Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004122.1 Hibiscus syriacus cultivar Beakdansim tig00009020_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41299

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8376--8424
24
2.0
24
96
0
89
42
14
12
30
1.82
8962--9022
31
2.0
31
84
15
83
37
21
9
31
1.86
13624--13659
7
4.9
7
87
12
54
13
27
30
27
1.94
13624--13659
16
2.4
14
90
9
54
13
27
30
27
1.94
18140--18195
3
18.0
3
89
7
85
35
0
0
64
0.94
18912--18940
13
2.2
13
100
0
58
0
31
62
6
1.22
19657--19829
96
1.8
93
81
3
211
39
10
11
38
1.76
21976--22026
14
3.6
14
84
5
57
23
15
9
50
1.73
21988--22026
15
2.7
15
88
4
53
20
15
12
51
1.76
24982--25011
2
15.0
2
100
0
60
50
0
0
50
1.00
25299--25342
22
2.0
22
95
0
79
65
13
15
4
1.41
25336--25425
7
12.0
7
74
17
74
81
1
16
1
0.82
25334--25388
17
3.4
17
82
17
80
78
0
21
0
0.76
25336--25426
24
4.0
22
80
9
103
81
1
16
1
0.81
25336--25412
32
2.4
33
87
6
106
80
1
16
1
0.85
25327--25426
39
2.6
39
76
9
98
80
2
17
1
0.87
28955--29203
75
3.3
75
84
5
313
31
15
22
30
1.95
30489--30543
22
2.5
22
90
0
92
34
12
14
38
1.84
30979--31082
40
2.6
40
92
0
172
50
7
24
18
1.73
31241--31339
40
2.5
40
85
3
137
49
8
22
20
1.74
31276--31686
111
3.7
111
83
7
548
39
13
19
27
1.89
31286--31686
221
1.8
223
93
1
707
38
13
19
27
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31648--31840
84
2.3
83
86
2
260
38
16
15
30
1.89
32088--32155
3
22.0
3
88
5
100
36
0
0
63
0.95
32153--32255
51
2.0
51
100
0
206
43
23
7
25
1.80

Tables:   1

The End!