genome.fa.s4119.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004119.1 Hibiscus syriacus cultivar Beakdansim tig00009015_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89348

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
778--808	14	2.2	14	100	0	62	51	0	22	25	1.48
1348--1428	3	27.3	3	97	2	155	34	0	0	65	0.93
5392--5430	14	2.8	14	85	11	53	15	20	5	58	1.55
8343--8385	15	2.9	15	82	0	50	79	0	18	2	0.85
8321--8373	25	2.1	25	82	6	63	75	0	20	3	0.96
10507--10840	114	2.9	114	93	0	580	32	16	20	30	1.95
12731--12888	54	3.0	54	85	6	209	37	17	22	22	1.94
13188--13241	22	2.5	22	93	0	99	35	11	14	38	1.82
13791--14158	185	2.0	185	95	1	666	32	14	14	38	1.86
14359--14421	3	20.3	3	87	6	90	36	0	0	63	0.95
14371--14421	22	2.3	22	100	0	102	33	0	0	66	0.92
15683--15716	17	2.0	17	88	11	52	29	5	0	64	1.17
27719--27833	60	1.9	60	83	0	149	46	3	10	39	1.55
28179--28254	39	2.0	37	82	7	91	47	3	1	47	1.29
30302--30343	18	2.5	16	85	11	57	50	2	7	40	1.43
31631--32019	43	9.1	42	81	3	433	31	20	23	24	1.98
35362--35405	21	2.1	21	100	0	88	38	9	22	29	1.85
36178--36671	41	12.1	41	77	6	423	35	18	18	28	1.94
36178--36662	164	3.0	162	82	5	537	34	18	18	28	1.95
36754--36848	26	3.1	33	73	21	89	47	30	6	15	1.71
36764--36815	26	2.0	26	100	0	104	50	30	3	15	1.62
36790--36865	33	2.3	33	79	0	98	44	32	7	14	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37009--37062	23	2.3	23	96	0	99	20	20	14	44	1.86
38337--38396	31	1.9	31	89	0	93	40	5	10	45	1.60
38869--38914	19	2.6	17	81	15	58	56	0	2	41	1.11
38854--38913	19	3.3	19	77	11	54	61	0	1	36	1.06
38883--39072	21	9.0	21	69	16	65	57	1	0	40	1.12
38908--39063	63	2.5	65	92	7	270	57	1	0	40	1.10
38934--39002	26	2.8	25	82	8	70	56	1	0	42	1.08
38965--39037	24	2.9	27	84	13	93	54	1	0	43	1.08
39025--39075	12	4.3	12	76	18	54	66	1	0	31	1.03
39527--39567	3	13.7	3	100	0	82	65	0	0	34	0.93
47950--47994	18	2.5	17	86	10	63	71	0	2	26	0.98
48110--48170	31	1.9	32	83	3	79	26	8	9	55	1.60
50444--50514	24	3.0	24	79	2	81	29	25	23	21	1.99
58200--58360	60	2.7	60	77	8	175	33	21	3	40	1.71
60887--60933	25	2.0	24	84	12	62	59	0	0	40	0.97
61297--61355	29	2.0	30	83	9	77	59	6	6	27	1.48
62419--62463	20	2.3	19	84	3	54	35	0	2	62	1.08
62414--62469	29	2.0	30	83	13	75	37	0	1	60	1.07
62462--62538	3	25.7	3	94	0	136	63	0	2	33	1.08
62857--63409	113	4.9	113	90	0	858	30	19	13	36	1.90
62857--63409	226	2.5	226	94	1	977	30	19	13	36	1.90
63986--64453	83	5.7	82	90	4	719	37	20	13	28	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63807--64453	165	3.8	167	90	5	916	36	21	13	28	1.91
63813--64453	248	2.5	253	89	6	919	36	21	13	28	1.91
65594--65662	9	7.2	9	76	15	50	4	14	0	81	0.84
65592--65671	15	5.5	14	78	12	81	3	15	0	81	0.83
65593--65671	40	2.0	39	87	2	113	3	13	0	82	0.81
65606--65674	7	9.6	7	73	20	54	4	13	0	82	0.81
65597--65673	29	2.7	29	81	6	93	3	14	0	81	0.82
65617--65669	24	2.2	25	86	10	74	3	11	0	84	0.73
76262--76337	19	4.0	19	72	14	59	68	2	5	23	1.23
77003--77049	25	2.0	24	84	12	62	59	0	0	40	0.97
77409--77467	29	2.0	30	83	9	77	59	6	6	27	1.48
78526--78570	20	2.3	19	84	3	54	35	0	2	62	1.08
78521--78576	29	2.0	30	83	13	75	37	0	1	60	1.07
78569--78636	3	22.7	3	96	0	127	64	0	1	33	1.02
79754--79791	20	2.0	20	89	5	60	55	7	21	15	1.66
86600--86665	31	2.2	30	89	5	105	21	27	13	37	1.91
87981--88058	23	3.3	23	85	1	102	33	23	19	24	1.97
88967--89007	22	1.9	21	90	5	64	7	26	36	29	1.83

Tables:   1

The End!