Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004121.1 Hibiscus syriacus cultivar Beakdansim tig00009019_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75099

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1076--1214
73
1.9
72
81
7
165
43
1
5
48
1.35
1113--1256
36
3.9
36
77
13
141
47
1
5
45
1.34
1237--1270
12
2.9
12
91
4
52
38
8
5
47
1.59
1301--1379
18
4.9
17
74
22
73
46
0
5
48
1.24
1312--1490
73
2.5
69
87
10
270
44
0
5
50
1.28
1309--1507
36
5.6
36
85
7
239
44
0
4
50
1.26
1312--1507
75
2.7
71
87
6
272
43
0
4
51
1.26
1433--1566
59
2.2
61
89
4
200
43
0
2
53
1.18
1312--1574
134
1.9
141
83
7
353
42
0
4
52
1.26
1472--1535
23
2.9
22
90
9
103
40
0
0
59
0.97
1494--1574
36
2.3
35
82
6
101
40
1
2
55
1.21
1571--1634
4
15.5
4
81
15
60
20
3
0
76
0.92
1616--1668
3
17.7
3
85
14
74
28
1
0
69
0.99
2793--2906
5
21.8
5
68
16
54
21
2
4
71
1.15
2916--2942
14
1.9
14
100
0
54
11
14
0
74
1.08
6876--7168
95
3.1
95
91
0
462
34
17
18
29
1.94
8237--8673
84
5.3
84
87
3
566
34
24
18
23
1.96
8237--8673
167
2.6
167
86
3
582
34
24
18
23
1.96
16287--16428
64
2.2
64
87
0
194
40
18
9
30
1.83
18126--18164
14
2.7
15
84
8
53
61
0
2
35
1.10
28867--28920
20
2.6
21
77
16
58
66
1
1
29
1.12
29430--29482
24
2.1
26
89
6
83
49
9
9
32
1.67
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30152--30242
47
1.9
47
95
0
164
52
12
8
26
1.67
32470--32505
10
3.5
11
88
11
58
19
5
0
75
1.00
32468--32505
21
1.9
20
89
10
60
21
5
0
73
1.02
39472--39540
29
2.4
29
97
0
129
46
13
7
33
1.70
40031--40107
35
2.2
35
100
0
154
50
2
27
19
1.60
42052--42582
139
3.8
140
87
1
672
27
19
16
36
1.94
43433--43561
42
3.1
40
76
7
116
29
23
21
25
1.99
43653--43811
55
2.9
55
88
3
239
41
11
11
34
1.79
45087--45197
28
3.9
28
91
2
177
26
4
27
41
1.75
45844--45945
10
10.3
10
74
13
77
4
11
0
82
0.87
45854--45905
18
2.8
18
91
2
77
1
15
0
82
0.75
45846--45928
9
9.1
8
75
21
58
3
12
1
83
0.84
63474--63561
44
2.0
44
97
0
167
35
15
21
27
1.94

Tables:   1

The End!