACA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.56, C:0.09, G:0.00, T:0.35
Consensus pattern (15 bp):
CAATTAATTATAAAA
Found at i:652446 original size:20 final size:20
Alignment explanation
Indices: 652421--652458 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
652411 ATGGTATGGA
*
652421 TTGCCTTGTTGTTTATGTTT
1 TTGCCTTGTTGCTTATGTTT
*
652441 TTGCCTTTTTGCTTATGT
1 TTGCCTTGTTGCTTATGT
652459 ACCGTGTTCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.05, C:0.13, G:0.18, T:0.63
Consensus pattern (20 bp):
TTGCCTTGTTGCTTATGTTT
Found at i:652977 original size:17 final size:17
Alignment explanation
Indices: 652934--652985 Score: 54
Period size: 17 Copynumber: 3.2 Consensus size: 17
652924 ATTACAATAG
*
652934 AAACTCTTTAAATTAAT
1 AAACTCTCTAAATTAAT
**
652951 --ACTCGGTAAATTAAT
1 AAACTCTCTAAATTAAT
*
652966 AAACTCTCTAAAATAAT
1 AAACTCTCTAAATTAAT
652983 AAA
1 AAA
652986 TTTGTCCGAT
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
15 13 0.46
17 15 0.54
ACGTcount: A:0.50, C:0.13, G:0.04, T:0.33
Consensus pattern (17 bp):
AAACTCTCTAAATTAAT
Found at i:655806 original size:7 final size:7
Alignment explanation
Indices: 655794--655823 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
655784 GGGTGGTATA
655794 TGTAAGT
1 TGTAAGT
655801 TGTAAGT
1 TGTAAGT
655808 TGTAAGT
1 TGTAAGT
*
655815 TGTATGT
1 TGTAAGT
655822 TG
1 TG
655824 ATTAAATTCA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.23, C:0.00, G:0.30, T:0.47
Consensus pattern (7 bp):
TGTAAGT
Found at i:659454 original size:53 final size:54
Alignment explanation
Indices: 659371--659472 Score: 154
Period size: 53 Copynumber: 1.9 Consensus size: 54
659361 ATCAAAGTTA
659371 AAGGACCACAAAGTAAAAATCAGTAATTATTACCAA-ATTAAGGACCACAATAG
1 AAGGACCACAAAGTAAAAATCAGTAATTATTACCAACATTAAGGACCACAATAG
* * *
659424 AAGGACCACGACGTAAAAAAT-AGTAGTTATTACCAACATTAAGGACCAC
1 AAGGACCACAAAGT-AAAAATCAGTAATTATTACCAACATTAAGGACCAC
659473 GAAGTAAAAA
Statistics
Matches: 44, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
53 26 0.59
54 18 0.41
ACGTcount: A:0.48, C:0.19, G:0.15, T:0.19
Consensus pattern (54 bp):
AAGGACCACAAAGTAAAAATCAGTAATTATTACCAACATTAAGGACCACAATAG
Found at i:660495 original size:2 final size:2
Alignment explanation
Indices: 660416--660484 Score: 99
Period size: 2 Copynumber: 36.0 Consensus size: 2
660406 TTAACTTGGA
* *
660416 AT AT AT GT AT AT AT AT -T A- AA AT -T AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
660455 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
660485 TAAAAATATA
Statistics
Matches: 61, Mismatches: 3, Indels: 6
0.87 0.04 0.09
Matches are distributed among these distances:
1 3 0.05
2 58 0.95
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.49
Consensus pattern (2 bp):
AT
Found at i:662833 original size:2 final size:2
Alignment explanation
Indices: 662826--662855 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
662816 CATGTTATTA
662826 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
662856 TGTTCTAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:663957 original size:14 final size:14
Alignment explanation
Indices: 663919--663958 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
663909 ATACATATTG
663919 ATAAACCCTAAATC
1 ATAAACCCTAAATC
*
663933 ATGAACCCTAAATC
1 ATAAACCCTAAATC
* *
663947 GTAAACTCTAAA
1 ATAAACCCTAAA
663959 CCTTAAACAC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.47, C:0.25, G:0.05, T:0.23
Consensus pattern (14 bp):
ATAAACCCTAAATC
Found at i:664069 original size:27 final size:28
Alignment explanation
Indices: 664012--664069 Score: 68
Period size: 29 Copynumber: 2.1 Consensus size: 28
664002 AGAGGTGCAC
664012 AAAAAATCCGAATATCCGATTTTGGGTAA
1 AAAAAATCCGAATATCCGATTTTGGG-AA
*
664041 AAAATATCCGAA-A-CCGGATTTT-GGAA
1 AAAAAATCCGAATATCC-GATTTTGGGAA
664067 AAA
1 AAA
664070 CCGGTTTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
26 5 0.19
27 4 0.15
28 7 0.26
29 11 0.41
ACGTcount: A:0.45, C:0.14, G:0.17, T:0.24
Consensus pattern (28 bp):
AAAAAATCCGAATATCCGATTTTGGGAA
Found at i:664218 original size:17 final size:17
Alignment explanation
Indices: 664186--664219 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
664176 TCAAACCGGA
*
664186 TAAAAAACCGGTTTTTT
1 TAAAAAACCGGATTTTT
*
664203 TAAAAAACTGGATTTTT
1 TAAAAAACCGGATTTTT
664220 ATCCGAAATA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.38, C:0.09, G:0.12, T:0.41
Consensus pattern (17 bp):
TAAAAAACCGGATTTTT
Found at i:669493 original size:13 final size:14
Alignment explanation
Indices: 669470--669500 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
669460 ATCTTATAAC
669470 CTCTAAATTTAAAA
1 CTCTAAATTTAAAA
669484 CTCT-AATTTAAAA
1 CTCTAAATTTAAAA
669497 CTCT
1 CTCT
669501 TGATTTAGGG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 13 0.76
14 4 0.24
ACGTcount: A:0.42, C:0.19, G:0.00, T:0.39
Consensus pattern (14 bp):
CTCTAAATTTAAAA
Found at i:672102 original size:20 final size:20
Alignment explanation
Indices: 672059--672100 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 20
672049 ATAAAAAATA
*
672059 TTAAAAAAATATTAATATTT
1 TTAAAAAAATAATAATATTT
672079 TTAATAAAAATAATAATATTT
1 TTAA-AAAAATAATAATATTT
672100 T
1 T
672101 AAATCATTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 4 0.20
21 16 0.80
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (20 bp):
TTAAAAAAATAATAATATTT
Found at i:674458 original size:14 final size:14
Alignment explanation
Indices: 674439--674467 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
674429 TAGCCACTTT
674439 TGCTTCATTCTTAG
1 TGCTTCATTCTTAG
674453 TGCTTCATTCTTAG
1 TGCTTCATTCTTAG
674467 T
1 T
674468 CGTTATTCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.14, C:0.21, G:0.14, T:0.52
Consensus pattern (14 bp):
TGCTTCATTCTTAG
Found at i:675978 original size:22 final size:22
Alignment explanation
Indices: 675947--675993 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
675937 ATGTGTGTTT
* *
675947 ATCCTTAAATTTTATCATGTCC
1 ATCCTGAAATTTTATCATATCC
*
675969 ATCCTGAAATTTTATCGTATCC
1 ATCCTGAAATTTTATCATATCC
675991 ATC
1 ATC
675994 TATATATGAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.28, C:0.23, G:0.06, T:0.43
Consensus pattern (22 bp):
ATCCTGAAATTTTATCATATCC
Found at i:676577 original size:10 final size:11
Alignment explanation
Indices: 676560--676589 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
676550 AATATATATT
676560 ATATTTTTTTA
1 ATATTTTTTTA
676571 ATATTTTTTTA
1 ATATTTTTTTA
676582 ATATTTTT
1 ATATTTTT
676590 GGGGAGGGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (11 bp):
ATATTTTTTTA
Found at i:676749 original size:2 final size:2
Alignment explanation
Indices: 676742--676773 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
676732 TTTACTTAAA
676742 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
676774 CAATTGGTGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:677810 original size:34 final size:30
Alignment explanation
Indices: 677772--677840 Score: 86
Period size: 30 Copynumber: 2.2 Consensus size: 30
677762 TCGATATAAC
*
677772 AATTTAAGGCAAAATGGTTTTTGGACTTGAATTG
1 AATTTAA--CAAAAT-GTGTTTGGACTT-AATTG
677806 AATTT-ACAAAATGTGTTTGGACTTAATTG
1 AATTTAACAAAATGTGTTTGGACTTAATTG
677835 AATTTA
1 AATTTA
677841 TTCAAAATTT
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
29 10 0.30
30 11 0.33
31 6 0.18
33 1 0.03
34 5 0.15
ACGTcount: A:0.35, C:0.06, G:0.19, T:0.41
Consensus pattern (30 bp):
AATTTAACAAAATGTGTTTGGACTTAATTG
Found at i:677848 original size:31 final size:31
Alignment explanation
Indices: 677781--677840 Score: 97
Period size: 29 Copynumber: 2.0 Consensus size: 31
677771 CAATTTAAGG
*
677781 CAAAATGGTTTTTGGACTTGAATTGAATTTA
1 CAAAATGGTGTTTGGACTTGAATTGAATTTA
677812 CAAAAT-GTGTTTGGACTT-AATTGAATTTA
1 CAAAATGGTGTTTGGACTTGAATTGAATTTA
677841 TTCAAAATTT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
29 11 0.39
30 11 0.39
31 6 0.21
ACGTcount: A:0.33, C:0.07, G:0.18, T:0.42
Consensus pattern (31 bp):
CAAAATGGTGTTTGGACTTGAATTGAATTTA
Found at i:677938 original size:19 final size:19
Alignment explanation
Indices: 677916--677970 Score: 83
Period size: 19 Copynumber: 2.9 Consensus size: 19
677906 GAAAATTAAT
677916 TTACTATTTGAACAGTAAA
1 TTACTATTTGAACAGTAAA
*
677935 TTACTATTTGAATAGTAAA
1 TTACTATTTGAACAGTAAA
* *
677954 TCACTGTTTGAACAGTA
1 TTACTATTTGAACAGTA
677971 CTCGAGGCTC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 32 1.00
ACGTcount: A:0.38, C:0.11, G:0.13, T:0.38
Consensus pattern (19 bp):
TTACTATTTGAACAGTAAA
Found at i:678101 original size:21 final size:21
Alignment explanation
Indices: 678075--678116 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
678065 ATTTGAATAT
*
678075 TATGAAGGGGTATCGATTCCC
1 TATGAAGGGGTACCGATTCCC
678096 TATGAAGGGGTACCGATTCCC
1 TATGAAGGGGTACCGATTCCC
678117 CCCATTCTGG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (21 bp):
TATGAAGGGGTACCGATTCCC
Found at i:678437 original size:34 final size:32
Alignment explanation
Indices: 678399--678468 Score: 95
Period size: 34 Copynumber: 2.1 Consensus size: 32
678389 TTTTGTCAAG
* *
678399 GGGAAATGTTCTAGCTTAGCCCGTGTAAAAGCTA
1 GGGAAAGGTTCTAGCTTAGCCCG-G-AAAAACTA
*
678433 GGGAAAGGTTCTAGTTTAGCCCGGAAAAACTA
1 GGGAAAGGTTCTAGCTTAGCCCGGAAAAACTA
678465 GGGA
1 GGGA
678469 GTTTGTAAGG
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
32 11 0.33
33 1 0.03
34 21 0.64
ACGTcount: A:0.31, C:0.16, G:0.30, T:0.23
Consensus pattern (32 bp):
GGGAAAGGTTCTAGCTTAGCCCGGAAAAACTA
Found at i:680712 original size:31 final size:31
Alignment explanation
Indices: 680645--680704 Score: 97
Period size: 29 Copynumber: 2.0 Consensus size: 31
680635 CAATTTAAGG
*
680645 CAAAATGGTTTTTGGACTTGAATTGAATTTA
1 CAAAATGGTATTTGGACTTGAATTGAATTTA
680676 CAAAAT-GTATTTGGACTT-AATTGAATTTA
1 CAAAATGGTATTTGGACTTGAATTGAATTTA
680705 TTCAAAATTT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
29 11 0.39
30 11 0.39
31 6 0.21
ACGTcount: A:0.35, C:0.07, G:0.17, T:0.42
Consensus pattern (31 bp):
CAAAATGGTATTTGGACTTGAATTGAATTTA
Found at i:680802 original size:19 final size:19
Alignment explanation
Indices: 680780--680834 Score: 83
Period size: 19 Copynumber: 2.9 Consensus size: 19
680770 GAAAATTAAT
680780 TTACTATTTGAACAGTAAA
1 TTACTATTTGAACAGTAAA
*
680799 TTACTATTTGAATAGTAAA
1 TTACTATTTGAACAGTAAA
* *
680818 TCACTGTTTGAACAGTA
1 TTACTATTTGAACAGTA
680835 CTTGCGGCTC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 32 1.00
ACGTcount: A:0.38, C:0.11, G:0.13, T:0.38
Consensus pattern (19 bp):
TTACTATTTGAACAGTAAA
Found at i:681228 original size:19 final size:18
Alignment explanation
Indices: 681195--681262 Score: 61
Period size: 18 Copynumber: 3.7 Consensus size: 18
681185 TTCATTGAAA
*
681195 AACCGAAAAATCGAACCG
1 AACCGAAAAACCGAACCG
681213 AACCGAAAAACCCGAACCG
1 AACCGAAAAA-CCGAACCG
*
681232 TTAA---AAAAACTGAACCG
1 --AACCGAAAAACCGAACCG
681249 AACCGATAAAACCG
1 AACCGA-AAAACCG
681263 GTTTCGGTTT
Statistics
Matches: 40, Mismatches: 3, Indels: 13
0.71 0.05 0.23
Matches are distributed among these distances:
15 2 0.05
17 7 0.17
18 16 0.40
19 13 0.32
21 2 0.05
ACGTcount: A:0.50, C:0.28, G:0.15, T:0.07
Consensus pattern (18 bp):
AACCGAAAAACCGAACCG
Found at i:681468 original size:21 final size:21
Alignment explanation
Indices: 681435--681474 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 21
681425 TTTTTGCAGA
*
681435 AAAATCATTCCCAAACGGCTCC
1 AAAATCA-TCCCCAACGGCTCC
681457 AAAA-CATCCCCAACGGCT
1 AAAATCATCCCCAACGGCT
681475 AGATATGACT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 11 0.65
21 2 0.12
22 4 0.24
ACGTcount: A:0.38, C:0.38, G:0.10, T:0.15
Consensus pattern (21 bp):
AAAATCATCCCCAACGGCTCC
Found at i:681728 original size:34 final size:32
Alignment explanation
Indices: 681689--681758 Score: 95
Period size: 34 Copynumber: 2.1 Consensus size: 32
681679 TTTTGTAAAG
*
681689 GGGAAATGTTCTAGCTTAACCCGTGTAAAAGCTA
1 GGGAAATGTTCTAGCTTAACCCG-G-AAAAACTA
* *
681723 GGGAAATGTTCTAGTTTAGCCCGGAAAAACTA
1 GGGAAATGTTCTAGCTTAACCCGGAAAAACTA
681755 GGGA
1 GGGA
681759 GTTTGTAAGG
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
32 11 0.33
33 1 0.03
34 21 0.64
ACGTcount: A:0.33, C:0.16, G:0.27, T:0.24
Consensus pattern (32 bp):
GGGAAATGTTCTAGCTTAACCCGGAAAAACTA
Found at i:682598 original size:21 final size:21
Alignment explanation
Indices: 682573--682831 Score: 282
Period size: 21 Copynumber: 12.3 Consensus size: 21
682563 GCGTTGCGAT
*
682573 ATTTGGAGACTATCGCAACAA
1 ATTTGGAGACTATCGCAACGA
* *
682594 ATTTGGAGACTATCACAATGA
1 ATTTGGAGACTATCGCAACGA
682615 ATTTGGAGACTATCGCAACGA
1 ATTTGGAGACTATCGCAACGA
*
682636 ACTTGGAGACTATCGCAACGA
1 ATTTGGAGACTATCGCAACGA
682657 ATTTGGAGACTATCGCAACGA
1 ATTTGGAGACTATCGCAACGA
* *
682678 ACTTGGAGACTATCGCAATGA
1 ATTTGGAGACTATCGCAACGA
*
682699 ACTTGGAGACTATCGCAACGA
1 ATTTGGAGACTATCGCAACGA
* *
682720 ACTTGGAGACTATCACAACGA
1 ATTTGGAGACTATCGCAACGA
*
682741 ATTTGTA-A-TAAATCGCAACGCGA
1 ATTTGGAGACT--ATCGCAA--CGA
*
682764 ACTT--AGACTATCGCAACGA
1 ATTTGGAGACTATCGCAACGA
682783 ATTTGGA-A-TAAATCGCAACGCAA
1 ATTTGGAGACT--ATCGCAACG--A
*
682806 ACTT-G-GACTATCGCAACGA
1 ATTTGGAGACTATCGCAACGA
682825 ATTTGGA
1 ATTTGGA
682832 AAATCGCAAC
Statistics
Matches: 204, Mismatches: 18, Indels: 32
0.80 0.07 0.13
Matches are distributed among these distances:
19 12 0.06
20 3 0.01
21 174 0.85
22 3 0.01
23 12 0.06
ACGTcount: A:0.36, C:0.20, G:0.21, T:0.23
Consensus pattern (21 bp):
ATTTGGAGACTATCGCAACGA
Found at i:682832 original size:42 final size:42
Alignment explanation
Indices: 682573--682831 Score: 318
Period size: 42 Copynumber: 6.2 Consensus size: 42
682563 GCGTTGCGAT
* * * *
682573 ATTTGGAGACTATCGCAACAAATTTGGAGACTATCACAATGA
1 ATTTGGAGACTATCGCAACGAACTTGGAGACTATCGCAACGA
682615 ATTTGGAGACTATCGCAACGAACTTGGAGACTATCGCAACGA
1 ATTTGGAGACTATCGCAACGAACTTGGAGACTATCGCAACGA
*
682657 ATTTGGAGACTATCGCAACGAACTTGGAGACTATCGCAATGA
1 ATTTGGAGACTATCGCAACGAACTTGGAGACTATCGCAACGA
* *
682699 ACTTGGAGACTATCGCAACGAACTTGGAGACTATCACAACGA
1 ATTTGGAGACTATCGCAACGAACTTGGAGACTATCGCAACGA
*
682741 ATTTGTA-A-TAAATCGCAACGCGAACTT--AGACTATCGCAACGA
1 ATTTGGAGACT--ATCGCAA--CGAACTTGGAGACTATCGCAACGA
682783 ATTTGGA-A-TAAATCGCAACGCAAACTT-G-GACTATCGCAACGA
1 ATTTGGAGACT--ATCGCAACG--AACTTGGAGACTATCGCAACGA
682825 ATTTGGA
1 ATTTGGA
682832 AAATCGCAAC
Statistics
Matches: 198, Mismatches: 12, Indels: 14
0.88 0.05 0.06
Matches are distributed among these distances:
40 3 0.02
41 1 0.01
42 187 0.94
44 7 0.04
ACGTcount: A:0.36, C:0.20, G:0.21, T:0.23
Consensus pattern (42 bp):
ATTTGGAGACTATCGCAACGAACTTGGAGACTATCGCAACGA
Found at i:682873 original size:42 final size:41
Alignment explanation
Indices: 682600--682863 Score: 236
Period size: 42 Copynumber: 6.3 Consensus size: 41
682590 ACAAATTTGG
* * * *
682600 AGACTATCACAATGAATTTGGAGACTATCGCAA--CGAACTT
1 AGACTATCGCAACGAATTTGGATA-AATCGCAACGCGAACTT
* *
682640 GGAGACTATCGCAACGAATTTGGAGACTATCGCAA--CGAACTT
1 --AGACTATCGCAACGAATTTGGATA-AATCGCAACGCGAACTT
* * * *
682682 GGAGACTATCGCAATGAACTTGGAGACTATCGCAA--CGAACTT
1 --AGACTATCGCAACGAATTTGGATA-AATCGCAACGCGAACTT
* *
682724 GGAGACTATCACAACGAATTTGTAATAAATCGCAACGCGAACTT
1 --AGACTATCGCAACGAATTTG-GATAAATCGCAACGCGAACTT
*
682768 AGACTATCGCAACGAATTTGGAATAAATCGCAACGCAAACTT
1 AGACTATCGCAACGAATTTGG-ATAAATCGCAACGCGAACTT
*
682810 GGACTATCGCAACGAATTTGGA-AAATCGCAACGCGAACTT
1 AGACTATCGCAACGAATTTGGATAAATCGCAACGCGAACTT
* *
682850 CGACTATCTCAACG
1 AGACTATCGCAACG
682864 CGAACTTGGA
Statistics
Matches: 201, Mismatches: 17, Indels: 10
0.88 0.07 0.04
Matches are distributed among these distances:
40 29 0.14
41 1 0.00
42 162 0.81
43 2 0.01
44 7 0.03
ACGTcount: A:0.36, C:0.22, G:0.20, T:0.22
Consensus pattern (41 bp):
AGACTATCGCAACGAATTTGGATAAATCGCAACGCGAACTT
Found at i:682887 original size:21 final size:21
Alignment explanation
Indices: 682622--682888 Score: 143
Period size: 21 Copynumber: 12.8 Consensus size: 21
682612 TGAATTTGGA
682622 GACTATCGCAA--CGAACTTGG
1 GACTATCGCAACGCGAACTT-G
*
682642 AGACTATCGCAA--CGAATTTGG
1 -GACTATCGCAACGCGAACTT-G
682663 AGACTATCGCAA--CGAACTTGG
1 -GACTATCGCAACGCGAACTT-G
*
682684 AGACTATCGCAA--TGAACTTGG
1 -GACTATCGCAACGCGAACTT-G
682705 AGACTATCGCAA--CGAACTTGG
1 -GACTATCGCAACGCGAACTT-G
* *
682726 AGACTATCACAA--CGAATTTG
1 -GACTATCGCAACGCGAACTTG
* * *
682746 TAATAAATCGCAACGCGAACTTA
1 GACT--ATCGCAACGCGAACTTG
*
682769 GACTATCGCAA--CGAATTTG
1 GACTATCGCAACGCGAACTTG
* *
682788 GAATAAATCGCAACGCAAACTTG
1 GACT--ATCGCAACGCGAACTTG
*
682811 GACTATCGCAA--CGAATTTG
1 GACTATCGCAACGCGAACTTG
** *
682830 GAAAATCGCAACGCGAACTTC
1 GACTATCGCAACGCGAACTTG
*
682851 GACTATCTCAACGCGAACTTG
1 GACTATCGCAACGCGAACTTG
* *
682872 GACTATTGCAATGCGAA
1 GACTATCGCAACGCGAA
682889 TATGTAAATC
Statistics
Matches: 204, Mismatches: 32, Indels: 20
0.80 0.12 0.08
Matches are distributed among these distances:
19 26 0.13
20 1 0.00
21 160 0.78
23 17 0.08
ACGTcount: A:0.35, C:0.22, G:0.21, T:0.22
Consensus pattern (21 bp):
GACTATCGCAACGCGAACTTG
Found at i:685687 original size:13 final size:15
Alignment explanation
Indices: 685650--685695 Score: 60
Period size: 16 Copynumber: 3.1 Consensus size: 15
685640 TTGCACACCG
685650 AAATATATTATTAAT
1 AAATATATTATTAAT
685665 ATAATATATTATT-AT
1 A-AATATATTATTAAT
685680 AAAT-TATTAATTAAT
1 AAATATATT-ATTAAT
685695 A
1 A
685696 TTTGAAATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
13 4 0.14
14 6 0.21
15 7 0.25
16 11 0.39
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
AAATATATTATTAAT
Found at i:691052 original size:30 final size:35
Alignment explanation
Indices: 691016--691096 Score: 84
Period size: 30 Copynumber: 2.4 Consensus size: 35
691006 GCTTCCAAGG
691016 TAATTTTAATATATTCG-AT-TCG-T-ATTATA-T
1 TAATTTTAATATATTCGAATATCGATAATTATATT
*
691046 TAATTTTTAA-ATAATCGAATATCGATAATTATATT
1 TAA-TTTTAATATATTCGAATATCGATAATTATATT
691081 TAATTTCTATATATAT
1 TAATTT-TA-ATATAT
691097 ATTTTTCAGA
Statistics
Matches: 40, Mismatches: 2, Indels: 11
0.75 0.04 0.21
Matches are distributed among these distances:
30 9 0.22
31 8 0.20
32 3 0.08
33 1 0.03
34 9 0.22
35 6 0.15
36 1 0.03
37 3 0.08
ACGTcount: A:0.38, C:0.06, G:0.05, T:0.51
Consensus pattern (35 bp):
TAATTTTAATATATTCGAATATCGATAATTATATT
Found at i:694503 original size:21 final size:21
Alignment explanation
Indices: 694477--694519 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
694467 GGAAACCTGA
694477 GTATCTGGAAATGCCAACATT
1 GTATCTGGAAATGCCAACATT
694498 GTATCTGGAAATGCCAACATT
1 GTATCTGGAAATGCCAACATT
694519 G
1 G
694520 ATTAGACGAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.28
Consensus pattern (21 bp):
GTATCTGGAAATGCCAACATT
Found at i:698375 original size:42 final size:42
Alignment explanation
Indices: 698327--698408 Score: 112
Period size: 42 Copynumber: 2.0 Consensus size: 42
698317 GGATTTTAGA
*
698327 TTCCGTAGCATA-CATATTTTCCATAAATCTCTGGATTTCACC
1 TTCCGTAGCA-ACCATATCTTCCATAAATCTCTGGATTTCACC
* * *
698369 TTCCGTAGCAACCATATCTTCGATAAATTTTTGGATTTCA
1 TTCCGTAGCAACCATATCTTCCATAAATCTCTGGATTTCA
698409 GCTTTGATAG
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
41 1 0.03
42 34 0.97
ACGTcount: A:0.27, C:0.23, G:0.11, T:0.39
Consensus pattern (42 bp):
TTCCGTAGCAACCATATCTTCCATAAATCTCTGGATTTCACC
Found at i:698420 original size:42 final size:41
Alignment explanation
Indices: 698327--698430 Score: 102
Period size: 42 Copynumber: 2.5 Consensus size: 41
698317 GGATTTTAGA
* *
698327 TTCCGTAGCATACATATTTTCCATAAATCTCTGGATTTCACC
1 TTCCGTAGCA-CCATATCTTCCATAAATCTCTGGATTTCACC
* * * *
698369 TTCCGTAGCAACCATATCTTCGATAAATTTTTGGATTTCAGC
1 TTCCGTAGC-ACCATATCTTCCATAAATCTCTGGATTTCACC
*
698411 TT-TGATAGCACCATCATCTT
1 TTCCG-TAGCACCAT-ATCTT
698431 TCACCATTTC
Statistics
Matches: 52, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
41 6 0.12
42 45 0.87
43 1 0.02
ACGTcount: A:0.26, C:0.24, G:0.12, T:0.38
Consensus pattern (41 bp):
TTCCGTAGCACCATATCTTCCATAAATCTCTGGATTTCACC
Found at i:701743 original size:18 final size:20
Alignment explanation
Indices: 701707--701744 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
701697 AAAATTTTAG
*
701707 AAAATATATATTATCAATAT
1 AAAATATATATTATAAATAT
701727 AAAATATA-ATTA-AAATAT
1 AAAATATATATTATAAATAT
701745 CTAAAAATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 5 0.29
19 4 0.24
20 8 0.47
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.37
Consensus pattern (20 bp):
AAAATATATATTATAAATAT
Found at i:711405 original size:59 final size:58
Alignment explanation
Indices: 711240--711423 Score: 197
Period size: 59 Copynumber: 3.1 Consensus size: 58
711230 CCAAATTATG
* ** * *
711240 ACCCTCATTTTAAATTGGTCCTCAAGCTTTTGAACCGTCCAATTTCATACTAAACTATG
1 ACCCTCA-TTTAAATTGGTCCTCAAACTTTTGAACATTCTAATTTCATACTAAACTATA
** * * *
711299 ACCCTCATTTAAAATCAGTCATCAAACTTTTGAATATTCTAATTTCATCCTAAACTATA
1 ACCCTCATTT-AAATTGGTCCTCAAACTTTTGAACATTCTAATTTCATACTAAACTATA
* * * * *
711358 ACTCTCATTCTAAATTGGTCCTCAAACTTTAGAACATTATAAATTCATTCTCAAACTATA
1 ACCCTCATT-TAAATTGGTCCTCAAACTTTTGAACATTCTAATTTCATACT-AAACTATA
711418 ACCCTC
1 ACCCTC
711424 GTTAATTATC
Statistics
Matches: 102, Mismatches: 20, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
58 3 0.03
59 85 0.83
60 14 0.14
ACGTcount: A:0.34, C:0.24, G:0.06, T:0.36
Consensus pattern (58 bp):
ACCCTCATTTAAATTGGTCCTCAAACTTTTGAACATTCTAATTTCATACTAAACTATA
Found at i:712580 original size:26 final size:28
Alignment explanation
Indices: 712519--712580 Score: 74
Period size: 31 Copynumber: 2.2 Consensus size: 28
712509 GAGTATTGAT
*
712519 GAGCTCGACTCGACTCGAAAACTCTGAAAT
1 GAGCTCGACTCGACTCGAAAAC-CT-AAAC
712549 GAAGCTCGACTCGACTCGAAAA-CT-AAC
1 G-AGCTCGACTCGACTCGAAAACCTAAAC
712576 GAGCT
1 GAGCT
712581 TAAAATTTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
26 4 0.13
27 3 0.10
29 2 0.07
30 1 0.03
31 20 0.67
ACGTcount: A:0.34, C:0.27, G:0.21, T:0.18
Consensus pattern (28 bp):
GAGCTCGACTCGACTCGAAAACCTAAAC
Found at i:714210 original size:43 final size:43
Alignment explanation
Indices: 714162--714286 Score: 232
Period size: 43 Copynumber: 2.9 Consensus size: 43
714152 TTCTTTGTCC
714162 TATATTATCTATATAATAATATAAATTAACCATTAACTACCTT
1 TATATTATCTATATAATAATATAAATTAACCATTAACTACCTT
*
714205 TATATTATCTATATAATAGTATAAATTAACCATTAACTACCTT
1 TATATTATCTATATAATAATATAAATTAACCATTAACTACCTT
*
714248 TATATTATCCATATAATAATATAAATTAACCATTAACTA
1 TATATTATCTATATAATAATATAAATTAACCATTAACTA
714287 TCGTCTTTAA
Statistics
Matches: 79, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 79 1.00
ACGTcount: A:0.45, C:0.14, G:0.01, T:0.41
Consensus pattern (43 bp):
TATATTATCTATATAATAATATAAATTAACCATTAACTACCTT
Found at i:716509 original size:113 final size:113
Alignment explanation
Indices: 716307--716511 Score: 259
Period size: 113 Copynumber: 1.8 Consensus size: 113
716297 ATCTACTCAT
* * * * * *
716307 TTCACAAAGTTGTTTCCAGGAAATGAAAATTAAATAATTACTTATCAACAGCGATTTAATTCTGT
1 TTCACAAAGTTATTTACAGGAAATGAAAATTAAATAAATACTAATCAAAAGCGATTTAATTCAGT
* *
716372 TGAATTTACTCATCTCACAGAATCAACATAATATGAGAACTCTTTTTG
66 CGAATCTACTCATCTCACAGAATCAACATAATATGAGAACTCTTTTTG
* * * *
716420 TTCACAAATTTATTTACAGTAAATGAAACTTAAATAAATACTAATCAAAAGTG-TGTTAATTCAG
1 TTCACAAAGTTATTTACAGGAAATGAAAATTAAATAAATACTAATCAAAAGCGAT-TTAATTCAG
* * *
716484 TCGGATCTACTCATTTCACATAATCAAC
65 TCGAATCTACTCATCTCACAGAATCAAC
716512 CGAATACGAT
Statistics
Matches: 76, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
112 1 0.01
113 75 0.99
ACGTcount: A:0.39, C:0.16, G:0.10, T:0.35
Consensus pattern (113 bp):
TTCACAAAGTTATTTACAGGAAATGAAAATTAAATAAATACTAATCAAAAGCGATTTAATTCAGT
CGAATCTACTCATCTCACAGAATCAACATAATATGAGAACTCTTTTTG
Found at i:716534 original size:113 final size:113
Alignment explanation
Indices: 716307--716535 Score: 244
Period size: 113 Copynumber: 2.0 Consensus size: 113
716297 ATCTACTCAT
* * * * * *
716307 TTCACAAAGTTGTTTCCAGGAAATGAAAATTAAATAATTACTTATCAACAGCGATTTAATTCTGT
1 TTCACAAAGTTATTTACAGGAAATGAAAATTAAATAAATACTAATCAAAAGCGATTTAATTCAGT
* * * * * *
716372 TGAATTTACTCATCTCACAGAATCAACATAATATGAGAACTCTTTTTG
66 CGAATCTACTCATCTCACAGAATCAACAGAATACGAGAACTATTATTG
* * * *
716420 TTCACAAATTTATTTACAGTAAATGAAACTTAAATAAATACTAATCAAAAGTG-TGTTAATTCAG
1 TTCACAAAGTTATTTACAGGAAATGAAAATTAAATAAATACTAATCAAAAGCGAT-TTAATTCAG
* * * * **
716484 TCGGATCTACTCATTTCACATAATCAACCGAATACGATTACTATTATTG
65 TCGAATCTACTCATCTCACAGAATCAACAGAATACGAGAACTATTATTG
716533 TTC
1 TTC
716536 TTGATCATGA
Statistics
Matches: 93, Mismatches: 22, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
112 1 0.01
113 92 0.99
ACGTcount: A:0.38, C:0.16, G:0.10, T:0.35
Consensus pattern (113 bp):
TTCACAAAGTTATTTACAGGAAATGAAAATTAAATAAATACTAATCAAAAGCGATTTAATTCAGT
CGAATCTACTCATCTCACAGAATCAACAGAATACGAGAACTATTATTG
Found at i:718502 original size:90 final size:90
Alignment explanation
Indices: 718270--718607 Score: 468
Period size: 90 Copynumber: 3.8 Consensus size: 90
718260 ATCGTTCACA
** * *
718270 TACTTCTACAACATAGAAGAGATTG-AAGTTTCAAACATGCTTAAACACGCAATATCTTTCGATT
1 TACTTCTACAACATAGAAGAGAACGAAAGTTT-AAACATGCTTAATCACACAATATCTTTCGATT
*
718334 TAAAGATAGAAAAAGATCTTACCAAT
65 TATAGATAGAAAAAGATCTTACCAAT
*
718360 TACTTCT---ACATAGAAGAGAACGAAAGTTTAAACATGCTTAATCACACAATATCTTTTGATTT
1 TACTTCTACAACATAGAAGAGAACGAAAGTTTAAACATGCTTAATCACACAATATCTTTCGATTT
718422 ATAGATAGAAAAAGATCTTACCAAT
66 ATAGATAGAAAAAGATCTTACCAAT
* *
718447 TACTTCTACAACATAGAAGAGAACGAAAGTTTAAACATGCTTAATCACATAATATCTTTCAATTT
1 TACTTCTACAACATAGAAGAGAACGAAAGTTTAAACATGCTTAATCACACAATATCTTTCGATTT
718512 ATAGATAGAAAAAGATCTTACCAAT
66 ATAGATAGAAAAAGATCTTACCAAT
** * * * * * ** *
718537 TACTTCTACAACATATTAGAGAATGAAGGTTCAAACATGTTTAAACATGCAATATCTTTCAATTT
1 TACTTCTACAACATAGAAGAGAACGAAAGTTTAAACATGCTTAATCACACAATATCTTTCGA-TT
718602 TATAGA
65 TATAGA
718608 CAAAGGGATC
Statistics
Matches: 224, Mismatches: 19, Indels: 9
0.89 0.08 0.04
Matches are distributed among these distances:
87 74 0.33
88 6 0.03
90 136 0.61
91 8 0.04
ACGTcount: A:0.42, C:0.15, G:0.11, T:0.31
Consensus pattern (90 bp):
TACTTCTACAACATAGAAGAGAACGAAAGTTTAAACATGCTTAATCACACAATATCTTTCGATTT
ATAGATAGAAAAAGATCTTACCAAT
Found at i:721409 original size:222 final size:222
Alignment explanation
Indices: 721023--721470 Score: 860
Period size: 222 Copynumber: 2.0 Consensus size: 222
721013 GAAATTCACA
721023 AAAAAAATACAGAATATTTATAAATTATCTTATAAATACTTAAATATCAAAGTGTTAATGAATAT
1 AAAAAAATACAGAATATTTATAAATTATCTTATAAATACTTAAATATCAAAGTGTTAATGAATAT
721088 ATTCAAAACTTATAAGTACTTAAACACCAAAATATAATTCTCAATTTACTTATAGGTTTTTTTTA
66 ATTCAAAACTTATAAGTACTTAAACACCAAAATATAATTCTCAATTTACTTATAGGTTTTTTTTA
721153 TAGGAAGTGGAGGTCTCATTAAACCCCCCCTCATGATTAATGGAACATCAAATGGTGTTCCTTAA
131 TAGGAAGTGGAGGTCTCATTAAACCCCCCCTCATGATTAATGGAACATCAAATGGTGTTCCTTAA
*
721218 TCAACGTAAGGAGGAAAAGTGTGTCTC
196 TCAACGGAAGGAGGAAAAGTGTGTCTC
*
721245 AAAAAAATACAGAATATTTATAAATTATCTTATAAATACTTAATTATCAAAGTGTTAATGAATAT
1 AAAAAAATACAGAATATTTATAAATTATCTTATAAATACTTAAATATCAAAGTGTTAATGAATAT
*
721310 ATTCAAAACTTATAAGTACTTAAACACCAAAATATATTTCTCAATTTACTTATAGGTTTTTTTTA
66 ATTCAAAACTTATAAGTACTTAAACACCAAAATATAATTCTCAATTTACTTATAGGTTTTTTTTA
*
721375 TAGGAAGTGGAGGTCTCATTAAACCCCCCCTCATGATTAATGGAACATCAAATGGTGTTTCTTAA
131 TAGGAAGTGGAGGTCTCATTAAACCCCCCCTCATGATTAATGGAACATCAAATGGTGTTCCTTAA
721440 TCAACGGAAGGAGGAAAAGTGTGTCTC
196 TCAACGGAAGGAGGAAAAGTGTGTCTC
721467 AAAA
1 AAAA
721471 TTCATTAATA
Statistics
Matches: 222, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
222 222 1.00
ACGTcount: A:0.40, C:0.14, G:0.13, T:0.33
Consensus pattern (222 bp):
AAAAAAATACAGAATATTTATAAATTATCTTATAAATACTTAAATATCAAAGTGTTAATGAATAT
ATTCAAAACTTATAAGTACTTAAACACCAAAATATAATTCTCAATTTACTTATAGGTTTTTTTTA
TAGGAAGTGGAGGTCTCATTAAACCCCCCCTCATGATTAATGGAACATCAAATGGTGTTCCTTAA
TCAACGGAAGGAGGAAAAGTGTGTCTC
Found at i:728041 original size:23 final size:23
Alignment explanation
Indices: 728011--728056 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
728001 ATGATAATTG
728011 CTGGTTGGGAAAAAAAGTAAGTA
1 CTGGTTGGGAAAAAAAGTAAGTA
728034 CTGGTTGGGAAAAAAAGTAAGTA
1 CTGGTTGGGAAAAAAAGTAAGTA
728057 TTAATTAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.43, C:0.04, G:0.30, T:0.22
Consensus pattern (23 bp):
CTGGTTGGGAAAAAAAGTAAGTA
Found at i:735152 original size:31 final size:31
Alignment explanation
Indices: 735117--735176 Score: 120
Period size: 31 Copynumber: 1.9 Consensus size: 31
735107 CAGCGATGGC
735117 TGCAGCCATAGTTTACTTGACTCACAGCGGT
1 TGCAGCCATAGTTTACTTGACTCACAGCGGT
735148 TGCAGCCATAGTTTACTTGACTCACAGCG
1 TGCAGCCATAGTTTACTTGACTCACAGCG
735177 ACAACCCTGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.23, C:0.27, G:0.22, T:0.28
Consensus pattern (31 bp):
TGCAGCCATAGTTTACTTGACTCACAGCGGT
Found at i:740865 original size:60 final size:58
Alignment explanation
Indices: 740740--740874 Score: 137
Period size: 60 Copynumber: 2.3 Consensus size: 58
740730 TAGTGGGATG
* * *
740740 ACCATTTTGTAACTTTTAATAATTGGAGACTCAACAAAACAACGTACTATAGTCATAGA
1 ACCATTTTGT-ACTTTTAATAATCGGAGACTCAACAAAACAACGCACTATAGTCAGAGA
* * * * * *
740799 ATCATTTTGTATCTTTTAATAATCGAGAGACTCAATAAAGCAATGCCCTATAGTTC-GGGA
1 ACCATTTTGTA-CTTTTAATAATCG-GAGACTCAACAAAACAACGCACTATAG-TCAGAGA
740859 ACCATTTGTGTACTTT
1 ACCATTT-TGTACTTT
740875 ACACAAAAGT
Statistics
Matches: 62, Mismatches: 10, Indels: 7
0.78 0.13 0.09
Matches are distributed among these distances:
58 1 0.02
59 21 0.34
60 34 0.55
61 6 0.10
ACGTcount: A:0.35, C:0.17, G:0.14, T:0.34
Consensus pattern (58 bp):
ACCATTTTGTACTTTTAATAATCGGAGACTCAACAAAACAACGCACTATAGTCAGAGA
Found at i:743942 original size:34 final size:34
Alignment explanation
Indices: 743904--743968 Score: 96
Period size: 34 Copynumber: 1.9 Consensus size: 34
743894 CAAATTGTAA
743904 AATATTTATATAT-TTCTTTGAAAAAATTAAATTC
1 AATATTTATATATATT-TTTGAAAAAATTAAATTC
* *
743938 AATATTTATATATATTTTTTACAAAATTAAA
1 AATATTTATATATATTTTTGAAAAAATTAAA
743969 AATATACAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
34 26 0.93
35 2 0.07
ACGTcount: A:0.46, C:0.05, G:0.02, T:0.48
Consensus pattern (34 bp):
AATATTTATATATATTTTTGAAAAAATTAAATTC
Found at i:745390 original size:2 final size:2
Alignment explanation
Indices: 745383--745429 Score: 87
Period size: 2 Copynumber: 24.0 Consensus size: 2
745373 ACATTAGATC
745383 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
745425 -A TA TA
1 TA TA TA
745430 GTATTTGAAC
Statistics
Matches: 44, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 43 0.98
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:745706 original size:23 final size:21
Alignment explanation
Indices: 745674--745716 Score: 59
Period size: 23 Copynumber: 2.0 Consensus size: 21
745664 TTGGTCTGAA
745674 AATACAATACATAATACCGATAT
1 AATACAATACA-AATA-CGATAT
*
745697 AATACGATACAAATACGATA
1 AATACAATACAAATACGATA
745717 GTTTTTTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 5 0.26
22 4 0.21
23 10 0.53
ACGTcount: A:0.53, C:0.16, G:0.07, T:0.23
Consensus pattern (21 bp):
AATACAATACAAATACGATAT
Found at i:746355 original size:76 final size:76
Alignment explanation
Indices: 746218--746361 Score: 184
Period size: 76 Copynumber: 1.9 Consensus size: 76
746208 CTCAAATTAG
* * * * * * *
746218 GACCACTTTGTACCAAATACAAATGTTAATTTGTCCTACACAAAGGAGTCTTAAAGTACATTTTT
1 GACCACTTTGTACCAAATAAAAATGTTAACTTGACCGACACAAAGGAGTCTGAAAGAACATTCTT
746283 GGATAGTACAA
66 GGATAGTACAA
*
746294 GACCACTTTGTATCAAATAAAAA-GTTTAACTTGACCGACACAAAGGAGTCCTGAAA-AACATTC
1 GACCACTTTGTACCAAATAAAAATG-TTAACTTGACCGACACAAAGGAGT-CTGAAAGAACATTC
746357 TTGGA
64 TTGGA
746362 GTACTTTGCT
Statistics
Matches: 58, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
75 1 0.02
76 52 0.90
77 5 0.09
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.28
Consensus pattern (76 bp):
GACCACTTTGTACCAAATAAAAATGTTAACTTGACCGACACAAAGGAGTCTGAAAGAACATTCTT
GGATAGTACAA
Found at i:747237 original size:4 final size:4
Alignment explanation
Indices: 747228--747253 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
747218 AGTATTTTCA
747228 TTAT TTAT TTAT TTAT TTAT TTAT TT
1 TTAT TTAT TTAT TTAT TTAT TTAT TT
747254 TTCTTCACTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTAT
Found at i:748666 original size:27 final size:27
Alignment explanation
Indices: 748635--748686 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
748625 CGTTCGGTAA
* *
748635 TATGTTCGTTCATTTATGTTTGTTTAT
1 TATGTTCATTCATTTATGTGTGTTTAT
**
748662 TATGTTCATTTGTTTATGTGTGTTT
1 TATGTTCATTCATTTATGTGTGTTT
748687 TTTTATGTAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.13, C:0.06, G:0.17, T:0.63
Consensus pattern (27 bp):
TATGTTCATTCATTTATGTGTGTTTAT
Found at i:748920 original size:24 final size:24
Alignment explanation
Indices: 748860--748924 Score: 89
Period size: 23 Copynumber: 2.8 Consensus size: 24
748850 AAAATACATT
*
748860 TTCATTTTTGTTCGTTTATGTTAA
1 TTCATTTGTGTTCGTTTATGTTAA
*
748884 TTTA-TTGTGTTCGTTTATGCTT-A
1 TTCATTTGTGTTCGTTTATG-TTAA
748907 TTCATTTGTGTTCGTTTA
1 TTCATTTGTGTTCGTTTA
748925 CATTCTTTTA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
23 18 0.50
24 18 0.50
ACGTcount: A:0.14, C:0.09, G:0.15, T:0.62
Consensus pattern (24 bp):
TTCATTTGTGTTCGTTTATGTTAA
Found at i:748954 original size:32 final size:32
Alignment explanation
Indices: 748905--748991 Score: 156
Period size: 32 Copynumber: 2.7 Consensus size: 32
748895 CGTTTATGCT
*
748905 TATTCATTTGTGTTCGTTTACATTCTTTTATTG
1 TATTCA-TTATGTTCGTTTACATTCTTTTATTG
748938 TATTCATTATGTTCGTTTACATTCTTTTATTG
1 TATTCATTATGTTCGTTTACATTCTTTTATTG
748970 TATTCATTATGTTCGTTTACAT
1 TATTCATTATGTTCGTTTACAT
748992 ATGTTCGTTT
Statistics
Matches: 53, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
32 47 0.89
33 6 0.11
ACGTcount: A:0.18, C:0.13, G:0.10, T:0.59
Consensus pattern (32 bp):
TATTCATTATGTTCGTTTACATTCTTTTATTG
Found at i:749018 original size:13 final size:13
Alignment explanation
Indices: 749000--749026 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
748990 ATATGTTCGT
749000 TTGTGTTCGTTTA
1 TTGTGTTCGTTTA
749013 TTGTGTTCGTTTA
1 TTGTGTTCGTTTA
749026 T
1 T
749027 CATTTAAATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.07, C:0.07, G:0.22, T:0.63
Consensus pattern (13 bp):
TTGTGTTCGTTTA
Found at i:750837 original size:14 final size:14
Alignment explanation
Indices: 750820--750847 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
750810 ATCATAACAA
750820 AATTATATAACTAT
1 AATTATATAACTAT
750834 AATTATATAACTAT
1 AATTATATAACTAT
750848 TCTTTCACTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (14 bp):
AATTATATAACTAT
Found at i:751161 original size:17 final size:18
Alignment explanation
Indices: 751139--751172 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
751129 TCAGCCGGTC
751139 CGGTTC-GAACGGTTCAG
1 CGGTTCTGAACGGTTCAG
*
751156 CGGTTCTGACCGGTTCA
1 CGGTTCTGAACGGTTCA
751173 CTAATAACGG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.15, C:0.26, G:0.32, T:0.26
Consensus pattern (18 bp):
CGGTTCTGAACGGTTCAG
Found at i:751415 original size:39 final size:40
Alignment explanation
Indices: 751372--751495 Score: 107
Period size: 39 Copynumber: 3.2 Consensus size: 40
751362 TGCTCCATGT
751372 GTCTTCAAGCTAAAT-ATA-AAGA-CCTCACAACTGCATGGC
1 GTCTTCAAGCTAAATGA-AGAAGATCC-CACAACTGCATGGC
* * *
751411 GTCTTC-AGGTAAATGAAGAAGATCCCACGACTGCATGGT
1 GTCTTCAAGCTAAATGAAGAAGATCCCACAACTGCATGGC
* ** * *
751450 GTCTTCAAGC-AAATTG-AGAAGACCCCAGGAGTGCACGGC
1 GTCTTCAAGCTAAA-TGAAGAAGATCCCACAACTGCATGGC
751489 GTCTTCA
1 GTCTTCA
751496 GACCAATAAG
Statistics
Matches: 71, Mismatches: 9, Indels: 10
0.79 0.10 0.11
Matches are distributed among these distances:
38 8 0.11
39 57 0.80
40 6 0.08
ACGTcount: A:0.31, C:0.24, G:0.23, T:0.22
Consensus pattern (40 bp):
GTCTTCAAGCTAAATGAAGAAGATCCCACAACTGCATGGC
Found at i:754583 original size:31 final size:31
Alignment explanation
Indices: 754545--754603 Score: 109
Period size: 31 Copynumber: 1.9 Consensus size: 31
754535 AAAGGTTACA
*
754545 AAATGGTCCTCAAATTTATCGAATGATTGCG
1 AAATGGTCATCAAATTTATCGAATGATTGCG
754576 AAATGGTCATCAAATTTATCGAATGATT
1 AAATGGTCATCAAATTTATCGAATGATT
754604 AAAAAATGAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.36, C:0.14, G:0.17, T:0.34
Consensus pattern (31 bp):
AAATGGTCATCAAATTTATCGAATGATTGCG
Found at i:754611 original size:31 final size:31
Alignment explanation
Indices: 754544--754616 Score: 101
Period size: 31 Copynumber: 2.4 Consensus size: 31
754534 CAAAGGTTAC
* **
754544 AAAATGGTCCTCAAATTTATCGAATGATTGC
1 AAAATGGTCATCAAATTTATCGAATGATTAA
*
754575 GAAATGGTCATCAAATTTATCGAATGATTAA
1 AAAATGGTCATCAAATTTATCGAATGATTAA
*
754606 AAAATGATCAT
1 AAAATGGTCAT
754617 TGATTTATCA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.41, C:0.12, G:0.15, T:0.32
Consensus pattern (31 bp):
AAAATGGTCATCAAATTTATCGAATGATTAA
Found at i:755016 original size:31 final size:31
Alignment explanation
Indices: 754973--755049 Score: 127
Period size: 31 Copynumber: 2.5 Consensus size: 31
754963 TTTTTAAAGG
754973 TTACAAAATGGTCATCAAAATTATCGAATGA
1 TTACAAAATGGTCATCAAAATTATCGAATGA
* * *
755004 TTGCGAAATGGTCATCAAATTTATCGAATGA
1 TTACAAAATGGTCATCAAAATTATCGAATGA
755035 TTACAAAATGGTCAT
1 TTACAAAATGGTCAT
755050 TGATTGATCA
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.40, C:0.13, G:0.16, T:0.31
Consensus pattern (31 bp):
TTACAAAATGGTCATCAAAATTATCGAATGA
Found at i:756043 original size:2 final size:2
Alignment explanation
Indices: 756038--756071 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
756028 AATTAACAAT
756038 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
756072 GTTATCAATC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:761033 original size:13 final size:13
Alignment explanation
Indices: 761015--761039 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
761005 AAATACCCTT
761015 AATTTTTTTTTCA
1 AATTTTTTTTTCA
761028 AATTTTTTTTTC
1 AATTTTTTTTTC
761040 TTCTGTCATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.08, G:0.00, T:0.72
Consensus pattern (13 bp):
AATTTTTTTTTCA
Found at i:761668 original size:21 final size:20
Alignment explanation
Indices: 761644--761682 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
761634 TTTAATATCA
*
761644 AAATAAATAAGATATGAAATG
1 AAATAAATAA-AAATGAAATG
761665 AAATAAATAAAAATGAAA
1 AAATAAATAAAAATGAAA
761683 GTTCAAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.69, C:0.00, G:0.10, T:0.21
Consensus pattern (20 bp):
AAATAAATAAAAATGAAATG
Found at i:763176 original size:33 final size:33
Alignment explanation
Indices: 763136--763198 Score: 117
Period size: 33 Copynumber: 1.9 Consensus size: 33
763126 AATCTAGTTG
763136 AAAAAATCAATATTTCGAGTCGAGTCGAATGAA
1 AAAAAATCAATATTTCGAGTCGAGTCGAATGAA
*
763169 AAAAAATCAATTTTTCGAGTCGAGTCGAAT
1 AAAAAATCAATATTTCGAGTCGAGTCGAAT
763199 TTTACTCACC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.43, C:0.13, G:0.17, T:0.27
Consensus pattern (33 bp):
AAAAAATCAATATTTCGAGTCGAGTCGAATGAA
Found at i:764019 original size:15 final size:16
Alignment explanation
Indices: 763999--764031 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
763989 AAAATACAAC
763999 ATTCCC-AATAATCTT
1 ATTCCCTAATAATCTT
*
764014 ATTCCCTGATAATCTT
1 ATTCCCTAATAATCTT
764030 AT
1 AT
764032 ATTCCGTGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.30, C:0.24, G:0.03, T:0.42
Consensus pattern (16 bp):
ATTCCCTAATAATCTT
Found at i:769291 original size:54 final size:53
Alignment explanation
Indices: 769209--769315 Score: 196
Period size: 54 Copynumber: 2.0 Consensus size: 53
769199 TTTGGCACTT
*
769209 TGGCTACCTATTGTCAAACCCTAGACCTTGAAATGAGTTATAAGAGCATCTCCA
1 TGGCTACCTATTGTCAAACCCTAAACCTT-AAATGAGTTATAAGAGCATCTCCA
769263 TGGCTACCTATTGTCAAACCCTAAACCTTAAATGAGTTATAAGAGCATCTCCA
1 TGGCTACCTATTGTCAAACCCTAAACCTTAAATGAGTTATAAGAGCATCTCCA
769316 ACGCTGCGCT
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
53 24 0.46
54 28 0.54
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.28
Consensus pattern (53 bp):
TGGCTACCTATTGTCAAACCCTAAACCTTAAATGAGTTATAAGAGCATCTCCA
Found at i:769538 original size:20 final size:20
Alignment explanation
Indices: 769503--769548 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
769493 ATAATCATAT
*
769503 TTTTTTTGTGATTTTTCGGA
1 TTTTTTTGTGATTTTTAGGA
*
769523 TTTTTTTGT-ATTTTTTATGA
1 TTTTTTTGTGA-TTTTTAGGA
769543 TTTTTT
1 TTTTTT
769549 ATATTTGTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 1 0.04
20 22 0.96
ACGTcount: A:0.11, C:0.02, G:0.13, T:0.74
Consensus pattern (20 bp):
TTTTTTTGTGATTTTTAGGA
Found at i:772406 original size:92 final size:92
Alignment explanation
Indices: 772244--772816 Score: 755
Period size: 92 Copynumber: 6.3 Consensus size: 92
772234 ATAACATGTG
* * *
772244 AACCTCCATACAAGATAGTCAGTTATTTTCGAGTTCTCAGTCCGATTTCTATCTCATTTAAGTGA
1 AACCTTCATACAAGATAGTGAGTTATTTTCGAGTTCTCAATCCGATTTCTATCTCATTTAAGTGA
772309 GAGTAAATACTATGCCCTTGAGAAGTA
66 GAGTAAATACTATGCCCTTGAGAAGTA
* ** *
772336 AACCTTCATACAAGATAGTGAGTTATTTTCGAGTTCTTAATATGATTTCTATCTCATTTAAGTGT
1 AACCTTCATACAAGATAGTGAGTTATTTTCGAGTTCTCAATCCGATTTCTATCTCATTTAAGTGA
* * * *
772401 TAGTAAATACCACGCCCTTGAGAATTA
66 GAGTAAATACTATGCCCTTGAGAAGTA
* * *
772428 AACCTTCGTACAATATAGTGAGTTATTTTCGGGTTCTCAA-CCTGATTTCTATCTCATTTAAGTG
1 AACCTTCATACAAGATAGTGAGTTATTTTCGAGTTCTCAATCC-GATTTCTATCTCATTTAAGTG
** *
772492 AGAGTAAATGTTATGCCCTTGAGAAATA
65 AGAGTAAATACTATGCCCTTGAGAAGTA
* *
772520 AACCTTCATACAAGATAGTGAGTTATTTTCGAGTTCTCAACCCGATATCTATCTCATTTAAGTGA
1 AACCTTCATACAAGATAGTGAGTTATTTTCGAGTTCTCAATCCGATTTCTATCTCATTTAAGTGA
*
772585 GAGTAAATACTATGCCATTGAGAAGTA
66 GAGTAAATACTATGCCCTTGAGAAGTA
* *
772612 AACCTTCATTCAAGATAGTGAGTTATTTTCGAGTTCTC-ATCCCATTTCTATCTCATTTAAGT--
1 AACCTTCATACAAGATAGTGAGTTATTTTCGAGTTCTCAATCCGATTTCTATCTCATTTAAGTGA
772674 GAGT-AATACTATGCCCTTGAGAAGTA
66 GAGTAAATACTATGCCCTTGAGAAGTA
* * * ** * * *
772700 AACCTTCATACAAGATAATGAGTTATTTTCGAGTTCTTAACCCGAGCTCTATCCCATTTAAATGG
1 AACCTTCATACAAGATAGTGAGTTATTTTCGAGTTCTCAATCCGATTTCTATCTCATTTAAGTGA
* * **
772765 GAGCAAATACTATGCCATCAAG-AGTTA
66 GAGTAAATACTATGCCCTTGAGAAG-TA
*
772792 AACC-TCTATATAAGATAGTGAGTTA
1 AACCTTC-ATACAAGATAGTGAGTTA
772817 CATTCGAGAT
Statistics
Matches: 421, Mismatches: 52, Indels: 16
0.86 0.11 0.03
Matches are distributed among these distances:
88 56 0.13
89 22 0.05
91 28 0.07
92 313 0.74
93 2 0.00
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.35
Consensus pattern (92 bp):
AACCTTCATACAAGATAGTGAGTTATTTTCGAGTTCTCAATCCGATTTCTATCTCATTTAAGTGA
GAGTAAATACTATGCCCTTGAGAAGTA
Found at i:781142 original size:100 final size:102
Alignment explanation
Indices: 780954--781155 Score: 268
Period size: 100 Copynumber: 2.0 Consensus size: 102
780944 GACAGAGTAG
* *
780954 AATGCATGAAAAAGATTCATATAATATGCTACATGAACTTAAATTCTTGGTGTTGGCAACAATCT
1 AATGCATGAAAAAGATTCATATAATATGCTACATGAACTTAAATTCTTGGTATTGGAAACAATCT
*
781019 ATTGGCAGTGAATGAGAATTTTCAAGGATTTATAGTT
66 ATTGGCAGTGAATGAGAAATTTCAAGGATTTATAGTT
** * * * *
781056 AATGCATGAAATTGATT-A-AT-ATATGCTACATGAGCTTATATTCTTTGTATTGGAAATAATGC
1 AATGCATGAAAAAGATTCATATAATATGCTACATGAACTTAAATTCTTGGTATTGGAAACAAT-C
*
781118 TATTGGCAGTGAAAT-AGAAATTTCAGGGATTTATAGTT
65 TATTGGCAGTG-AATGAGAAATTTCAAGGATTTATAGTT
781156 TTAATTTACA
Statistics
Matches: 88, Mismatches: 10, Indels: 6
0.85 0.10 0.06
Matches are distributed among these distances:
99 34 0.39
100 35 0.40
101 4 0.05
102 15 0.17
ACGTcount: A:0.36, C:0.09, G:0.19, T:0.36
Consensus pattern (102 bp):
AATGCATGAAAAAGATTCATATAATATGCTACATGAACTTAAATTCTTGGTATTGGAAACAATCT
ATTGGCAGTGAATGAGAAATTTCAAGGATTTATAGTT
Found at i:800206 original size:27 final size:27
Alignment explanation
Indices: 800175--800231 Score: 87
Period size: 27 Copynumber: 2.1 Consensus size: 27
800165 AATTATGTGC
* * *
800175 TTAATTTACTATTATGATTGTAAATCT
1 TTAATTTACAAGTATGATTATAAATCT
800202 TTAATTTACAAGTATGATTATAAATCT
1 TTAATTTACAAGTATGATTATAAATCT
800229 TTA
1 TTA
800232 TTGTAATTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.37, C:0.07, G:0.07, T:0.49
Consensus pattern (27 bp):
TTAATTTACAAGTATGATTATAAATCT
Found at i:800545 original size:15 final size:15
Alignment explanation
Indices: 800526--800562 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
800516 TTAATAATTT
800526 TATATTTTA-TTATA
1 TATATTTTAGTTATA
800540 TA-ATATTTAGTTATA
1 TATAT-TTTAGTTATA
800555 TATATTTT
1 TATATTTT
800563 TAAAAAATTG
Statistics
Matches: 20, Mismatches: 0, Indels: 5
0.80 0.00 0.20
Matches are distributed among these distances:
13 2 0.10
14 6 0.30
15 10 0.50
16 2 0.10
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (15 bp):
TATATTTTAGTTATA
Found at i:807874 original size:180 final size:180
Alignment explanation
Indices: 807535--807878 Score: 399
Period size: 180 Copynumber: 1.9 Consensus size: 180
807525 CTGTTCCCAG
* * * *
807535 CAATCCACTCTTCTTCTGGGAATTTTGACAAACCACTGGCCTGCCTGACAACGGTTGCTCAATAA
1 CAATCCACTCCTCTGCTGGGAATTTTGACAAACCACCGGCCTGCCTGACAACGATTGCTCAATAA
* * *
807600 ACTCAAGCTCACTGGCATTGGTTCCTGGGGTTATTGAAAACCCAGATGGGATTTCACCTGAGATT
66 ACTCAAGCTCACTGCCAGTGGTTCCTGGAGTTATTGAAAACCCAGATGGGATTTCACCTGAGATT
* * * *
807665 ACTTTAACAGCTCCAAAAATGTCAGTTATTTCATTCCGCTTCTTTTCCAC
131 AATTCAACAGATCCAAAAATATCAGTTATTTCATTCCGCTTCTTTTCCAC
* * * * *
807715 CAATTCACTCCTCTGCTGGGCATTTTGACAAA-CACCCGGCCT-TCTAGACAACGATTGTTCCAT
1 CAATCCACTCCTCTGCTGGGAATTTTGACAAACCA-CCGGCCTGCCT-GACAACGATTGCTCAAT
* * * ** * * *
807778 GAATTCAAGCTCCCTGCCAGTGGTTTGTGGAGTTATTGAAAACCCTGATTTGG-TTTCATCTG-G
64 AAACTCAAGCTCACTGCCAGTGGTTCCTGGAGTTATTGAAAACCCAGA-TGGGATTTCACCTGAG
*
807841 AGTTAATTCAACAGATCCTAAAATATCAGTTATTTCAT
128 A-TTAATTCAACAGATCCAAAAATATCAGTTATTTCAT
807879 GGAAGAGTGA
Statistics
Matches: 135, Mismatches: 25, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
179 6 0.04
180 126 0.93
181 3 0.02
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.32
Consensus pattern (180 bp):
CAATCCACTCCTCTGCTGGGAATTTTGACAAACCACCGGCCTGCCTGACAACGATTGCTCAATAA
ACTCAAGCTCACTGCCAGTGGTTCCTGGAGTTATTGAAAACCCAGATGGGATTTCACCTGAGATT
AATTCAACAGATCCAAAAATATCAGTTATTTCATTCCGCTTCTTTTCCAC
Found at i:811956 original size:22 final size:22
Alignment explanation
Indices: 811930--811974 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
811920 CATTACTCGC
811930 TCGGCCTTTTCGACCGATCTTT
1 TCGGCCTTTTCGACCGATCTTT
811952 TCGGCCTTTTCGACCGATCTTT
1 TCGGCCTTTTCGACCGATCTTT
811974 T
1 T
811975 AGGCAATTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.09, C:0.31, G:0.18, T:0.42
Consensus pattern (22 bp):
TCGGCCTTTTCGACCGATCTTT
Found at i:827933 original size:60 final size:60
Alignment explanation
Indices: 827788--827958 Score: 272
Period size: 59 Copynumber: 2.9 Consensus size: 60
827778 TCACATAAAA
* * * * *
827788 TTAAGTACTTGTTTTGACCAAAGAATAGTGTAGGGACTTAAAACAAAAAAGAGACATAGT
1 TTAAGTGCTTATTTTGACCAAAAAATAGTTTAGGGACTTAAAACAAAAAAGAGACATAAT
* *
827848 TTAAGGGCTTA-TTTGACCAGAAAATAGTTTAGGGACTTAAAACAAAAAAGAGACATAAT
1 TTAAGTGCTTATTTTGACCAAAAAATAGTTTAGGGACTTAAAACAAAAAAGAGACATAAT
827907 TTAAGTGCTTATTTTGACCAAAAAATAGTTTAGGGACTTAAAACAAAAAAGA
1 TTAAGTGCTTATTTTGACCAAAAAATAGTTTAGGGACTTAAAACAAAAAAGA
827959 TAAAGTTTAA
Statistics
Matches: 101, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
59 54 0.53
60 47 0.47
ACGTcount: A:0.45, C:0.10, G:0.18, T:0.27
Consensus pattern (60 bp):
TTAAGTGCTTATTTTGACCAAAAAATAGTTTAGGGACTTAAAACAAAAAAGAGACATAAT
Found at i:832067 original size:21 final size:20
Alignment explanation
Indices: 832027--832075 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 20
832017 TGTTTAATTC
*
832027 ATTAAATTATATTAAATTAA
1 ATTAAATTATATAAAATTAA
832047 GATTAAATT-TATAAAATTTAA
1 -ATTAAATTATATAAAA-TTAA
832068 ACTTAAAT
1 A-TTAAAT
832076 ATTTTATTGT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
20 7 0.28
21 18 0.72
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (20 bp):
ATTAAATTATATAAAATTAA
Found at i:835193 original size:16 final size:15
Alignment explanation
Indices: 835172--835205 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
835162 CTTGTTTATT
835172 AAAATAAAAATATAAA
1 AAAAT-AAAATATAAA
*
835188 AAAATATAATATAAA
1 AAAATAAAATATAAA
835203 AAA
1 AAA
835206 TGAAAAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (15 bp):
AAAATAAAATATAAA
Found at i:841124 original size:16 final size:16
Alignment explanation
Indices: 841097--841135 Score: 53
Period size: 18 Copynumber: 2.4 Consensus size: 16
841087 AAAATACAAC
841097 ATTCCCAGTAATC-AT
1 ATTCCCAGTAATCTAT
841112 ATTCCCTAGTAATCTTAT
1 ATTCCC-AGTAATC-TAT
841130 ATTCCC
1 ATTCCC
841136 CTTGATAATC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 6 0.29
16 7 0.33
18 8 0.38
ACGTcount: A:0.28, C:0.28, G:0.05, T:0.38
Consensus pattern (16 bp):
ATTCCCAGTAATCTAT
Found at i:844365 original size:97 final size:100
Alignment explanation
Indices: 844192--844407 Score: 287
Period size: 97 Copynumber: 2.2 Consensus size: 100
844182 GGTGCGCTAG
* * *
844192 GATGAACATGAAACAAATGGACTATGGATTGGATGCATCCATGAATGAAAGACAAGTGGACTATG
1 GATGAACATCAAACAAATGGACTATGGATTGGA--CATCCATGAATGAAAGACAAATGAACTATG
* *
844257 GAAGAATAAGACACCTGATAAAAATTGAAGACGA-TAA
64 GAACAACAAGACACCTGATAAAAATTGAAGAC-ACTAA
* *
844294 GATGAACATCAAACATATGGACTATGGA-T-GA-ATCCATGAATGAAGGACAAATGAACTATGGA
1 GATGAACATCAAACAAATGGACTATGGATTGGACATCCATGAATGAAAGACAAATGAACTATGGA
* *
844356 ACAACAAGACACCTGGTCAAAATTGAAGACACTAA
66 ACAACAAGACACCTGATAAAAATTGAAGACACTAA
*
844391 TATGAACATCAAACAAA
1 GATGAACATCAAACAAA
844408 GTTCAATGAA
Statistics
Matches: 102, Mismatches: 11, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
96 1 0.01
97 72 0.71
100 2 0.02
101 1 0.01
102 26 0.25
ACGTcount: A:0.46, C:0.14, G:0.20, T:0.19
Consensus pattern (100 bp):
GATGAACATCAAACAAATGGACTATGGATTGGACATCCATGAATGAAAGACAAATGAACTATGGA
ACAACAAGACACCTGATAAAAATTGAAGACACTAA
Found at i:845674 original size:37 final size:38
Alignment explanation
Indices: 845625--845704 Score: 144
Period size: 37 Copynumber: 2.1 Consensus size: 38
845615 TTAACTTCTG
845625 ATTTCTATAATTGAAACCAATTTAATTATTAAATTAAT
1 ATTTCTATAATTGAAACCAATTTAATTATTAAATTAAT
*
845663 ATTTCTA-AATTGTAACCAATTTAATTATTAAATTAAT
1 ATTTCTATAATTGAAACCAATTTAATTATTAAATTAAT
845700 ATTTC
1 ATTTC
845705 AAACCCAAAA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
37 34 0.83
38 7 0.17
ACGTcount: A:0.42, C:0.09, G:0.03, T:0.46
Consensus pattern (38 bp):
ATTTCTATAATTGAAACCAATTTAATTATTAAATTAAT
Found at i:861832 original size:216 final size:216
Alignment explanation
Indices: 861458--862518 Score: 2106
Period size: 216 Copynumber: 4.9 Consensus size: 216
861448 CTCGATGAAC
*
861458 CTCCAAAATTAACCATGGAGCTATTCTACTTCCTGGACTGACTAGATCGAGAACCATGTCGAACA
1 CTCCAAAATTAACCATGGAGCTATTCTACTTCCTGGACTGACTAGATCGAGAACCACGTCGAACA
861523 CTGCCATTGAATCTAGAATACCCTGACTGTACTGAAGAATCCACTATCCAAATCGACCAAGTTAA
66 CTGCCATTGAATCTAGAATACCCTGACTGTACTGAAGAATCCACTATCCAAATCGACCAAGTTAA
861588 CGTCTACCACTCGATACAGTTCAGCTGTAGATTCCTTGACAACCTTGGTCTTCATGATCATCATA
131 CGTCTACCACTCGATACAGTTCAGCTGTAGATTCCTTGACAACCTTGGTCTTCATGATCATCATA
861653 ATTCATATCCAAAATCCTTTG
196 ATTCATATCCAAAATCCTTTG
861674 CTCCAAAATTAACCATGGAGCTATTCTACTTCCTGGACTGACTAGATCGAGAACCACGTCGAACA
1 CTCCAAAATTAACCATGGAGCTATTCTACTTCCTGGACTGACTAGATCGAGAACCACGTCGAACA
861739 CTGCCATTGAATCTAGAATACCCTGACTGTACTGAAGAATCCACTATCCAAATCGACCAAGTTAA
66 CTGCCATTGAATCTAGAATACCCTGACTGTACTGAAGAATCCACTATCCAAATCGACCAAGTTAA
861804 CGTCTACCACTCGATACAGTTCAGCTGTAGATTCCTTGACAACCTTGGTCTTCATGATCATCATA
131 CGTCTACCACTCGATACAGTTCAGCTGTAGATTCCTTGACAACCTTGGTCTTCATGATCATCATA
861869 ATTCATATCCAAAATCCTTTG
196 ATTCATATCCAAAATCCTTTG
861890 CTCCAAAATTAACCATGGAGCTATTCTACTTCCTGGACTGACTAGATCGAGAACCACGTCGAACA
1 CTCCAAAATTAACCATGGAGCTATTCTACTTCCTGGACTGACTAGATCGAGAACCACGTCGAACA
861955 CTGCCATTGAATCTAGAATACCCTGACTGTACTGAAGAATCCACTATCCAAATCGACCAAGTTAA
66 CTGCCATTGAATCTAGAATACCCTGACTGTACTGAAGAATCCACTATCCAAATCGACCAAGTTAA
862020 CGTCTACCACTCGATACAGTTCAGCTGTAGATTCCTTGACAACCTTGGTCTTCATGATCATCATA
131 CGTCTACCACTCGATACAGTTCAGCTGTAGATTCCTTGACAACCTTGGTCTTCATGATCATCATA
862085 ATTCATATCCAAAATCCTTTG
196 ATTCATATCCAAAATCCTTTG
862106 CTCCAAAATTAACCATGGAGCTATTCTACTTCCTGGACTGACTAGATCGAGAACCACGTCGAACA
1 CTCCAAAATTAACCATGGAGCTATTCTACTTCCTGGACTGACTAGATCGAGAACCACGTCGAACA
862171 CTGCCATTGAATCTAGAATACCCTGACTGTACTGAAGAATCCACTATCCAAATCGACCAAGTTAA
66 CTGCCATTGAATCTAGAATACCCTGACTGTACTGAAGAATCCACTATCCAAATCGACCAAGTTAA
862236 CGTCTACCACTCGATACAGTTCAGCTGTAGATTCCTTGACAACCTTGGTCTTCATGATCATCATA
131 CGTCTACCACTCGATACAGTTCAGCTGTAGATTCCTTGACAACCTTGGTCTTCATGATCATCATA
862301 A-TCATATCCAAAATCCTTTG
196 ATTCATATCCAAAATCCTTTG
862321 CTCCAAAATTAACCATGGAGCTATTCTACTTCCTGGACTGACTAGATCGAGAACCACGTCGAACA
1 CTCCAAAATTAACCATGGAGCTATTCTACTTCCTGGACTGACTAGATCGAGAACCACGTCGAACA
862386 CTGCCATTGAATCTAGAATACCCTGACTGTACTGAAGAATCCACTATCCAAATCGACCAAGTTAA
66 CTGCCATTGAATCTAGAATACCCTGACTGTACTGAAGAATCCACTATCCAAATCGACCAAGTTAA
862451 CGTCTACCACTCGATACAGTTCAGCTGTAGATTCCTTGACAACCTTGGTCTTCATGATCATCATA
131 CGTCTACCACTCGATACAGTTCAGCTGTAGATTCCTTGACAACCTTGGTCTTCATGATCATCATA
862516 ATT
196 ATT
862519 ACATTCTTCC
Statistics
Matches: 843, Mismatches: 1, Indels: 2
1.00 0.00 0.00
Matches are distributed among these distances:
215 215 0.26
216 628 0.74
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.28
Consensus pattern (216 bp):
CTCCAAAATTAACCATGGAGCTATTCTACTTCCTGGACTGACTAGATCGAGAACCACGTCGAACA
CTGCCATTGAATCTAGAATACCCTGACTGTACTGAAGAATCCACTATCCAAATCGACCAAGTTAA
CGTCTACCACTCGATACAGTTCAGCTGTAGATTCCTTGACAACCTTGGTCTTCATGATCATCATA
ATTCATATCCAAAATCCTTTG
Found at i:863197 original size:31 final size:31
Alignment explanation
Indices: 863146--863232 Score: 110
Period size: 31 Copynumber: 2.9 Consensus size: 31
863136 AGTTTATCCT
863146 TTTTAGAT-AAATA--AATTTAAACCCTAAA
1 TTTTAGATAAAATATCAATTTAAACCCTAAA
* *
863174 TTTTAGATAAAATATCAATTTAAACCTTACA
1 TTTTAGATAAAATATCAATTTAAACCCTAAA
* *
863205 CTTTAGATAAAA-ATCAATTTAACCCCTA
1 TTTTAGATAAAATATCAATTTAAACCCTA
863233 GATCCAATCT
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
28 8 0.16
29 5 0.10
30 14 0.27
31 24 0.47
ACGTcount: A:0.46, C:0.15, G:0.03, T:0.36
Consensus pattern (31 bp):
TTTTAGATAAAATATCAATTTAAACCCTAAA
Found at i:865911 original size:16 final size:16
Alignment explanation
Indices: 865890--865960 Score: 97
Period size: 16 Copynumber: 4.4 Consensus size: 16
865880 GGTATTACCC
865890 GACCTGTTTTCAACCT
1 GACCTGTTTTCAACCT
865906 GACCTGTTTTCAACCT
1 GACCTGTTTTCAACCT
* * *
865922 AACTTGTTTTTAACCT
1 GACCTGTTTTCAACCT
* *
865938 GACATGTTTTTAACCT
1 GACCTGTTTTCAACCT
865954 GACCTGT
1 GACCTGT
865961 AAATGATCCG
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 49 1.00
ACGTcount: A:0.21, C:0.25, G:0.13, T:0.41
Consensus pattern (16 bp):
GACCTGTTTTCAACCT
Found at i:866252 original size:14 final size:14
Alignment explanation
Indices: 866230--866276 Score: 50
Period size: 14 Copynumber: 3.7 Consensus size: 14
866220 TGCAAAGTAA
*
866230 AATTAATATAGTTT
1 AATTTATATAGTTT
866244 AATTTATATA----
1 AATTTATATAGTTT
866254 AA-TTATATAGTTT
1 AATTTATATAGTTT
866267 AATTTATATA
1 AATTTATATA
866277 AAGAAAAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 10
0.71 0.03 0.26
Matches are distributed among these distances:
9 7 0.26
10 2 0.07
13 2 0.07
14 16 0.59
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (14 bp):
AATTTATATAGTTT
Found at i:866263 original size:23 final size:24
Alignment explanation
Indices: 866229--866278 Score: 93
Period size: 23 Copynumber: 2.1 Consensus size: 24
866219 ATGCAAAGTA
866229 AAATTAATATAGTTTAATTTATAT
1 AAATTAATATAGTTTAATTTATAT
866253 AAATT-ATATAGTTTAATTTATAT
1 AAATTAATATAGTTTAATTTATAT
866276 AAA
1 AAA
866279 GAAAAAATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 21 0.81
24 5 0.19
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (24 bp):
AAATTAATATAGTTTAATTTATAT
Found at i:866563 original size:48 final size:49
Alignment explanation
Indices: 866505--866599 Score: 140
Period size: 49 Copynumber: 2.0 Consensus size: 49
866495 ACGATTTACA
* *
866505 GTTTCTATAAACTATATACA-TTA-TTACTTTATATAGTTTATGTATAGT
1 GTTTCTATAAACTATATA-AGTAATTTACTTTATATAGTTTATATATAGT
*
866553 GTTTCTATAAACTATATAAGTAATTTATTTTATATAGTTTATATATA
1 GTTTCTATAAACTATATAAGTAATTTACTTTATATAGTTTATATATA
866600 TTTATATATA
Statistics
Matches: 42, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
47 1 0.02
48 20 0.48
49 21 0.50
ACGTcount: A:0.36, C:0.06, G:0.07, T:0.51
Consensus pattern (49 bp):
GTTTCTATAAACTATATAAGTAATTTACTTTATATAGTTTATATATAGT
Found at i:867449 original size:13 final size:13
Alignment explanation
Indices: 867402--867438 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
867392 GTCATAACCC
867402 GACCCGACCCGTT
1 GACCCGACCCGTT
* *
867415 TACCCGACCAGTT
1 GACCCGACCCGTT
867428 GACCCGACCCG
1 GACCCGACCCG
867439 ACCCGTTGAC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.19, C:0.46, G:0.22, T:0.14
Consensus pattern (13 bp):
GACCCGACCCGTT
Found at i:868789 original size:18 final size:18
Alignment explanation
Indices: 868763--868798 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
868753 TCGAAAGGAC
*
868763 TGAAGTAAATGATAAGAT
1 TGAAGTAAATAATAAGAT
*
868781 TGAATTAAATAATAAGAT
1 TGAAGTAAATAATAAGAT
868799 CGGATGGAAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.53, C:0.00, G:0.17, T:0.31
Consensus pattern (18 bp):
TGAAGTAAATAATAAGAT
Found at i:869928 original size:24 final size:24
Alignment explanation
Indices: 869908--869983 Score: 91
Period size: 24 Copynumber: 3.2 Consensus size: 24
869898 ATTTGATTTC
869908 TGACATGGATTCTGATCTGATACT
1 TGACATGGATTCTGATCTGATACT
* *
869932 TGACTTGGATTCTGATCTGTTACT
1 TGACATGGATTCTGATCTGATACT
* * *
869956 TGACCT-GATTTTTGATATGATACT
1 TGACATGGA-TTCTGATCTGATACT
869980 TGAC
1 TGAC
869984 CTGATTTATA
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
23 2 0.04
24 43 0.96
ACGTcount: A:0.22, C:0.16, G:0.20, T:0.42
Consensus pattern (24 bp):
TGACATGGATTCTGATCTGATACT
Found at i:869984 original size:24 final size:24
Alignment explanation
Indices: 869917--869990 Score: 96
Period size: 24 Copynumber: 3.1 Consensus size: 24
869907 CTGACATGGA
*
869917 TTCTGATCTGATACTTGACTTGGA-
1 TTCTGATCTGATACTTGACCT-GAT
*
869941 TTCTGATCTGTTACTTGACCTGAT
1 TTCTGATCTGATACTTGACCTGAT
* *
869965 TTTTGATATGATACTTGACCTGAT
1 TTCTGATCTGATACTTGACCTGAT
869989 TT
1 TT
869991 ATATTTTGAT
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
23 2 0.05
24 42 0.95
ACGTcount: A:0.20, C:0.16, G:0.18, T:0.46
Consensus pattern (24 bp):
TTCTGATCTGATACTTGACCTGAT
Found at i:870203 original size:2 final size:2
Alignment explanation
Indices: 870196--870234 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
870186 TTGGATGGGG
870196 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
870235 GTTTTAAAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:870880 original size:25 final size:21
Alignment explanation
Indices: 870832--870871 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
870822 ATACATACAT
870832 ATTATATAAAATTATTTAATA
1 ATTATATAAAATTATTTAATA
870853 ATT-TAATAAAATTATTTAA
1 ATTAT-ATAAAATTATTTAA
870872 ATATAAATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 1 0.06
21 17 0.94
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (21 bp):
ATTATATAAAATTATTTAATA
Found at i:871193 original size:7 final size:7
Alignment explanation
Indices: 871181--871232 Score: 52
Period size: 7 Copynumber: 7.4 Consensus size: 7
871171 TCCATTTATA
871181 TTATGGT
1 TTATGGT
871188 TTATGGT
1 TTATGGT
871195 TTAAT-GT
1 TT-ATGGT
**
871202 TTATAAT
1 TTATGGT
871209 TTATGGT
1 TTATGGT
*
871216 TTAGGGT
1 TTATGGT
*
871223 TTAGGGT
1 TTATGGT
871230 TTA
1 TTA
871233 GTGTTTCTAT
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
6 2 0.05
7 35 0.90
8 2 0.05
ACGTcount: A:0.21, C:0.00, G:0.25, T:0.54
Consensus pattern (7 bp):
TTATGGT
Found at i:871205 original size:21 final size:21
Alignment explanation
Indices: 871181--871232 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 21
871171 TCCATTTATA
*
871181 TTATGGTTTATGGTTTAATGT
1 TTATGGTTTATGGTTTAAGGT
** *
871202 TTATAATTTATGGTTTAGGGT
1 TTATGGTTTATGGTTTAAGGT
*
871223 TTAGGGTTTA
1 TTATGGTTTA
871233 GTGTTTCTAT
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.21, C:0.00, G:0.25, T:0.54
Consensus pattern (21 bp):
TTATGGTTTATGGTTTAAGGT
Found at i:871283 original size:48 final size:49
Alignment explanation
Indices: 871231--871324 Score: 145
Period size: 48 Copynumber: 1.9 Consensus size: 49
871221 GTTTAGGGTT
** *
871231 TAGTGTTTCTATAAACTATATATTTTAT-TATTTTATATAGTTTATGCA
1 TAGTGTTTCTATAAACTATATAAGTAATATATTTTATATAGTTTATGCA
*
871279 TAGTGTTTTTATAAACTATATAAGTAATATATTTTATATAGTTTAT
1 TAGTGTTTCTATAAACTATATAAGTAATATATTTTATATAGTTTAT
871325 ATATATATAT
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
48 24 0.59
49 17 0.41
ACGTcount: A:0.34, C:0.04, G:0.09, T:0.53
Consensus pattern (49 bp):
TAGTGTTTCTATAAACTATATAAGTAATATATTTTATATAGTTTATGCA
Found at i:871325 original size:16 final size:16
Alignment explanation
Indices: 871306--871359 Score: 74
Period size: 16 Copynumber: 3.3 Consensus size: 16
871296 ATATAAGTAA
*
871306 TATATTTTATATAGTT
1 TATATTATATATAGTT
871322 TATA-TATATATATGTT
1 TATATTATATATA-GTT
871338 TATATATATATATAGTT
1 TATAT-TATATATAGTT
871355 TATAT
1 TATAT
871360 ATACTATACA
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
15 7 0.21
16 11 0.32
17 8 0.24
18 8 0.24
ACGTcount: A:0.37, C:0.00, G:0.06, T:0.57
Consensus pattern (16 bp):
TATATTATATATAGTT
Found at i:871359 original size:49 final size:49
Alignment explanation
Indices: 871231--871359 Score: 124
Period size: 49 Copynumber: 2.7 Consensus size: 49
871221 GTTTAGGGTT
* * *
871231 TAGTGTTTCTATAAACTATATAT--TTTATTATTTTATATAGTTTATGCA
1 TAGTATTTTTATAAACTATATATAGTTTA-TATTTTATATAGTTTATACA
* * *
871279 TAGTGTTTTTATAAACTATATA-AGTAATATATTTTATATAGTTTATATA
1 TAGTATTTTTATAAACTATATATAGT-TTATATTTTATATAGTTTATACA
*
871328 TA-TATATGTTTATATA-TATATATAGTTTATAT
1 TAGTAT-T-TTTATAAACTATATATAGTTTATAT
871360 ATACTATACA
Statistics
Matches: 68, Mismatches: 7, Indels: 11
0.79 0.08 0.13
Matches are distributed among these distances:
48 23 0.34
49 33 0.49
50 12 0.18
ACGTcount: A:0.36, C:0.03, G:0.08, T:0.53
Consensus pattern (49 bp):
TAGTATTTTTATAAACTATATATAGTTTATATTTTATATAGTTTATACA
Found at i:871367 original size:16 final size:15
Alignment explanation
Indices: 871313--871367 Score: 74
Period size: 15 Copynumber: 3.4 Consensus size: 15
871303 TAATATATTT
871313 TATATAGTTTATATA
1 TATATAGTTTATATA
871328 TATATATGTTTATATATA
1 TATATA-G-TT-TATATA
871346 TATATAGTTTATATA
1 TATATAGTTTATATA
871361 TACTATA
1 TA-TATA
871368 CATGGTTTAT
Statistics
Matches: 36, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
15 14 0.39
16 7 0.19
17 3 0.08
18 12 0.33
ACGTcount: A:0.40, C:0.02, G:0.05, T:0.53
Consensus pattern (15 bp):
TATATAGTTTATATA
Found at i:872195 original size:14 final size:14
Alignment explanation
Indices: 872176--872230 Score: 65
Period size: 14 Copynumber: 3.9 Consensus size: 14
872166 TTTCATTAGG
*
872176 GTTTATGGTTTAAT
1 GTTTATGGTTTAAA
*
872190 GTTTATAGTTTAAA
1 GTTTATGGTTTAAA
* *
872204 GTTTAGGGTTTAAG
1 GTTTATGGTTTAAA
*
872218 GTTTATGATTTAA
1 GTTTATGGTTTAA
872231 GATTTAAGGT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
14 34 1.00
ACGTcount: A:0.27, C:0.00, G:0.22, T:0.51
Consensus pattern (14 bp):
GTTTATGGTTTAAA
Found at i:872231 original size:14 final size:14
Alignment explanation
Indices: 872175--872236 Score: 54
Period size: 14 Copynumber: 4.4 Consensus size: 14
872165 TTTTCATTAG
*
872175 GGTTTATGGTTTAA
1 GGTTTATGATTTAA
*
872189 TGTTTAT-AGTTTAA
1 GGTTTATGA-TTTAA
* * *
872203 AGTTTAGGGTTTAA
1 GGTTTATGATTTAA
872217 GGTTTATGATTTAA
1 GGTTTATGATTTAA
*
872231 GATTTA
1 GGTTTA
872237 AGGTTTCTAT
Statistics
Matches: 37, Mismatches: 9, Indels: 4
0.74 0.18 0.08
Matches are distributed among these distances:
14 37 1.00
ACGTcount: A:0.27, C:0.00, G:0.23, T:0.50
Consensus pattern (14 bp):
GGTTTATGATTTAA
Found at i:872353 original size:21 final size:21
Alignment explanation
Indices: 872327--872375 Score: 80
Period size: 21 Copynumber: 2.3 Consensus size: 21
872317 TTATATAGTT
872327 TATATATATATAGGTTATATA
1 TATATATATATAGGTTATATA
*
872348 TATATATATATAGTTTATATA
1 TATATATATATAGGTTATATA
872369 TACTATA
1 TA-TATA
872376 CATAATTTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
21 22 0.85
22 4 0.15
ACGTcount: A:0.43, C:0.02, G:0.06, T:0.49
Consensus pattern (21 bp):
TATATATATATAGGTTATATA
Found at i:872370 original size:15 final size:15
Alignment explanation
Indices: 872318--872353 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
872308 TAATTTACTT
*
872318 TATATAGTTTATATA
1 TATATAGGTTATATA
872333 TATATAGGTTATATA
1 TATATAGGTTATATA
872348 TATATA
1 TATATA
872354 TATATAGTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (15 bp):
TATATAGGTTATATA
Found at i:872671 original size:2 final size:2
Alignment explanation
Indices: 872523--872662 Score: 68
Period size: 2 Copynumber: 73.0 Consensus size: 2
872513 ATAGTGTTTC
* *
872523 TA TA -A TA TA TA TA TA TA TA TA -A TC TA TA GA T- TA CT- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA
* * * *
872562 T- TA GT- TA TA CA AA CA TA TA TA TA CTA TA T- TA -A TA TA AA T-
1 TA TA -TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA
* * * *
872601 TA TA -A TT TA TA AA CTA TA TA T- TT TA TA TA GTT TA TA TA TA TA
1 TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA -TA TA TA TA TA TA
872643 TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA
872663 GTTTATATAC
Statistics
Matches: 105, Mismatches: 17, Indels: 32
0.68 0.11 0.21
Matches are distributed among these distances:
1 11 0.10
2 88 0.84
3 6 0.06
ACGTcount: A:0.46, C:0.04, G:0.02, T:0.47
Consensus pattern (2 bp):
TA
Found at i:872676 original size:4 final size:4
Alignment explanation
Indices: 872669--874647 Score: 2468
Period size: 4 Copynumber: 495.8 Consensus size: 4
872659 TATAGTTTAT
* ** * * *
872669 ATAC ATAC ATAC ACAC ATAC ATGT AGAA ACAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
872717 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
872765 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
872813 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
872861 ATAC ATAC AAAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
872909 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
872957 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
873005 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ACAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * ** ** ** ** ** *
873053 ATAC ACAC ATAC ACACGC ACGC ACGC ACGC ACGC AGGC ATAC ATAC ACAC
1 ATAC ATAC ATAC ATA--C ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* ** ** ** ** ** *
873103 ATAC ACACGC ACGC ACGC ACGC ACGC AGGC ATAC ATAC ATAC ATAC ACACGC
1 ATAC ATA--C ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA--C
* * * ** * *
873155 ATGC ATGC ATAC ATGC ACGC ATGC ATGC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
873203 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
873251 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
873299 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
873347 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
873395 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
873443 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
873491 ATAC ATAC ATAC ATAC ATAC -TAC TATAC ATAC ATAC ATAC A-AC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC -ATAC ATAC ATAC ATAC ATAC ATAC
873538 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
873586 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC --AC ACAC ACAC ACAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * ** **
873632 ACAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ACAC ACAC GCAC GCAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
** ** ** ** ** ** ** ** ** ** ** **
873680 GCAC GCAC GCAC GCAC GCAC GCAC GCAC GCAC GCAC GCAC GCAC GCAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
** ** ** ** ** ** ** ** ** ** ** **
873728 GCAC GCAC GCAC GCAC GCAC GCAC GCAC GCAC GCAC GCAC GCAC GCAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
** ** ** ** ** ** ** ** * * *
873776 GCAC GCAC GCAC GCAC GCAC GCAC GCAC GCAC ATAC ACAC ACAC ACAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
** ** ** ** ** ** ** ** ** ** ** **
873824 ACGC ACGC ACGC ACGC ACGC ACGC ACGC ACGC ACGC ACGC AGGC AGGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * *
873872 ATAC ATAC ATAC ATGC ATGC ATGC ATGC ATAC ATGC ATAC ATGC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
873920 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
873968 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
874016 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
874064 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
874112 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC --AC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
874158 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
874206 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC -TAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
874253 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
874301 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
874349 ATAC ATAC ATAC ATAC -TAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
874396 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
874444 ATAC ATAC ATAC ATAC AT-- ATAC ATAC ATAC ATAC ATAC ATAC -TAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
874489 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
874537 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
874585 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATGC ATGC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
874633 ATAT ATAC ATAC ATA
1 ATAC ATAC ATAC ATA
874648 TAGAAAATTA
Statistics
Matches: 1901, Mismatches: 56, Indels: 36
0.95 0.03 0.02
Matches are distributed among these distances:
2 6 0.00
3 15 0.01
4 1869 0.98
5 3 0.00
6 8 0.00
ACGTcount: A:0.46, C:0.28, G:0.04, T:0.21
Consensus pattern (4 bp):
ATAC
Found at i:873101 original size:42 final size:42
Alignment explanation
Indices: 873048--873155 Score: 207
Period size: 42 Copynumber: 2.6 Consensus size: 42
873038 TACACACATA
873048 CATACATACACACATACACACGCACGCACGCACGCACGCAGG
1 CATACATACACACATACACACGCACGCACGCACGCACGCAGG
873090 CATACATACACACATACACACGCACGCACGCACGCACGCAGG
1 CATACATACACACATACACACGCACGCACGCACGCACGCAGG
*
873132 CATACATACATACATACACACGCA
1 CATACATACACACATACACACGCA
873156 TGCATGCATA
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 65 1.00
ACGTcount: A:0.38, C:0.39, G:0.14, T:0.09
Consensus pattern (42 bp):
CATACATACACACATACACACGCACGCACGCACGCACGCAGG
Found at i:873186 original size:42 final size:42
Alignment explanation
Indices: 873048--873195 Score: 206
Period size: 42 Copynumber: 3.4 Consensus size: 42
873038 TACACACATA
*
873048 CATACATACACACATACACACGCACGCACGCACGCACGCAGG
1 CATACATACATACATACACACGCACGCACGCACGCACGCAGG
*
873090 CATACATACACACATACACACGCACGCACGCACGCACGCAGG
1 CATACATACATACATACACACGCACGCACGCACGCACGCAGG
* * *
873132 CATACATACATACATACACACGCATGCATGCATACATGCACGCATG
1 CATACATACATACATACACACGCACGCACGC--AC--GCACGCAGG
*
873178 CATGCATACATACATACA
1 CATACATACATACATACA
873196 TACATACATA
Statistics
Matches: 97, Mismatches: 5, Indels: 4
0.92 0.05 0.04
Matches are distributed among these distances:
42 70 0.72
44 2 0.02
46 25 0.26
ACGTcount: A:0.37, C:0.36, G:0.14, T:0.13
Consensus pattern (42 bp):
CATACATACATACATACACACGCACGCACGCACGCACGCAGG
Found at i:874906 original size:29 final size:29
Alignment explanation
Indices: 874873--874932 Score: 84
Period size: 29 Copynumber: 2.1 Consensus size: 29
874863 TATTCCCTCT
* *
874873 AAATTTCCCAATTTCCCTTTAAATTCTCA
1 AAATTTCCCAATTTCCCTCTAAATTCCCA
* *
874902 AAATTTCCTATTTTCCCTCTAAATTCCCA
1 AAATTTCCCAATTTCCCTCTAAATTCCCA
874931 AA
1 AA
874933 TAAAAAAAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.32, C:0.28, G:0.00, T:0.40
Consensus pattern (29 bp):
AAATTTCCCAATTTCCCTCTAAATTCCCA
Found at i:875066 original size:16 final size:15
Alignment explanation
Indices: 875047--875087 Score: 59
Period size: 14 Copynumber: 2.9 Consensus size: 15
875037 CTTTTTAGTT
*
875047 TATA-AGTTTATGCA
1 TATATAGTTTATACA
875061 TATATAGTTT-TACA
1 TATATAGTTTATACA
875075 TATATAGTTTATA
1 TATATAGTTTATA
875088 TATAGTTCAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
14 17 0.71
15 7 0.29
ACGTcount: A:0.37, C:0.05, G:0.10, T:0.49
Consensus pattern (15 bp):
TATATAGTTTATACA
Found at i:876552 original size:31 final size:30
Alignment explanation
Indices: 876514--876594 Score: 110
Period size: 31 Copynumber: 2.6 Consensus size: 30
876504 TAAGACTCAT
876514 GGGTTAAATTAGTATTTTATCTAATGTTTAA
1 GGGTTAAATTAGTATTTTATCTAATGTTT-A
876545 GGGTTAAATT-GATATTTTATCTAATGTTTA
1 GGGTTAAATTAG-TATTTTATCTAATGTTTA
* *
876575 GGATTTAAATTAATATTTTA
1 GG-GTTAAATTAGTATTTTA
876595 CACAAATTTT
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
30 4 0.09
31 41 0.91
ACGTcount: A:0.33, C:0.02, G:0.15, T:0.49
Consensus pattern (30 bp):
GGGTTAAATTAGTATTTTATCTAATGTTTA
Found at i:877573 original size:34 final size:34
Alignment explanation
Indices: 877535--877603 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
877525 AGCCAACCAG
877535 AATTGAAAAACTATTCTAGTCCTCTCACTTTCAT
1 AATTGAAAAACTATTCTAGTCCTCTCACTTTCAT
*
877569 AATTGAAAAACTTTTCTAGTCCTCTCACTTTCAT
1 AATTGAAAAACTATTCTAGTCCTCTCACTTTCAT
877603 A
1 A
877604 CTTTTAGTTT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.32, C:0.23, G:0.06, T:0.39
Consensus pattern (34 bp):
AATTGAAAAACTATTCTAGTCCTCTCACTTTCAT
Done.