Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01004123.1 Hibiscus syriacus cultivar Beakdansim tig00009023_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1596068
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 4 of 9
Found at i:624848 original size:21 final size:21
Alignment explanation
Indices: 624824--624871 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
624814 CCTGTGGAGA
*
624824 TGGCATATAAACTGGTGGGCT
1 TGGCATATAAACTGGAGGGCT
* *
624845 TGGCATATGAAGTGGAGGGCT
1 TGGCATATAAACTGGAGGGCT
*
624866 GGGCAT
1 TGGCAT
624872 GTACCCCTGC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.23, C:0.12, G:0.40, T:0.25
Consensus pattern (21 bp):
TGGCATATAAACTGGAGGGCT
Found at i:626618 original size:34 final size:31
Alignment explanation
Indices: 626575--626663 Score: 106
Period size: 34 Copynumber: 2.7 Consensus size: 31
626565 TTAATAATTC
*
626575 TAAATAAATAATAATTATATAAATATTATTTTAA
1 TAAAAAAATAATAATTATATAAATA-TA--TTAA
* *
626609 TAAAAAAATAATATTTACATAAATATATTAA
1 TAAAAAAATAATAATTATATAAATATATTAA
*
626640 TATAAAAAATAATAATTATTTAAA
1 TA-AAAAAATAATAATTATATAAA
626664 AAATACTAAC
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
31 6 0.12
32 18 0.38
33 2 0.04
34 22 0.46
ACGTcount: A:0.60, C:0.01, G:0.00, T:0.39
Consensus pattern (31 bp):
TAAAAAAATAATAATTATATAAATATATTAA
Found at i:626620 original size:31 final size:33
Alignment explanation
Indices: 626578--626652 Score: 84
Period size: 31 Copynumber: 2.4 Consensus size: 33
626568 ATAATTCTAA
* * *
626578 ATAAATAATAATTATATAAAT-ATTATTTTAAT
1 ATAAAAAATAATTATATAAATAAATATATTAAT
* *
626610 A-AAAAAATAA-TATTTACATAAATATATTAAT
1 ATAAAAAATAATTATATAAATAAATATATTAAT
626641 ATAAAAAATAAT
1 ATAAAAAATAAT
626653 AATTATTTAA
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
30 7 0.20
31 18 0.51
32 10 0.29
ACGTcount: A:0.60, C:0.01, G:0.00, T:0.39
Consensus pattern (33 bp):
ATAAAAAATAATTATATAAATAAATATATTAAT
Found at i:626680 original size:32 final size:34
Alignment explanation
Indices: 626608--626683 Score: 88
Period size: 33 Copynumber: 2.3 Consensus size: 34
626598 TATTATTTTA
* *
626608 ATAAAAA-AATAATATTTACATAAATATATTAAT
1 ATAAAAATAATAATATTTACATAAATATACTAAC
626641 ATAAAAAATAATAATTATTTA-A-AAA-ATACTAAC
1 AT-AAAAATAATAA-TATTTACATAAATATACTAAC
626674 ATAAAAATAA
1 ATAAAAATAA
626684 ATTTCTTACC
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
32 8 0.21
33 10 0.26
34 8 0.21
35 6 0.16
36 6 0.16
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.32
Consensus pattern (34 bp):
ATAAAAATAATAATATTTACATAAATATACTAAC
Found at i:627848 original size:2 final size:2
Alignment explanation
Indices: 627841--627876 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
627831 TTGTTGTACA
627841 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
627877 CATCCCTTCA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:628045 original size:80 final size:80
Alignment explanation
Indices: 627908--628069 Score: 211
Period size: 80 Copynumber: 2.0 Consensus size: 80
627898 ATTAAAATTT
** *
627908 CTTTATTCTCTTACTCAACAATGTTTAACGTTCGACTAACTGGCATAATTGATACCTTTCTGCCA
1 CTTTATTCTCTTACTCAACAATACTTAACGTTCGACTAACTGGCATAATTGACACCTTTCTGCCA
627973 -ATGCACAATTAGGC
66 TATGCACAATTAGGC
* ** * *
627987 CTTTATTCTTTTACTCAACGGTACTTAATCGTTC-ATCTAATTGGCATAATTGACACCTTTCTGT
1 CTTTATTCTCTTACTCAACAATACTTAA-CGTTCGA-CTAACTGGCATAATTGACACCTTTCTGC
*
628051 CATATGCACAGTTAGGC
64 CATATGCACAATTAGGC
628068 CT
1 CT
628070 CAAAGACACT
Statistics
Matches: 71, Mismatches: 9, Indels: 4
0.85 0.11 0.05
Matches are distributed among these distances:
79 24 0.34
80 32 0.45
81 15 0.21
ACGTcount: A:0.26, C:0.23, G:0.13, T:0.38
Consensus pattern (80 bp):
CTTTATTCTCTTACTCAACAATACTTAACGTTCGACTAACTGGCATAATTGACACCTTTCTGCCA
TATGCACAATTAGGC
Found at i:628120 original size:68 final size:68
Alignment explanation
Indices: 628009--628334 Score: 445
Period size: 68 Copynumber: 4.9 Consensus size: 68
627999 ACTCAACGGT
* * * * *
628009 ACTTAATCGTTCATCTAATTGGCATAATTGACACCTTTCTGTCATATGCACAGTTAGGCCTCAAA
1 ACTTAGTCTTTCATCTAACTGACATAAATGACACCTTTCTGTCATATGCACAGTTAGGCCTCAAA
628074 GAC
66 GAC
* * *
628077 ACTTAGTCTTTCATCAAACTGGA-ATAAATGACACATTTATGTCATATGCACAGTTAGGCCTCAA
1 ACTTAGTCTTTCATCTAACT-GACATAAATGACACCTTTCTGTCATATGCACAGTTAGGCCTCAA
628141 AGAC
65 AGAC
* *
628145 ACTTAGTCTTTCATCTAATTGACATAAATGACACCTTTCTGTCATATGCACA---A----T-TAA
1 ACTTAGTCTTTCATCTAACTGACATAAATGACACCTTTCTGTCATATGCACAGTTAGGCCTCAAA
628202 GAC
66 GAC
* *
628205 ACTTAGTCTTTCATCTAACTGACATAAATGACACATTTCTATCATATGCACAGTTAGGCCTCAAA
1 ACTTAGTCTTTCATCTAACTGACATAAATGACACCTTTCTGTCATATGCACAGTTAGGCCTCAAA
628270 GAC
66 GAC
* * *
628273 ACTTTGTCTTTCATCTAACTGACATAAATGTCACCTTTCTGTCATATGCACAGTCAGGCCTC
1 ACTTAGTCTTTCATCTAACTGACATAAATGACACCTTTCTGTCATATGCACAGTTAGGCCTC
628335 TTGATCTTTT
Statistics
Matches: 226, Mismatches: 22, Indels: 20
0.84 0.08 0.07
Matches are distributed among these distances:
60 54 0.24
61 1 0.00
63 1 0.00
65 1 0.00
67 3 0.01
68 165 0.73
69 1 0.00
ACGTcount: A:0.31, C:0.23, G:0.13, T:0.33
Consensus pattern (68 bp):
ACTTAGTCTTTCATCTAACTGACATAAATGACACCTTTCTGTCATATGCACAGTTAGGCCTCAAA
GAC
Found at i:628256 original size:128 final size:131
Alignment explanation
Indices: 628009--628324 Score: 451
Period size: 128 Copynumber: 2.4 Consensus size: 131
627999 ACTCAACGGT
* * * *
628009 ACTTAATCGTTCATCTAATTGGCATAATTGACACCTTTCTGTCATATGCACAGTTAGGCCTCAAA
1 ACTTAGTCTTTCATCTAATTGACATAAATGACACCTTTCTGTCATATGCACA--TA---CTCAAA
*
628074 GACACTTAGTCTTTCATCAAACTGGAATAAATGACACATTTATGTCATATGCACAGTTAGGCCTC
61 GACACTTAGTCTTTCATCAAACTGGAATAAATGACACATTTATATCATATGCACAGTTAGGCCTC
628139 AAAGAC
126 AAAGAC
*
628145 ACTTAGTCTTTCATCTAATTGACATAAATGACACCTTTCTGTCATATGCACA-A-T-TAAGACAC
1 ACTTAGTCTTTCATCTAATTGACATAAATGACACCTTTCTGTCATATGCACATACTCAAAGACAC
* *
628207 TTAGTCTTTCATCTAACT-GACATAAATGACACATTTCTATCATATGCACAGTTAGGCCTCAAAG
66 TTAGTCTTTCATCAAACTGGA-ATAAATGACACATTTATATCATATGCACAGTTAGGCCTCAAAG
628271 AC
130 AC
* * *
628273 ACTTTGTCTTTCATCTAACTGACATAAATGTCACCTTTCTGTCATATGCACA
1 ACTTAGTCTTTCATCTAATTGACATAAATGACACCTTTCTGTCATATGCACA
628325 GTCAGGCCTC
Statistics
Matches: 168, Mismatches: 11, Indels: 10
0.89 0.06 0.05
Matches are distributed among these distances:
127 2 0.01
128 116 0.69
129 1 0.01
133 1 0.01
136 48 0.29
ACGTcount: A:0.32, C:0.23, G:0.12, T:0.33
Consensus pattern (131 bp):
ACTTAGTCTTTCATCTAATTGACATAAATGACACCTTTCTGTCATATGCACATACTCAAAGACAC
TTAGTCTTTCATCAAACTGGAATAAATGACACATTTATATCATATGCACAGTTAGGCCTCAAAGA
C
Found at i:628841 original size:59 final size:58
Alignment explanation
Indices: 628710--628876 Score: 194
Period size: 59 Copynumber: 2.9 Consensus size: 58
628700 TCTCATACGA
* * *
628710 AAATTCATACACTTAGTATGAATTTC-TATTCCTTTAGTACAC-AAGATGCCCAATACAT
1 AAATTCATACACTTAGTATGAATTTCTTA-TCATTTAGCACACGAAG-TGCCCAATACAG
* * **
628768 AAATTCATACACTTAGCATGAATTTCTTATCATGTTAGCACACGAAGTGCCCTATATGG
1 AAATTCATACACTTAGTATGAATTTCTTATCAT-TTAGCACACGAAGTGCCCAATACAG
* * * *
628827 AAATTCGTACACTTAGTATGAATTTCTTAACATTTTGCACACGAAATGCC
1 AAATTCATACACTTAGTATGAATTTCTTATCATTTAGCACACGAAGTGCC
628877 ATTTGGTAAT
Statistics
Matches: 94, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
58 43 0.46
59 48 0.51
60 3 0.03
ACGTcount: A:0.34, C:0.20, G:0.12, T:0.34
Consensus pattern (58 bp):
AAATTCATACACTTAGTATGAATTTCTTATCATTTAGCACACGAAGTGCCCAATACAG
Found at i:629287 original size:20 final size:20
Alignment explanation
Indices: 629262--629324 Score: 63
Period size: 22 Copynumber: 3.0 Consensus size: 20
629252 TGATGTTGCC
629262 TGGTATCGATACCCTTACCA
1 TGGTATCGATACCCTTACCA
* * *
629282 TGGTATTGATACTACCCTACTA
1 TGGTATCGATAC--CCTTACCA
*
629304 GGGTATCGATACCCCTTACCA
1 TGGTATCGATA-CCCTTACCA
629325 GTATTGATAC
Statistics
Matches: 33, Mismatches: 7, Indels: 5
0.73 0.16 0.11
Matches are distributed among these distances:
20 11 0.33
21 6 0.18
22 15 0.45
23 1 0.03
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.30
Consensus pattern (20 bp):
TGGTATCGATACCCTTACCA
Found at i:629334 original size:95 final size:95
Alignment explanation
Indices: 629221--629393 Score: 258
Period size: 95 Copynumber: 1.8 Consensus size: 95
629211 GTACCAATAC
* * *
629221 CCCCTTCGAGTATCGATACCAAAAATAGGTTTGATGTTGCCTGGTATCGATA-CCCTTACCATGG
1 CCCCTTCCAGTATCGATACCAAAAATAGATTCGATGTTGCCTGGTATCGATACCCCTTACCATGG
*
629285 TATTGATACTACCCTACTAGGGTATCGATA
66 TATCGATACTACCCTACTAGGGTATCGATA
* * * *
629315 CCCCTTACCAGTATTGATACCAAAATTAGATTCGATGTTTCTTGGTATCGATACCCCTTACCATG
1 CCCCTT-CCAGTATCGATACCAAAAATAGATTCGATGTTGCCTGGTATCGATACCCCTTACCATG
629380 GTATCGATACTACC
65 GTATCGATACTACC
629394 TCATCGGTAT
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
94 6 0.09
95 39 0.57
96 24 0.35
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.32
Consensus pattern (95 bp):
CCCCTTCCAGTATCGATACCAAAAATAGATTCGATGTTGCCTGGTATCGATACCCCTTACCATGG
TATCGATACTACCCTACTAGGGTATCGATA
Found at i:634170 original size:17 final size:17
Alignment explanation
Indices: 634145--634260 Score: 50
Period size: 17 Copynumber: 6.9 Consensus size: 17
634135 AATTTAACCC
634145 TTATATTATTATT-TTTA
1 TTATATTA-TATTATTTA
*
634162 TTATTTTATATTATTTA
1 TTATATTATATTATTTA
* *
634179 TTTTATTGTATATACATTTA
1 TTATA-T-TATAT-TATTTA
*
634199 -TATA-TATA-TATATA
1 TTATATTATATTATTTA
*
634213 -TATATATATATATGTTTA
1 TTATAT-TATAT-TATTTA
*
634231 -TATATATATTTTATTTA
1 TTATAT-TATATTATTTA
*
634248 -TATACT-TATTATT
1 TTATATTATATTATT
634261 AATATTTGTA
Statistics
Matches: 78, Mismatches: 13, Indels: 18
0.72 0.12 0.17
Matches are distributed among these distances:
14 8 0.10
15 6 0.08
16 13 0.17
17 23 0.29
18 15 0.19
19 8 0.10
20 5 0.06
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (17 bp):
TTATATTATATTATTTA
Found at i:634173 original size:19 final size:19
Alignment explanation
Indices: 634151--634191 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
634141 ACCCTTATAT
*
634151 TATTATTT-TTATTATTTTA
1 TATTATTTATT-TTATTGTA
634170 TATTATTTATTTTATTGTA
1 TATTATTTATTTTATTGTA
634189 TAT
1 TAT
634192 ACATTTATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 18 0.90
20 2 0.10
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71
Consensus pattern (19 bp):
TATTATTTATTTTATTGTA
Found at i:634251 original size:2 final size:2
Alignment explanation
Indices: 634187--634239 Score: 70
Period size: 2 Copynumber: 26.5 Consensus size: 2
634177 TATTTTATTG
* * * *
634187 TA TA TA CA TT TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG TT
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
634229 TA TA TA TA TA T
1 TA TA TA TA TA T
634240 TTTATTTATA
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.53
Consensus pattern (2 bp):
TA
Found at i:634256 original size:12 final size:11
Alignment explanation
Indices: 634145--634257 Score: 67
Period size: 12 Copynumber: 10.1 Consensus size: 11
634135 AATTTAACCC
634145 TTATATTATTAT
1 TTATA-TATTAT
634157 TT-T-TATTAT
1 TTATATATTAT
634166 TT-TATATTAT
1 TTATATATTAT
634176 TTAT-T-TTAT
1 TTATATATTAT
*
634185 TGTATATA-CAT
1 T-TATATATTAT
634196 TTATATATATAT
1 TTATATAT-TAT
*
634208 ATATATATATAT
1 TTATATAT-TAT
* *
634220 ATATATGTTTAT
1 TTATAT-ATTAT
*
634232 ATATATATTTTAT
1 -T-TATATATTAT
634245 TTATATACTTAT
1 TTATATA-TTAT
634257 T
1 T
634258 ATTAATATTT
Statistics
Matches: 84, Mismatches: 6, Indels: 22
0.75 0.05 0.20
Matches are distributed among these distances:
9 14 0.17
10 18 0.21
11 11 0.13
12 30 0.36
13 6 0.07
14 5 0.06
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.62
Consensus pattern (11 bp):
TTATATATTAT
Found at i:634259 original size:15 final size:13
Alignment explanation
Indices: 634146--634265 Score: 69
Period size: 14 Copynumber: 8.2 Consensus size: 13
634136 ATTTAACCCT
*
634146 TATATTATTATTTT
1 TATATT-TTATTTA
634160 TATTATTTTATATTA
1 TA-TATTTTAT-TTA
*
634175 TTTATTTTATTGTA
1 TATATTTTATT-TA
634189 TATACATTTATATATATA
1 TAT--ATTT-TAT-T-TA
* *
634207 TATATATATATATA
1 TATAT-TTTATTTA
*
634221 TATATGTTTATATA
1 TATAT-TTTATTTA
634235 TATATTTTATTTA
1 TATATTTTATTTA
*
634248 TATACTTATTATTAA
1 TATA-TT-TTATTTA
634263 TAT
1 TAT
634266 TTGTATAGTT
Statistics
Matches: 86, Mismatches: 10, Indels: 19
0.75 0.09 0.17
Matches are distributed among these distances:
13 12 0.14
14 39 0.45
15 16 0.19
16 9 0.10
17 4 0.05
18 6 0.07
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.61
Consensus pattern (13 bp):
TATATTTTATTTA
Found at i:634328 original size:2 final size:2
Alignment explanation
Indices: 634321--634365 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
634311 TACCATATCC
634321 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
634363 TA T
1 TA T
634366 GTTTTCTATT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:637937 original size:19 final size:20
Alignment explanation
Indices: 637913--637954 Score: 61
Period size: 19 Copynumber: 2.1 Consensus size: 20
637903 ATACTTTGCA
637913 TTTTATA-TTT-CATGTTTAT
1 TTTTATATTTTCCATGTTT-T
637932 TTTTATATTTTCCATGTTTT
1 TTTTATATTTTCCATGTTTT
637952 TTT
1 TTT
637955 ACATTCGTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 7 0.33
20 7 0.33
21 7 0.33
ACGTcount: A:0.17, C:0.07, G:0.05, T:0.71
Consensus pattern (20 bp):
TTTTATATTTTCCATGTTTT
Found at i:645483 original size:18 final size:18
Alignment explanation
Indices: 645460--645521 Score: 74
Period size: 18 Copynumber: 3.4 Consensus size: 18
645450 TAAGTCGAAG
645460 AAGAAAAAAAGAACAAAA
1 AAGAAAAAAAGAACAAAA
645478 AAG-AAAAAAGAACAAAAA
1 AAGAAAAAAAGAAC-AAAA
645496 AAGAGAAAAAAGGAA-AAAA
1 AAGA-AAAAAA-GAACAAAA
*
645515 AACAAAA
1 AAGAAAA
645522 TGAGAAAGAG
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
17 10 0.26
18 13 0.33
19 7 0.18
20 6 0.15
21 3 0.08
ACGTcount: A:0.82, C:0.05, G:0.13, T:0.00
Consensus pattern (18 bp):
AAGAAAAAAAGAACAAAA
Found at i:645486 original size:17 final size:17
Alignment explanation
Indices: 645464--645496 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
645454 TCGAAGAAGA
645464 AAAAAAGAACAAAAAAG
1 AAAAAAGAACAAAAAAG
645481 AAAAAAGAACAAAAAA
1 AAAAAAGAACAAAAAA
645497 AGAGAAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.85, C:0.06, G:0.09, T:0.00
Consensus pattern (17 bp):
AAAAAAGAACAAAAAAG
Found at i:645488 original size:28 final size:28
Alignment explanation
Indices: 645457--645521 Score: 89
Period size: 28 Copynumber: 2.4 Consensus size: 28
645447 TCCTAAGTCG
*
645457 AAGAAGAAAAAAAGA-ACAAAAAAGAAAA
1 AAGAACAAAAAAAGAGA-AAAAAAGAAAA
*
645485 AAGAACAAAAAAAGAGAAAAAAGGAAAA
1 AAGAACAAAAAAAGAGAAAAAAAGAAAA
645513 AA-AACAAAA
1 AAGAACAAAA
645522 TGAGAAAGAG
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
27 7 0.21
28 26 0.76
29 1 0.03
ACGTcount: A:0.82, C:0.05, G:0.14, T:0.00
Consensus pattern (28 bp):
AAGAACAAAAAAAGAGAAAAAAAGAAAA
Found at i:648954 original size:19 final size:19
Alignment explanation
Indices: 648932--648972 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
648922 ACTCTTATAT
*
648932 TATTATTT-TTATTATTTTA
1 TATTATTTATT-TTATTGTA
648951 TATTATTTATTTTATTGTA
1 TATTATTTATTTTATTGTA
648970 TAT
1 TAT
648973 ACATATATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 18 0.90
20 2 0.10
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71
Consensus pattern (19 bp):
TATTATTTATTTTATTGTA
Found at i:648997 original size:12 final size:11
Alignment explanation
Indices: 648935--649013 Score: 51
Period size: 12 Copynumber: 7.3 Consensus size: 11
648925 CTTATATTAT
648935 TATTTT-TAT-
1 TATTTTATATA
648944 TATTTTATAT-
1 TATTTTATATA
*
648954 TA-TTTAT-TT
1 TATTTTATATA
*
648963 TATTGTATATACA
1 TATT-T-TATATA
*
648976 TATATATATATA
1 TAT-TTTATATA
648988 TATGTTTATATA
1 TAT-TTTATATA
*
649000 TATTTTATTTA
1 TATTTTATATA
649011 TAT
1 TAT
649014 AATTATTATT
Statistics
Matches: 56, Mismatches: 7, Indels: 12
0.75 0.09 0.16
Matches are distributed among these distances:
8 1 0.02
9 13 0.23
10 6 0.11
11 11 0.20
12 21 0.38
13 3 0.05
14 1 0.02
ACGTcount: A:0.33, C:0.01, G:0.03, T:0.63
Consensus pattern (11 bp):
TATTTTATATA
Found at i:649211 original size:51 final size:53
Alignment explanation
Indices: 649122--649221 Score: 134
Period size: 51 Copynumber: 1.9 Consensus size: 53
649112 TTTTTCTATT
* * *
649122 TTTATTATTATTATTATATCATACTAGTTTTATTTTTTTTATTATTCTTTTGCC
1 TTTATTATTATTATTATATCATACTAG-TATATATTTTTTATTACTCTTTTGCC
649176 TTTATTATTATTATATATAT-ATA-TA-TATATATTTTTTATTACTCTT
1 TTTATTATTATTAT-TATATCATACTAGTATATATTTTTTATTACTCTT
649222 ATTACATGTT
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
51 18 0.43
53 2 0.05
54 17 0.40
55 5 0.12
ACGTcount: A:0.27, C:0.07, G:0.02, T:0.64
Consensus pattern (53 bp):
TTTATTATTATTATTATATCATACTAGTATATATTTTTTATTACTCTTTTGCC
Found at i:649462 original size:15 final size:14
Alignment explanation
Indices: 649428--649465 Score: 58
Period size: 14 Copynumber: 2.6 Consensus size: 14
649418 TTATTGCAAT
649428 TATTTTTATTTTAC
1 TATTTTTATTTTAC
*
649442 TTTTTTTATTTTAC
1 TATTTTTATTTTAC
649456 TCATTTTTAT
1 T-ATTTTTAT
649466 CTAACACATC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 14 0.67
15 7 0.33
ACGTcount: A:0.18, C:0.08, G:0.00, T:0.74
Consensus pattern (14 bp):
TATTTTTATTTTAC
Found at i:651736 original size:17 final size:18
Alignment explanation
Indices: 651699--651733 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
651689 AAGATTTTGG
651699 ATTTTTGTAGTTTTATAA
1 ATTTTTGTAGTTTTATAA
651717 ATTTTTGT-GTTTT-TAA
1 ATTTTTGTAGTTTTATAA
651733 A
1 A
651734 ATTAAATTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.24
17 5 0.29
18 8 0.47
ACGTcount: A:0.26, C:0.00, G:0.11, T:0.63
Consensus pattern (18 bp):
ATTTTTGTAGTTTTATAA
Found at i:652731 original size:5 final size:5
Alignment explanation
Indices: 652721--653379 Score: 1283
Period size: 5 Copynumber: 132.8 Consensus size: 5
652711 AGGATCACTT
652721 CAATA CAATA CAATA CAATA CAATA CAATA CAATA CAATA CAATA CAATA
1 CAATA CAATA CAATA CAATA CAATA CAATA CAATA CAATA CAATA CAATA
652771 CAATA CAATA CAATA CAATA CAATA CAATA CAATA CAATA CAATA CAATA
1 CAATA CAATA CAATA CAATA CAATA CAATA CAATA CAATA CAATA CAATA
652821 CAATA CAATA CAATA CAATA CAATA CAATA CAATA CAATA CAATA CAATA
1 CAATA CAATA CAATA CAATA CAATA CAATA CAATA CAATA CAATA CAATA
652871 CAATA CAATA CAATA CAATA CAATA C-A-A CAATA CAATA CAATA CAATA
1 CAATA CAATA CAATA CAATA CAATA CAATA CAATA CAATA CAATA CAATA
652919 CAATA CAATA CAATA CAATA CAATA CAATA CAATA CAATA CAATA CAATA
1 CAATA CAATA CAATA CAATA CAATA CAATA CAATA CAATA CAATA CAATA
652969 CAATA CAATA CAATA CAATA CAATA CAATA CAATA CAATA CAATA CAATA
1 CAATA CAATA CAATA CAATA CAATA CAATA CAATA CAATA CAATA CAATA
653019 CAATA CAATA CAATA CAATA CAATA CAATA CAATA CAATA CAATA CAATA
1 CAATA CAATA CAATA CAATA CAATA CAATA CAATA CAATA CAATA CAATA
653069 CAATA CAATA CAATA CAATA CAATA CAATA CAATA CAATA CAATA CAATA
1 CAATA CAATA CAATA CAATA CAATA CAATA CAATA CAATA CAATA CAATA
653119 CAATA CAATA CAATA CAATA CAATA C-ATA CAATA CAATA CAATA CAATA
1 CAATA CAATA CAATA CAATA CAATA CAATA CAATA CAATA CAATA CAATA
653168 CAATA CAATA CAATA CAATA CAATA CAATA CAATA C-A-A CAATA CAATA
1 CAATA CAATA CAATA CAATA CAATA CAATA CAATA CAATA CAATA CAATA
653216 CAATA CAATA CAATA CAATA CAATA CAATA CAATA CAATA CAATA CAATA
1 CAATA CAATA CAATA CAATA CAATA CAATA CAATA CAATA CAATA CAATA
653266 CAATA CAATA CAATA CAATA CAATA CAATA CAATA CAATA CAATA CAATA
1 CAATA CAATA CAATA CAATA CAATA CAATA CAATA CAATA CAATA CAATA
653316 CAATA CAATA CAATA CAATA CAATA CAATA CAATA CAATA CAATA CAATA
1 CAATA CAATA CAATA CAATA CAATA CAATA CAATA CAATA CAATA CAATA
653366 CAATA CAATA CAAT
1 CAATA CAATA CAAT
653380 TGTAGACACC
Statistics
Matches: 649, Mismatches: 0, Indels: 10
0.98 0.00 0.02
Matches are distributed among these distances:
3 4 0.01
4 8 0.01
5 637 0.98
ACGTcount: A:0.60, C:0.20, G:0.00, T:0.20
Consensus pattern (5 bp):
CAATA
Found at i:656278 original size:23 final size:23
Alignment explanation
Indices: 656244--656312 Score: 102
Period size: 23 Copynumber: 3.0 Consensus size: 23
656234 CACCACAGCT
*
656244 CGTATAAATGCACCGAAGTGCCA
1 CGTAGAAATGCACCGAAGTGCCA
* * *
656267 CGTAGAATTGCACCGTAGTGCCG
1 CGTAGAAATGCACCGAAGTGCCA
656290 CGTAGAAATGCACCGAAGTGCCA
1 CGTAGAAATGCACCGAAGTGCCA
656313 TATAATAATG
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 39 1.00
ACGTcount: A:0.30, C:0.26, G:0.26, T:0.17
Consensus pattern (23 bp):
CGTAGAAATGCACCGAAGTGCCA
Found at i:662224 original size:36 final size:36
Alignment explanation
Indices: 662168--662456 Score: 301
Period size: 36 Copynumber: 8.1 Consensus size: 36
662158 AATTTACTCA
662168 AAACAAAGTTTTGTCTCTCTTGAGACAGTTTCTCTTG
1 AAACAAA-TTTTGTCTCTCTTGAGACAGTTTCTCTTG
* * * *
662205 AAATAAATCTTATCTCTCTTGAGACAGTTTCCCTTG
1 AAACAAATTTTGTCTCTCTTGAGACAGTTTCTCTTG
*
662241 AAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTG
1 AAACAAATTTTGTCTCTCTTGAGACAGTTTCTCTTG
* *
662277 AAACAAA------ATCT-TTGA-ATATGTTT-TCTTTG
1 AAACAAATTTTGTCTCTCTTGAGACA-GTTTCTC-TTG
* * *
662306 AAACAAATTTCGTCTTTCTTGAGACAATTTCT-TTCG
1 AAACAAATTTTGTCTCTCTTGAGACAGTTTCTCTT-G
* * * *
662342 GAACTAAGTTTTGTCTCTCTTGAGACAATTTCTCTTT
1 AAAC-AAATTTTGTCTCTCTTGAGACAGTTTCTCTTG
* * *
662379 TAACAAATTTTATCTCTCTTGAGACAGTTTCCCTTG
1 AAACAAATTTTGTCTCTCTTGAGACAGTTTCTCTTG
662415 AAACAAAGTTTTGTCTCTCTTGAGACAGTTTCTCTTG
1 AAACAAA-TTTTGTCTCTCTTGAGACAGTTTCTCTTG
662452 AAACA
1 AAACA
662457 CAAAAAATAC
Statistics
Matches: 209, Mismatches: 28, Indels: 30
0.78 0.10 0.11
Matches are distributed among these distances:
28 3 0.01
29 18 0.09
30 3 0.01
35 4 0.02
36 110 0.53
37 69 0.33
38 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.13, T:0.41
Consensus pattern (36 bp):
AAACAAATTTTGTCTCTCTTGAGACAGTTTCTCTTG
Found at i:662246 original size:73 final size:72
Alignment explanation
Indices: 662168--662456 Score: 290
Period size: 73 Copynumber: 4.1 Consensus size: 72
662158 AATTTACTCA
* * *
662168 AAACAAAGTTTTGTCTCTCTTGAGACAGTTTCTCTTGAAATAAATCTTATCTCTCTTGAGACAGT
1 AAACAAA-TTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAATTTTATCTCTCTTGAGACAGT
662233 TTCCCTTG
65 TTCCCTTG
*
662241 AAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAA----A--TCT-TTGA-ATATGT
1 AAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAATTTTATCTCTCTTGAGACA-GT
* *
662298 TTTCTTTG
65 TTCCCTTG
* * * * * * * *
662306 AAACAAATTTCGTCTTTCTTGAGACAATTT-CTTTCGGAACTAAGTTTTGTCTCTCTTGAGACAA
1 AAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTT-GAAAC-AAATTTTATCTCTCTTGAGACAG
* *
662370 TTTCTCTTT
64 TTTCCCTTG
* * *
662379 TAACAAATTTTATCTCTCTTGAGACAGTTTCCCTTGAAACAAAGTTTTGTCTCTCTTGAGACAGT
1 AAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAA-TTTTATCTCTCTTGAGACAGT
*
662444 TTCTCTTG
65 TTCCCTTG
662452 AAACA
1 AAACA
662457 CAAAAAATAC
Statistics
Matches: 174, Mismatches: 29, Indels: 26
0.76 0.13 0.11
Matches are distributed among these distances:
64 5 0.03
65 43 0.25
66 5 0.03
68 1 0.01
72 39 0.22
73 76 0.44
74 5 0.03
ACGTcount: A:0.27, C:0.19, G:0.13, T:0.41
Consensus pattern (72 bp):
AAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAATTTTATCTCTCTTGAGACAGTT
TCCCTTG
Found at i:662395 original size:138 final size:138
Alignment explanation
Indices: 662168--662421 Score: 368
Period size: 138 Copynumber: 1.8 Consensus size: 138
662158 AATTTACTCA
* * *
662168 AAACAAAGTTTTGTCTCTCTTGAGACAGTTTCTCTTGAAATAAATCTTATCTCTCTTGAGACAGT
1 AAACAAAGTTTCGTCTCTCTTGAGACAATTTCTCTTGAAATAAATCTTATCTCTCTTGAGACAAT
*
662233 TTCCCTTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATCTTTGAATATGT
66 TTCCCTTGAAACAAATTTTATCTCTCTTGAGACAGTTTCCCTTGAAACAAAATCTTTGAATATGT
662298 TTTCTTTG
131 TTTCTTTG
* * * * *
662306 AAACAAA-TTTCGTCTTTCTTGAGACAATTTCT-TTCGGAACTAAGTTTTGTCTCTCTTGAGACA
1 AAACAAAGTTTCGTCTCTCTTGAGACAATTTCTCTT--GAAATAAATCTTATCTCTCTTGAGACA
* **
662369 ATTTCTCTTTTAACAAATTTTATCTCTCTTGAGACAGTTTCCCTTGAAACAAA
64 ATTTCCCTTGAAACAAATTTTATCTCTCTTGAGACAGTTTCCCTTGAAACAAA
662422 GTTTTGTCTC
Statistics
Matches: 102, Mismatches: 12, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
136 2 0.02
137 22 0.22
138 78 0.76
ACGTcount: A:0.28, C:0.19, G:0.12, T:0.41
Consensus pattern (138 bp):
AAACAAAGTTTCGTCTCTCTTGAGACAATTTCTCTTGAAATAAATCTTATCTCTCTTGAGACAAT
TTCCCTTGAAACAAATTTTATCTCTCTTGAGACAGTTTCCCTTGAAACAAAATCTTTGAATATGT
TTTCTTTG
Found at i:662432 original size:37 final size:36
Alignment explanation
Indices: 662303--662456 Score: 166
Period size: 37 Copynumber: 4.2 Consensus size: 36
662293 TATGTTTTCT
* * *
662303 TTGAAACAAATTTCGTCTTTCTTGAGACAATTT-CT
1 TTGAAACAAATTTTGTCTCTCTTGAGACAATTTCCC
* * *
662338 TTCGGAACTAAGTTTTGTCTCTCTTGAGACAATTTCTC
1 TT-GAAAC-AAATTTTGTCTCTCTTGAGACAATTTCCC
** * *
662376 TTTTAACAAATTTTATCTCTCTTGAGACAGTTTCCC
1 TTGAAACAAATTTTGTCTCTCTTGAGACAATTTCCC
* *
662412 TTGAAACAAAGTTTTGTCTCTCTTGAGACAGTTTCTC
1 TTGAAACAAA-TTTTGTCTCTCTTGAGACAATTTCCC
662449 TTGAAACA
1 TTGAAACA
662457 CAAAAAATAC
Statistics
Matches: 99, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
35 2 0.02
36 37 0.37
37 58 0.59
38 2 0.02
ACGTcount: A:0.26, C:0.19, G:0.13, T:0.42
Consensus pattern (36 bp):
TTGAAACAAATTTTGTCTCTCTTGAGACAATTTCCC
Found at i:664464 original size:5 final size:5
Alignment explanation
Indices: 664454--664615 Score: 299
Period size: 5 Copynumber: 32.2 Consensus size: 5
664444 GGTTCCGACA
664454 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
664504 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT AT-AT ATAATAT ATAAT ATAAT
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT AT-A-AT ATAAT ATAAT
664555 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
664605 ATAAT ATAAT A
1 ATAAT ATAAT A
664616 AAGTAAGAGA
Statistics
Matches: 154, Mismatches: 0, Indels: 6
0.96 0.00 0.04
Matches are distributed among these distances:
4 4 0.03
5 145 0.94
6 1 0.01
7 4 0.03
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
ATAAT
Found at i:665266 original size:5 final size:5
Alignment explanation
Indices: 665232--665311 Score: 92
Period size: 5 Copynumber: 16.0 Consensus size: 5
665222 ACAAAATAAT
* * * *
665232 AAATA AATATT AAATA AATTA AAGAAA AAATA AAATA AAATA AAAT- -AAGA
1 AAATA AA-ATA AAATA AAATA AA-ATA AAATA AAATA AAATA AAATA AAATA
665282 AAATA AAATA AAATA AAATA AAATA AAATA
1 AAATA AAATA AAATA AAATA AAATA AAATA
665312 TTAAATAACT
Statistics
Matches: 63, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
3 2 0.03
5 54 0.86
6 7 0.11
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.21
Consensus pattern (5 bp):
AAATA
Found at i:665284 original size:23 final size:23
Alignment explanation
Indices: 665258--665302 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
665248 AATTAAAGAA
665258 AAAATAAAATAAAATAAAATAAG
1 AAAATAAAATAAAATAAAATAAG
665281 AAAATAAAATAAAATAAAATAA
1 AAAATAAAATAAAATAAAATAA
665303 AATAAAATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.80, C:0.00, G:0.02, T:0.18
Consensus pattern (23 bp):
AAAATAAAATAAAATAAAATAAG
Found at i:665316 original size:28 final size:28
Alignment explanation
Indices: 665232--665307 Score: 102
Period size: 28 Copynumber: 2.8 Consensus size: 28
665222 ACAAAATAAT
* * *
665232 AAATAAATATTAAATAAATTAA-AGAA-A
1 AAATAAA-ATAAAATAAAATAAGAAAATA
665259 AAATAAAATAAAATAAAATAAGAAAATA
1 AAATAAAATAAAATAAAATAAGAAAATA
665287 AAATAAAATAAAATAAAATAA
1 AAATAAAATAAAATAAAATAA
665308 AATATTAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
26 12 0.27
27 10 0.23
28 22 0.50
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.21
Consensus pattern (28 bp):
AAATAAAATAAAATAAAATAAGAAAATA
Found at i:666211 original size:7 final size:7
Alignment explanation
Indices: 666199--666234 Score: 72
Period size: 7 Copynumber: 5.1 Consensus size: 7
666189 TAATATAATT
666199 GAGTGCA
1 GAGTGCA
666206 GAGTGCA
1 GAGTGCA
666213 GAGTGCA
1 GAGTGCA
666220 GAGTGCA
1 GAGTGCA
666227 GAGTGCA
1 GAGTGCA
666234 G
1 G
666235 GGAGAAAGTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.28, C:0.14, G:0.44, T:0.14
Consensus pattern (7 bp):
GAGTGCA
Found at i:666545 original size:11 final size:10
Alignment explanation
Indices: 666524--666577 Score: 56
Period size: 11 Copynumber: 5.0 Consensus size: 10
666514 TTGTTTCTTA
666524 TTTTATTTTTC
1 TTTT-TTTTTC
666535 TTTGTTTTTTC
1 TTT-TTTTTTC
666546 TTTTATTTTTTC
1 -TTT-TTTTTTC
666558 TTTTTTTTT-
1 TTTTTTTTTC
666567 TTTTTCTTTTC
1 TTTTT-TTTTC
666578 GTTCTGATTG
Statistics
Matches: 38, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
9 5 0.13
10 10 0.26
11 12 0.32
12 11 0.29
ACGTcount: A:0.04, C:0.09, G:0.02, T:0.85
Consensus pattern (10 bp):
TTTTTTTTTC
Found at i:666564 original size:22 final size:23
Alignment explanation
Indices: 666513--666576 Score: 78
Period size: 22 Copynumber: 2.9 Consensus size: 23
666503 TTCCTTTGTT
* *
666513 TTTGTTTCTTATTTTA-TTTTTC
1 TTTGTTTTTTCTTTTATTTTTTC
666535 TTTGTTTTTTCTTTTATTTTTTC
1 TTTGTTTTTTCTTTTATTTTTTC
* *
666558 TTT-TTTTTTTTTTTCTTTT
1 TTTGTTTTTTCTTTTATTTT
666577 CGTTCTGATT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
22 28 0.76
23 9 0.24
ACGTcount: A:0.05, C:0.08, G:0.03, T:0.84
Consensus pattern (23 bp):
TTTGTTTTTTCTTTTATTTTTTC
Found at i:666576 original size:12 final size:12
Alignment explanation
Indices: 666500--666568 Score: 68
Period size: 12 Copynumber: 5.5 Consensus size: 12
666490 TTTTCTTCAC
*
666500 TTTTTCCTTTGTT
1 TTTTTTCTTT-TT
666513 TTTGTTTCTTATTT
1 TTT-TTTCTT-TTT
*
666527 TATTTTTC-TTTG
1 T-TTTTTCTTTTT
*
666539 TTTTTTCTTTTA
1 TTTTTTCTTTTT
666551 TTTTTTCTTTTT
1 TTTTTTCTTTTT
666563 TTTTTT
1 TTTTTT
666569 TTTCTTTTCG
Statistics
Matches: 48, Mismatches: 4, Indels: 9
0.79 0.07 0.15
Matches are distributed among these distances:
11 6 0.12
12 23 0.48
13 4 0.08
14 12 0.25
15 3 0.06
ACGTcount: A:0.04, C:0.09, G:0.04, T:0.83
Consensus pattern (12 bp):
TTTTTTCTTTTT
Found at i:667335 original size:27 final size:26
Alignment explanation
Indices: 667273--667337 Score: 69
Period size: 27 Copynumber: 2.5 Consensus size: 26
667263 TAATATTTCC
667273 ATATTCAAA-AATCTATAATTCTTGA
1 ATATTCAAAGAATCTATAATTCTTGA
* * * *
667298 AGAATTAAAAGAATCTTTAATTCATTTA
1 A-TATTCAAAGAATCTATAATTC-TTGA
667326 ATATTCAAAGAA
1 ATATTCAAAGAA
667338 CTAAAGATTA
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
25 1 0.03
26 6 0.19
27 20 0.65
28 4 0.13
ACGTcount: A:0.48, C:0.09, G:0.06, T:0.37
Consensus pattern (26 bp):
ATATTCAAAGAATCTATAATTCTTGA
Found at i:667826 original size:26 final size:26
Alignment explanation
Indices: 667780--667832 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
667770 AAAAAATTTC
*
667780 ATGTTTATGAAAATGCTTAAAAATGAA
1 ATGTATATGAAAATGC-TAAAAATGAA
667807 ATGTATATGCAAAATG-TAAAAATGAA
1 ATGTATATG-AAAATGCTAAAAATGAA
667833 TGAAATATTC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
26 10 0.42
27 8 0.33
28 6 0.25
ACGTcount: A:0.51, C:0.04, G:0.15, T:0.30
Consensus pattern (26 bp):
ATGTATATGAAAATGCTAAAAATGAA
Found at i:670590 original size:7 final size:7
Alignment explanation
Indices: 670578--670634 Score: 105
Period size: 7 Copynumber: 8.1 Consensus size: 7
670568 TAATATAATT
670578 GAGTGCA
1 GAGTGCA
670585 GAGTGCA
1 GAGTGCA
670592 GAGTGCA
1 GAGTGCA
670599 GAGTGCA
1 GAGTGCA
670606 GAGTGCA
1 GAGTGCA
670613 GAGTGCA
1 GAGTGCA
*
670620 GAGTGTA
1 GAGTGCA
670627 GAGTGCA
1 GAGTGCA
670634 G
1 G
670635 GGAGAGAGTA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 48 1.00
ACGTcount: A:0.28, C:0.12, G:0.44, T:0.16
Consensus pattern (7 bp):
GAGTGCA
Found at i:670854 original size:2 final size:2
Alignment explanation
Indices: 670849--670877 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
670839 AAGCATACAT
670849 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
670878 TGACTTATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:672482 original size:23 final size:23
Alignment explanation
Indices: 672427--672496 Score: 61
Period size: 23 Copynumber: 2.9 Consensus size: 23
672417 TCTTTTTGTC
* * *
672427 TTTATTTTTACTTTTTCTTATATT
1 TTTA-TTTTACTTATTATTATTTT
*
672451 TTCATTTTACTTATT-TTATTTT
1 TTTATTTTACTTATTATTATTTT
672473 TTTATCTTTATCATTATTATTATT
1 TTTAT-TTTA-C-TTATTATTATT
672497 AGTGTTAGTA
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
22 10 0.26
23 14 0.37
24 4 0.11
25 5 0.13
26 5 0.13
ACGTcount: A:0.20, C:0.09, G:0.00, T:0.71
Consensus pattern (23 bp):
TTTATTTTACTTATTATTATTTT
Found at i:672487 original size:31 final size:32
Alignment explanation
Indices: 672432--672496 Score: 82
Period size: 31 Copynumber: 2.1 Consensus size: 32
672422 TTGTCTTTAT
672432 TTTTACTTTTTCTTATATTTTCATT-TTACTTA
1 TTTTACTTTTTCTTATATTTTCATTATTA-TTA
*
672464 TTTTA-TTTTT-TTATCTTTATCATTATTATTA
1 TTTTACTTTTTCTTATATTT-TCATTATTATTA
672495 TT
1 TT
672497 AGTGTTAGTA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
30 7 0.23
31 15 0.50
32 8 0.27
ACGTcount: A:0.20, C:0.09, G:0.00, T:0.71
Consensus pattern (32 bp):
TTTTACTTTTTCTTATATTTTCATTATTATTA
Found at i:683845 original size:22 final size:23
Alignment explanation
Indices: 683819--683868 Score: 66
Period size: 22 Copynumber: 2.2 Consensus size: 23
683809 TCGAATAAAG
* *
683819 AAAAAGAAAAAGGAAAAAACA-A
1 AAAAACAAAAAGCAAAAAACAGA
*
683841 AAAAACAAAAAGCAAAAAAGAGA
1 AAAAACAAAAAGCAAAAAACAGA
683864 AAAAA
1 AAAAA
683869 TGTTTAGGGT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
22 18 0.75
23 6 0.25
ACGTcount: A:0.82, C:0.06, G:0.12, T:0.00
Consensus pattern (23 bp):
AAAAACAAAAAGCAAAAAACAGA
Found at i:683954 original size:14 final size:14
Alignment explanation
Indices: 683935--683964 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
683925 GAGAAAGAAC
683935 AAAAGAAAAAAAGA
1 AAAAGAAAAAAAGA
*
683949 AAAAGAAAAAGAGA
1 AAAAGAAAAAAAGA
683963 AA
1 AA
683965 TAAGGTGGGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (14 bp):
AAAAGAAAAAAAGA
Found at i:685281 original size:109 final size:109
Alignment explanation
Indices: 685084--685282 Score: 276
Period size: 109 Copynumber: 1.8 Consensus size: 109
685074 GCTTCCCAAT
* * *
685084 TTTAGAGCCAATTTCAACTTTACAGCGAAGGATATTCGACCCAAGACAACACAAGCTCAACTTCA
1 TTTAGAGCCAATTTCAACTTCACAACGAAGGATATTAGACCCAAGACAACACAAGCTCAACTTCA
* * *
685149 CGATGAAGGGGCGACTGATTGTCAAAAATAACTTTTCAAGTTCA
66 CGACGAAGAGGCGACTGACTGTCAAAAATAACTTTTCAAGTTCA
* * *
685193 TTTAGAGTCAATTTCAACTTCATAACGAAGGATATTAGACTCAAGACAACACAAGCTCAACTTCA
1 TTTAGAGCCAATTTCAACTTCACAACGAAGGATATTAGACCCAAGACAACACAAGCTCAACTTCA
*
685258 C-AGCGAAGAGGC-AGCTTACTGTCAA
66 CGA-CGAAGAGGCGA-CTGACTGTCAA
685283 CAAGCAATTT
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
108 2 0.03
109 76 0.97
ACGTcount: A:0.37, C:0.22, G:0.17, T:0.24
Consensus pattern (109 bp):
TTTAGAGCCAATTTCAACTTCACAACGAAGGATATTAGACCCAAGACAACACAAGCTCAACTTCA
CGACGAAGAGGCGACTGACTGTCAAAAATAACTTTTCAAGTTCA
Found at i:687651 original size:17 final size:18
Alignment explanation
Indices: 687613--687661 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
687603 ATTCCATTCT
*
687613 TTTTGTCTT-TATTTTTAC
1 TTTT-TCTTATATTTTCAC
687631 TTTTTCTTATATTTTCA-
1 TTTTTCTTATATTTTCAC
*
687648 TTTTACTTAT-TTTT
1 TTTTTCTTATATTTT
687662 TTTATCTTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
16 4 0.14
17 13 0.46
18 11 0.39
ACGTcount: A:0.14, C:0.10, G:0.02, T:0.73
Consensus pattern (18 bp):
TTTTTCTTATATTTTCAC
Found at i:687675 original size:27 final size:26
Alignment explanation
Indices: 687621--687685 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 26
687611 CTTTTTGTCT
*
687621 TTATTTTTACTTTTTCTTATATTTTCA
1 TTATTATTA-TTTTTCTTATATTTTCA
* *
687648 TT-TTACTTATTTTTTTTATCTTTATCA
1 TTATTA-TTATTTTTCTTATATTT-TCA
687675 TTATTATTATT
1 TTATTATTATT
687686 AGTGCTATTA
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
26 14 0.44
27 15 0.47
28 3 0.09
ACGTcount: A:0.20, C:0.09, G:0.00, T:0.71
Consensus pattern (26 bp):
TTATTATTATTTTTCTTATATTTTCA
Found at i:690129 original size:139 final size:137
Alignment explanation
Indices: 689918--690333 Score: 462
Period size: 137 Copynumber: 3.0 Consensus size: 137
689908 TCGAATAACC
** * * * * **
689918 AAAATGAAACCTTGAGCATAAAAGCAAGGACCAAGTAAAAAATTCTTCTAAATTAGAGGAAT-AG
1 AAAATGAAACCTTGA--ATAAAAGTGAGGACCAAATTAAAAATTCTCCTAAATTAAAGGTCTAAG
*
689982 ATATGAAATTAAGCCTAGAATGGAGGCTCTAATTATTAACCTATTCAATTTTAACCAATTTATTA
64 -TATGAAATTAAGCCTA-AATGGAGGCTCTAATTATTAACCTATTCAATTTTAACCAATTCA-TA
*
690047 AATCTAATAATT
126 AATCAAATAATT
* *
690059 AAAATGAAACCTTGATTAAAAGTGAGAACCAAATTAAAAATTCTCCTAAATTAAAGGTCTAAGTA
1 AAAATGAAACCTTGAATAAAAGTGAGGACCAAATTAAAAATTCTCCTAAATTAAAGGTCTAAGTA
* * * * * *
690124 TGAAATTAAGCCCAAAGTAGAGGCTTTAGTTATTAACCTATTCAATTCTAACCAA-TCATGAATC
66 TGAAATTAAGCCTAAA-TGGAGGCTCTAATTATTAACCTATTCAATTTTAACCAATTCATAAATC
690188 AAATAATT
130 AAATAATT
* * ** * *
690196 AAAATGGAACCTCGAGCAAAAGTGAGGACCAAATTAAACATTCTCTTAAATTAAA-GTACTAAGT
1 AAAATGAAACCTTGAATAAAAGTGAGGACCAAATTAAAAATTCTCCTAAATTAAAGGT-CTAAGT
* * * * *
690260 ATGAAATAAAGCCTAAAATGAAGGTTCAAATTATTAACCTATTCAATTTTAACCAATT-ATGGAA
65 ATGAAATTAAGCCT-AAATGGAGGCTCTAATTATTAACCTATTCAATTTTAACCAATTCAT-AAA
690324 TCAAATAATT
128 TCAAATAATT
690334 TTAACCTGTC
Statistics
Matches: 235, Mismatches: 34, Indels: 15
0.83 0.12 0.05
Matches are distributed among these distances:
136 2 0.01
137 111 0.47
138 21 0.09
139 84 0.36
140 2 0.01
141 15 0.06
ACGTcount: A:0.45, C:0.14, G:0.12, T:0.29
Consensus pattern (137 bp):
AAAATGAAACCTTGAATAAAAGTGAGGACCAAATTAAAAATTCTCCTAAATTAAAGGTCTAAGTA
TGAAATTAAGCCTAAATGGAGGCTCTAATTATTAACCTATTCAATTTTAACCAATTCATAAATCA
AATAATT
Found at i:694598 original size:7 final size:7
Alignment explanation
Indices: 694586--694619 Score: 59
Period size: 7 Copynumber: 4.9 Consensus size: 7
694576 AATGAATGTA
694586 AAGAATG
1 AAGAATG
694593 AAGAATG
1 AAGAATG
*
694600 AATAATG
1 AAGAATG
694607 AAGAATG
1 AAGAATG
694614 AAGAAT
1 AAGAAT
694620 AAAAATGTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.59, C:0.00, G:0.24, T:0.18
Consensus pattern (7 bp):
AAGAATG
Found at i:697344 original size:3 final size:3
Alignment explanation
Indices: 697338--697373 Score: 54
Period size: 3 Copynumber: 12.0 Consensus size: 3
697328 AAAAATAAGT
* *
697338 TAA TAA TAA TAA TAA TAA TAA CAA TAA TAA AAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
697374 AAGGGTATGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (3 bp):
TAA
Found at i:697751 original size:134 final size:134
Alignment explanation
Indices: 697561--698136 Score: 787
Period size: 134 Copynumber: 4.3 Consensus size: 134
697551 TGATTCATTC
* * * * * *
697561 CACTGTTCTTCATGGAATATTGAATCAGAATCGATTTGCTTCACTACTCTTCAGGAATACTAAAT
1 CACTGCTCTTCAGGGAAGATTGAATCATAATCGATTTGCTTCACTGCTCTTCAGGAATACCAAAT
* * * * * * *
697626 CTGAATGAAGAAGAATCTACTCCACTACTATTTAGGGGAGATCAGACTCGAGAAAACTTTAAACT
66 CTGAAAGAAGAAAAATCTGCTCCACTACTCTTTAGGGGAGATCAGACTCGAGAAAACTTTGATCC
697691 ACTT
131 ACTT
** * * * * *
697695 CACTATTCTTCAGGGAAGATTGAATTATAATCGATTTGTTTCACTGCTCTTTAGGAAAACTAAAT
1 CACTGCTCTTCAGGGAAGATTGAATCATAATCGATTTGCTTCACTGCTCTTCAGGAATACCAAAT
* *
697760 CTGAAAGAAGAAAAATCTTCTCCACTACTCTTTAGGGGAGATCAGACT--AGGAAACTTTGATCC
66 CTGAAAGAAGAAAAATCTGCTCCACTACTCTTTAGGGGAGATCAGACTCGAGAAAACTTTGATCC
697823 ACTT
131 ACTT
* * * * *
697827 CACTGCTCTTCAAGGAAGATTAAATCATAATCGATTTGCTTTACTGTTCTTCAAGAATACCAAAT
1 CACTGCTCTTCAGGGAAGATTGAATCATAATCGATTTGCTTCACTGCTCTTCAGGAATACCAAAT
* * * *
697892 CTGAAAGAACAAGAATATGCTACACTACTCTTTAGGGGAGATCAGACTCGAGAAAACTTTGATCC
66 CTGAAAGAAGAAAAATCTGCTCCACTACTCTTTAGGGGAGATCAGACTCGAGAAAACTTTGATCC
697957 ACTT
131 ACTT
* * * *
697961 CACTGCTCTTCAGGGAAGATTGAATCAGAATCGATTTACTTCACTTCTCTTCAGGAAGACCAAAT
1 CACTGCTCTTCAGGGAAGATTGAATCATAATCGATTTGCTTCACTGCTCTTCAGGAATACCAAAT
*
698026 CTGAAAGAAGAAAAATCTGCTCCACTATTCTTTAGGGGAGATCAGACTCGAGAAAACTTTGATCC
66 CTGAAAGAAGAAAAATCTGCTCCACTACTCTTTAGGGGAGATCAGACTCGAGAAAACTTTGATCC
698091 ACTT
131 ACTT
* * *
698095 TACTGCTCTTTAGGGAAGATTGAATCATAATTGATTTGCTTC
1 CACTGCTCTTCAGGGAAGATTGAATCATAATCGATTTGCTTC
698137 TCTTGTCTTC
Statistics
Matches: 386, Mismatches: 54, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
132 111 0.29
134 275 0.71
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (134 bp):
CACTGCTCTTCAGGGAAGATTGAATCATAATCGATTTGCTTCACTGCTCTTCAGGAATACCAAAT
CTGAAAGAAGAAAAATCTGCTCCACTACTCTTTAGGGGAGATCAGACTCGAGAAAACTTTGATCC
ACTT
Found at i:698063 original size:266 final size:266
Alignment explanation
Indices: 697561--698165 Score: 809
Period size: 266 Copynumber: 2.3 Consensus size: 266
697551 TGATTCATTC
* * * * * * * *
697561 CACTGTTCTTCATGGAATATTGAATCAGAATCGATTTGCTTCACTACTCTTCAGGAATACTAAAT
1 CACTGCTCTTCAAGGAAGATTGAATCATAATCGATTTGCTTTACT-TTCTTCAAGAATACCAAAT
* * * * *
697626 CTGAATGAAGAAGAATCTACTCCACTACTATTTAGGGGAGATCAGACTCGAGAAAACTTTAAACT
65 CTGAAAGAACAAGAATATACTACACTACTATTTAGGGGAGATCAGACTCGAGAAAACTTTAAACC
* * * ** * *
697691 ACTTCACTATTCTTCAGGGAAGATTGAATTATAATCGATTTGTTTCACTGCTCTTTAGGAAAACT
130 ACTTCACTACTCTTCAGGGAAGATTGAATCAGAATCGATTTACTTCACTGCTCTTCAGGAAAACC
* *
697756 AAATCTGAAAGAAGAAAAATCTTCTCCACTACTCTTTAGGGGAGATCAGACT-AGGAAACTTTGA
195 AAATCTGAAAGAAGAAAAATCTGCTCCACTACTCTTTAGGGGAGATCAGACTCAGAAAACTTTGA
697820 TCCACTT
260 TCCACTT
*
697827 CACTGCTCTTCAAGGAAGATTAAATCATAATCGATTTGCTTTACTGTTCTTCAAGAATACCAAAT
1 CACTGCTCTTCAAGGAAGATTGAATCATAATCGATTTGCTTTACT-TTCTTCAAGAATACCAAAT
* * * *
697892 CTGAAAGAACAAGAATATGCTACACTACTCTTTAGGGGAGATCAGACTCGAGAAAACTTTGATCC
65 CTGAAAGAACAAGAATATACTACACTACTATTTAGGGGAGATCAGACTCGAGAAAACTTTAAACC
* * *
697957 ACTTCACTGCTCTTCAGGGAAGATTGAATCAGAATCGATTTACTTCACTTCTCTTCAGGAAGACC
130 ACTTCACTACTCTTCAGGGAAGATTGAATCAGAATCGATTTACTTCACTGCTCTTCAGGAAAACC
*
698022 AAATCTGAAAGAAGAAAAATCTGCTCCACTATTCTTTAGGGGAGATCAGACTCGAGAAAACTTTG
195 AAATCTGAAAGAAGAAAAATCTGCTCCACTACTCTTTAGGGGAGATCAGACTC-AGAAAACTTTG
698087 ATCCACTT
259 ATCCACTT
* * * * * * *
698095 TACTGCTCTTTAGGGAAGATTGAATCATAATTGATTTGCTTCT-CTTGTCTTCAAGAAGATCGAA
1 CACTGCTCTTCAAGGAAGATTGAATCATAATCGATTTGCTT-TACTT-TCTTCAAGAATACCAAA
698159 TCTGAAA
64 TCTGAAA
698166 ATAAAACAGT
Statistics
Matches: 295, Mismatches: 40, Indels: 6
0.87 0.12 0.02
Matches are distributed among these distances:
266 216 0.73
267 1 0.00
268 77 0.26
269 1 0.00
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (266 bp):
CACTGCTCTTCAAGGAAGATTGAATCATAATCGATTTGCTTTACTTTCTTCAAGAATACCAAATC
TGAAAGAACAAGAATATACTACACTACTATTTAGGGGAGATCAGACTCGAGAAAACTTTAAACCA
CTTCACTACTCTTCAGGGAAGATTGAATCAGAATCGATTTACTTCACTGCTCTTCAGGAAAACCA
AATCTGAAAGAAGAAAAATCTGCTCCACTACTCTTTAGGGGAGATCAGACTCAGAAAACTTTGAT
CCACTT
Found at i:698895 original size:45 final size:45
Alignment explanation
Indices: 698722--699007 Score: 278
Period size: 45 Copynumber: 6.4 Consensus size: 45
698712 TACTTAAAAG
* * * * * * *
698722 TTGACTCTTCTCCGCGAGAAAGTCAAAAAGGAAAACACCAAAAGA
1 TTGACTCATCTTCACGAGAAAGTCAAGAAGGACAACACTAAAATA
* *
698767 TCGACTTC-TCTT-AGTGAGAAAGTCAAGAAGGACAACACTAAAATA
1 TTGAC-TCATCTTCA-CGAGAAAGTCAAGAAGGACAACACTAAAATA
* * * * *
698812 TTGACTTATCTTCCCAAAAAAAGTCAAGAAGGGCAACACTAAAATA
1 TTGACTCATCTTCAC-GAGAAAGTCAAGAAGGACAACACTAAAATA
*
698858 TTGTCTCATCTTCACGAGAAAGTCAAGAAGGACAACACTAAAATA
1 TTGACTCATCTTCACGAGAAAGTCAAGAAGGACAACACTAAAATA
* * *
698903 TTGACTCATCTTCACGAGAAAGACAAGGAA-AACAACACTGAAATA
1 TTGACTCATCTTCACGAGAAAGTCAA-GAAGGACAACACTAAAATA
* * * * *
698948 TTGACTCCTTTTCACGAGAAAGTCAAG-A--ATAACACTGAAAGA
1 TTGACTCATCTTCACGAGAAAGTCAAGAAGGACAACACTAAAATA
*
698990 TTGGCTCATCTTCACGAG
1 TTGACTCATCTTCACGAG
699008 GGGGTCAAGA
Statistics
Matches: 202, Mismatches: 33, Indels: 15
0.81 0.13 0.06
Matches are distributed among these distances:
42 27 0.13
43 1 0.00
44 2 0.01
45 128 0.63
46 44 0.22
ACGTcount: A:0.42, C:0.20, G:0.16, T:0.21
Consensus pattern (45 bp):
TTGACTCATCTTCACGAGAAAGTCAAGAAGGACAACACTAAAATA
Found at i:699004 original size:42 final size:40
Alignment explanation
Indices: 698846--699516 Score: 404
Period size: 38 Copynumber: 16.9 Consensus size: 40
698836 CAAGAAGGGC
* * * *
698846 AACACTAAAATATTGTCTCATCTTCACGAGAAAGTCAAGAAGGAC
1 AACACT-AAAGATTGACTC-TCTTCACGAGGAAGTCAAG-A--AT
* * * *
698891 AACACTAAAATATTGACTCATCTTCACGAGAAAGACAAGGAAAAC
1 AACACT-AAAGATTGACTC-TCTTCACGAGGAAGTCAA-G--AAT
* * *
698936 AACACTGAAATATTGACTCCTTTTCACGAGAAAGTCAAGAAT
1 AACACT-AAAGATTGACT-CTCTTCACGAGGAAGTCAAGAAT
* **
698978 AACACTGAAAGATTGGCTCATCTTCACGAGGGGGTCAAGAAT
1 AACACT-AAAGATTGACTC-TCTTCACGAGGAAGTCAAGAAT
* *
699020 -A-AC-AAAGATCGACTTCTCTTCATGAGGAAGTCAAGAAT
1 AACACTAAAGATTGAC-TCTCTTCACGAGGAAGTCAAGAAT
* * * *
699058 AATATTGAAAGATTGACTTCTCTTCATGAGGAAGTCATGAAT
1 AACACT-AAAGATTGAC-TCTCTTCACGAGGAAGTCAAGAAT
* * * *
699100 -A-A-TAAAAATTGACTTCTCTTCACGAGGTAGTAAAAAAT
1 AACACTAAAGATTGAC-TCTCTTCACGAGGAAGTCAAGAAT
699138 -A-AC-AAAGATTGACCTCTCTTCACGAGGAAGTCAAGAAT
1 AACACTAAAGATTGA-CTCTCTTCACGAGGAAGTCAAGAAT
* *
699176 --GAC-AAAGATTGACTTCTCTTCACGAGGAAGTCAGGAAT
1 AACACTAAAGATTGAC-TCTCTTCACGAGGAAGTCAAGAAT
** * *
699214 AACAAAGAAAGATTGACTCCTCTTCATGAGGGAGTCAAGAAT
1 AAC-ACTAAAGATTGACT-CTCTTCACGAGGAAGTCAAGAAT
* * * *
699256 -A-AC-AAAGATTGAATTCTCTTCACGAGGTAGTTAAAAAT
1 AACACTAAAGATTG-ACTCTCTTCACGAGGAAGTCAAGAAT
*
699294 -A-AC-AATGATT-ATCCTCTCTTCACGAGGAAGTCAAGAAT
1 AACACTAAAGATTGA--CTCTCTTCACGAGGAAGTCAAGAAT
*
699332 --GAC-AAAGATTGACTTCTCTTCACGAGGAAGTC---AAT
1 AACACTAAAGATTGAC-TCTCTTCACGAGGAAGTCAAGAAT
*** * * *
699367 AACAAC-AAAGACCAACTTATCTTCACAAGGAAGTCAAAAAT
1 AAC-ACTAAAGATTGAC-TCTCTTCACGAGGAAGTCAAGAAT
699408 -A-AC-AAAGATTGACTTCTCTTCACGAGGAAGTCAAGAAT
1 AACACTAAAGATTGAC-TCTCTTCACGAGGAAGTCAAGAAT
* *
699446 -A-AC-AAAGATCGATTTCTCTTCACGAGGAAGTCAAGAAT
1 AACACTAAAGATTGA-CTCTCTTCACGAGGAAGTCAAGAAT
* *
699484 AACA-T-AA-ATCGACTTCTCTTTACGAGGAAGTCA
1 AACACTAAAGATTGAC-TCTCTTCACGAGGAAGTCA
699517 GGTTGAAGCT
Statistics
Matches: 527, Mismatches: 64, Indels: 77
0.79 0.10 0.12
Matches are distributed among these distances:
35 3 0.01
36 1 0.00
37 2 0.00
38 319 0.61
39 12 0.02
40 6 0.01
41 9 0.02
42 99 0.19
44 1 0.00
45 71 0.13
46 2 0.00
47 2 0.00
ACGTcount: A:0.40, C:0.18, G:0.17, T:0.24
Consensus pattern (40 bp):
AACACTAAAGATTGACTCTCTTCACGAGGAAGTCAAGAAT
Found at i:699040 original size:38 final size:38
Alignment explanation
Indices: 698947--699516 Score: 615
Period size: 38 Copynumber: 14.7 Consensus size: 38
698937 ACACTGAAAT
* * *
698947 ATTGACTCCTTTTCACGAGAAAGTCAAGAATAACACTGAAAG
1 ATTGACTTCTCTTCACGAGGAAGTCAAGAAT-A-AC--AAAG
* **
698989 ATTGGC-TCATCTTCACGAGGGGGTCAAGAATAACAAAG
1 ATTGACTTC-TCTTCACGAGGAAGTCAAGAATAACAAAG
* * *
699027 ATCGACTTCTCTTCATGAGGAAGTCAAGAATAATATTGAAAG
1 ATTGACTTCTCTTCACGAGGAAGTCAAGAAT-A-A--CAAAG
* * * *
699069 ATTGACTTCTCTTCATGAGGAAGTCATGAATAATAAAA
1 ATTGACTTCTCTTCACGAGGAAGTCAAGAATAACAAAG
* * *
699107 ATTGACTTCTCTTCACGAGGTAGTAAAAAATAACAAAG
1 ATTGACTTCTCTTCACGAGGAAGTCAAGAATAACAAAG
* *
699145 ATTGACCTCTCTTCACGAGGAAGTCAAGAATGACAAAG
1 ATTGACTTCTCTTCACGAGGAAGTCAAGAATAACAAAG
*
699183 ATTGACTTCTCTTCACGAGGAAGTCAGGAATAACAAAGAAAG
1 ATTGACTTCTCTTCACGAGGAAGTCAAGAATAAC----AAAG
* * *
699225 ATTGACTCCTCTTCATGAGGGAGTCAAGAATAACAAAG
1 ATTGACTTCTCTTCACGAGGAAGTCAAGAATAACAAAG
* * * * *
699263 ATTGAATTCTCTTCACGAGGTAGTTAAAAATAACAATG
1 ATTGACTTCTCTTCACGAGGAAGTCAAGAATAACAAAG
* *
699301 ATT-ATCCTCTCTTCACGAGGAAGTCAAGAATGACAAAG
1 ATTGA-CTTCTCTTCACGAGGAAGTCAAGAATAACAAAG
* *
699339 ATTGACTTCTCTTCACGAGGAAGTCAATAACAACAAAG
1 ATTGACTTCTCTTCACGAGGAAGTCAAGAATAACAAAG
*** * * *
699377 ACCAACTTATCTTCACAAGGAAGTCAAAAATAACAAAG
1 ATTGACTTCTCTTCACGAGGAAGTCAAGAATAACAAAG
699415 ATTGACTTCTCTTCACGAGGAAGTCAAGAATAACAAAG
1 ATTGACTTCTCTTCACGAGGAAGTCAAGAATAACAAAG
* *
699453 ATCGATTTCTCTTCACGAGGAAGTCAAGAATAACATAA-
1 ATTGACTTCTCTTCACGAGGAAGTCAAGAATAACA-AAG
* *
699491 ATCGACTTCTCTTTACGAGGAAGTCA
1 ATTGACTTCTCTTCACGAGGAAGTCA
699517 GGTTGAAGCT
Statistics
Matches: 445, Mismatches: 70, Indels: 30
0.82 0.13 0.06
Matches are distributed among these distances:
37 1 0.00
38 341 0.77
39 6 0.01
40 4 0.01
41 3 0.01
42 90 0.20
ACGTcount: A:0.39, C:0.18, G:0.18, T:0.25
Consensus pattern (38 bp):
ATTGACTTCTCTTCACGAGGAAGTCAAGAATAACAAAG
Found at i:699273 original size:156 final size:156
Alignment explanation
Indices: 698985--699518 Score: 677
Period size: 156 Copynumber: 3.4 Consensus size: 156
698975 AATAACACTG
* ** *
698985 AAAGATTG-GCTCATCTTCACGAGGGGGTCAAGAATAACAAAGATCGACTTCTCTTCATGAGGAA
1 AAAGATTGACCTC-TCTTCACGAGGAAGTCAAGAATAACAAAGATCGACTTCTCTTCACGAGGAA
* * ** * * *
699049 GTCAAGAATAATATTGAAAGATTGACTTCTCTTCATGAGGAAGTCATGAATAATAAAAATTGACT
65 GTCAGGAATAACAAAGAAAGATTGACTTCTCTTCATGAGGAAGTCAAGAATAACAAAGATTGACT
699114 TCTCTTCACGAGGTAGTAAAAAATAAC
130 TCTCTTCACGAGGTAGTAAAAAATAAC
* *
699141 AAAGATTGACCTCTCTTCACGAGGAAGTCAAGAATGACAAAGATTGACTTCTCTTCACGAGGAAG
1 AAAGATTGACCTCTCTTCACGAGGAAGTCAAGAATAACAAAGATCGACTTCTCTTCACGAGGAAG
* * *
699206 TCAGGAATAACAAAGAAAGATTGACTCCTCTTCATGAGGGAGTCAAGAATAACAAAGATTGAATT
66 TCAGGAATAACAAAGAAAGATTGACTTCTCTTCATGAGGAAGTCAAGAATAACAAAGATTGACTT
*
699271 CTCTTCACGAGGTAGTTAAAAATAAC
131 CTCTTCACGAGGTAGTAAAAAATAAC
* * *
699297 AATGATT-ATCCTCTCTTCACGAGGAAGTCAAGAATGACAAAGATTGACTTCTCTTCACGAGGAA
1 AAAGATTGA-CCTCTCTTCACGAGGAAGTCAAGAATAACAAAGATCGACTTCTCTTCACGAGGAA
* *** * ** *
699361 GTC---AATAAC-AACAAAGACCAACTTATCTTCACAAGGAAGTCAAAAATAACAAAGATTGACT
65 GTCAGGAATAACAAAGAAAGATTGACTTCTCTTCATGAGGAAGTCAAGAATAACAAAGATTGACT
* * *
699422 TCTCTTCACGAGGAAGTCAAGAATAAC
130 TCTCTTCACGAGGTAGTAAAAAATAAC
* ** *
699449 AAAGATCGATTTCTCTTCACGAGGAAGTCAAGAATAACATAA-ATCGACTTCTCTTTACGAGGAA
1 AAAGATTGACCTCTCTTCACGAGGAAGTCAAGAATAACA-AAGATCGACTTCTCTTCACGAGGAA
699513 GTCAGG
65 GTCAGG
699519 TTGAAGCTTC
Statistics
Matches: 332, Mismatches: 39, Indels: 15
0.86 0.10 0.04
Matches are distributed among these distances:
152 120 0.36
153 9 0.03
155 1 0.00
156 199 0.60
157 3 0.01
ACGTcount: A:0.39, C:0.18, G:0.19, T:0.25
Consensus pattern (156 bp):
AAAGATTGACCTCTCTTCACGAGGAAGTCAAGAATAACAAAGATCGACTTCTCTTCACGAGGAAG
TCAGGAATAACAAAGAAAGATTGACTTCTCTTCATGAGGAAGTCAAGAATAACAAAGATTGACTT
CTCTTCACGAGGTAGTAAAAAATAAC
Found at i:701394 original size:17 final size:17
Alignment explanation
Indices: 701372--701438 Score: 77
Period size: 17 Copynumber: 4.0 Consensus size: 17
701362 TATTTGATTT
701372 ATTTTTTCTCATTTTTC
1 ATTTTTTCTCATTTTTC
701389 ATTTTTTCTCATTTTTC
1 ATTTTTTCTCATTTTTC
*
701406 TTCTTTTTCT-ATATTTT-
1 AT-TTTTTCTCAT-TTTTC
*
701423 ATCTTTTCTC-TTTTTC
1 ATTTTTTCTCATTTTTC
701439 CCTTTTGTTT
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
15 4 0.09
16 7 0.16
17 21 0.49
18 11 0.26
ACGTcount: A:0.10, C:0.18, G:0.00, T:0.72
Consensus pattern (17 bp):
ATTTTTTCTCATTTTTC
Found at i:701444 original size:22 final size:22
Alignment explanation
Indices: 701419--701474 Score: 53
Period size: 22 Copynumber: 2.5 Consensus size: 22
701409 TTTTTCTATA
*
701419 TTTTATCTTTTC-TCTTTTTCCC
1 TTTTAT-TTTTCTTATTTTTCCC
* *
701441 TTTTGTTTTTCTTATTTTTCTC
1 TTTTATTTTTCTTATTTTTCCC
701463 TTTT-TTTATTCT
1 TTTTATTT-TTCT
701475 CTCTCCTCTT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
21 8 0.28
22 21 0.72
ACGTcount: A:0.05, C:0.18, G:0.02, T:0.75
Consensus pattern (22 bp):
TTTTATTTTTCTTATTTTTCCC
Found at i:708406 original size:3 final size:3
Alignment explanation
Indices: 708400--708463 Score: 128
Period size: 3 Copynumber: 21.3 Consensus size: 3
708390 AAAAAGTAGT
708400 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
708448 TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA T
708464 GGGTCCGGGC
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 61 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:714267 original size:40 final size:40
Alignment explanation
Indices: 714223--714335 Score: 154
Period size: 40 Copynumber: 2.8 Consensus size: 40
714213 TTCGTTCGAG
*
714223 GGATCTCTCGGCGTCTTCAACATAATTTCCATGCAAAATA
1 GGATCTCTCGGCGTCTTCAACACAATTTCCATGCAAAATA
* * * *
714263 GGATCTCTTGACGTCTTCAACACAATTTCCATGCAAACTT
1 GGATCTCTCGGCGTCTTCAACACAATTTCCATGCAAAATA
* * *
714303 GGAGCTCTCAGCATCTTCAACACAATTTCCATG
1 GGATCTCTCGGCGTCTTCAACACAATTTCCATG
714336 TTGCTTGGAT
Statistics
Matches: 63, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 63 1.00
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.30
Consensus pattern (40 bp):
GGATCTCTCGGCGTCTTCAACACAATTTCCATGCAAAATA
Found at i:717164 original size:110 final size:109
Alignment explanation
Indices: 716989--717205 Score: 262
Period size: 110 Copynumber: 2.0 Consensus size: 109
716979 AGCCCCTCTT
** * * *
716989 TTATAAACATACGGGGCATGCATTATTGGTTGGTCTAATAGACCTATCCCAATGCATGCACAAAG
1 TTATAAACATACAAGGCATGCATTAATGGTTGGTCTAATAGACCTATCCCAACGCATGCAAAAAG
* *
717054 AAATTAGACC-CCATGT-AAAGAAGACGCTGAGAAATC-CCCCAC
66 AAATTAGACCTCCATATGAAA-AAGACGCCGAGAAATCGCCCCAC
* *
717096 TTATAAACATACAATGCATGCA-TAATGGTTGGTCTAATTATTAGACCTATCCCAGCGCATGCAA
1 TTATAAACATACAAGGCATGCATTAATGGTTGGTCT-A--A-TAGACCTATCCCAACGCATGCAA
* *
717160 AAAGAAATTCGGCCTCCATATGAAAAAGACGCCGAGAAATCGCCCC
62 AAAGAAATTAGACCTCCATATGAAAAAGACGCCGAGAAATCGCCCC
717206 CTGCTGAAGA
Statistics
Matches: 92, Mismatches: 11, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
106 12 0.13
107 20 0.22
109 1 0.01
110 32 0.35
111 20 0.22
112 7 0.08
ACGTcount: A:0.36, C:0.24, G:0.18, T:0.23
Consensus pattern (109 bp):
TTATAAACATACAAGGCATGCATTAATGGTTGGTCTAATAGACCTATCCCAACGCATGCAAAAAG
AAATTAGACCTCCATATGAAAAAGACGCCGAGAAATCGCCCCAC
Found at i:717617 original size:25 final size:25
Alignment explanation
Indices: 717589--717639 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
717579 AGGATCAGAC
*
717589 TATCGATATCACTTATACTGATGTT
1 TATCGATATCACTTATACCGATGTT
* **
717614 TATCGATCTTTCTTATACCGATGTT
1 TATCGATATCACTTATACCGATGTT
717639 T
1 T
717640 GAGTTTAATG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.24, C:0.18, G:0.12, T:0.47
Consensus pattern (25 bp):
TATCGATATCACTTATACCGATGTT
Found at i:719043 original size:29 final size:29
Alignment explanation
Indices: 719005--719071 Score: 125
Period size: 29 Copynumber: 2.3 Consensus size: 29
718995 TTCGGTTTGA
719005 TGATGGGTTTGTAATGGATATGGGCTGAT
1 TGATGGGTTTGTAATGGATATGGGCTGAT
*
719034 TGATGGGTTTGTAATGGATATGGGTTGAT
1 TGATGGGTTTGTAATGGATATGGGCTGAT
719063 TGATGGGTT
1 TGATGGGTT
719072 GCATTTACAT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.19, C:0.01, G:0.39, T:0.40
Consensus pattern (29 bp):
TGATGGGTTTGTAATGGATATGGGCTGAT
Found at i:719058 original size:17 final size:17
Alignment explanation
Indices: 719007--719059 Score: 53
Period size: 17 Copynumber: 3.4 Consensus size: 17
718997 CGGTTTGATG
719007 ATGGGTTTGTAATGGAT
1 ATGGGTTTGTAATGGAT
* *
719024 ATGGG-CTG--ATTG--
1 ATGGGTTTGTAATGGAT
719036 ATGGGTTTGTAATGGAT
1 ATGGGTTTGTAATGGAT
719053 ATGGGTT
1 ATGGGTT
719060 GATTGATGGG
Statistics
Matches: 27, Mismatches: 4, Indels: 10
0.66 0.10 0.24
Matches are distributed among these distances:
12 5 0.19
13 2 0.07
14 3 0.11
15 3 0.11
16 2 0.07
17 12 0.44
ACGTcount: A:0.21, C:0.02, G:0.38, T:0.40
Consensus pattern (17 bp):
ATGGGTTTGTAATGGAT
Found at i:719133 original size:3 final size:3
Alignment explanation
Indices: 719113--719221 Score: 77
Period size: 3 Copynumber: 37.0 Consensus size: 3
719103 TGTATTTTGA
* * *
719113 AAT AAT AAA AAGT TAT AAT AAT AAT -AT AGTT AAT AAT AAT AAT AAT
1 AAT AAT AAT AA-T AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT
* * *
719159 AAT AAAT AA- AAT -AT AAT -AT AGT AAT ATGT ATT AA- AAT AAT AAT
1 AAT -AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT
*
719202 AAT AAT AGT AA- AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT
719222 GGAATAGGGT
Statistics
Matches: 83, Mismatches: 13, Indels: 20
0.72 0.11 0.17
Matches are distributed among these distances:
2 12 0.14
3 63 0.76
4 8 0.10
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.34
Consensus pattern (3 bp):
AAT
Found at i:719184 original size:46 final size:43
Alignment explanation
Indices: 719113--719221 Score: 116
Period size: 46 Copynumber: 2.5 Consensus size: 43
719103 TGTATTTTGA
**
719113 AATAATAAA-AAGTTATAATAATAATAT-AGTTAATAATAATAAT
1 AATAATAAATAAAATATAATAATAATATGA-TTAA-AATAATAAT
719156 AATAATAAATAAAATATAATATAGTAATATGTATTAAAATAATAAT
1 AATAATAAATAAAATATAATA-A-TAATATG-ATTAAAATAATAAT
*
719202 AATAAT-AGTAAAATAATAAT
1 AATAATAAATAAAAT-ATAAT
719222 GGAATAGGGT
Statistics
Matches: 57, Mismatches: 3, Indels: 9
0.83 0.04 0.13
Matches are distributed among these distances:
43 9 0.16
44 9 0.16
45 8 0.14
46 26 0.46
47 4 0.07
48 1 0.02
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.34
Consensus pattern (43 bp):
AATAATAAATAAAATATAATAATAATATGATTAAAATAATAAT
Found at i:726841 original size:32 final size:32
Alignment explanation
Indices: 726793--726869 Score: 127
Period size: 32 Copynumber: 2.4 Consensus size: 32
726783 CTACTACTAA
* *
726793 TAATAATAACAATTAAAATAACAAAGCATATTT
1 TAAT-ATAATAATTAAAATAACAAAGCATAATT
726826 TAATATAATAATTAAAATAACAAAGCATAATT
1 TAATATAATAATTAAAATAACAAAGCATAATT
726858 TAATATAATAAT
1 TAATATAATAAT
726870 AACTAAAATA
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
32 38 0.90
33 4 0.10
ACGTcount: A:0.58, C:0.06, G:0.03, T:0.32
Consensus pattern (32 bp):
TAATATAATAATTAAAATAACAAAGCATAATT
Found at i:726869 original size:35 final size:34
Alignment explanation
Indices: 726790--726879 Score: 121
Period size: 32 Copynumber: 2.6 Consensus size: 34
726780 AAACTACTAC
*
726790 TAATAATAATAACAATTAAAATAACAAAGCATATT
1 TAAT-ATAATAATAATTAAAATAACAAAGCATATT
*
726825 TTA-AT-ATAATAATTAAAATAACAAAGCATAATT
1 TAATATAATAATAATTAAAATAACAAAGCAT-ATT
*
726858 TAATATAATAATAACTAAAATA
1 TAATATAATAATAATTAAAATA
726880 GCAATGCACA
Statistics
Matches: 48, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
32 23 0.48
33 7 0.15
34 2 0.04
35 16 0.33
ACGTcount: A:0.60, C:0.07, G:0.02, T:0.31
Consensus pattern (34 bp):
TAATATAATAATAATTAAAATAACAAAGCATATT
Found at i:727145 original size:71 final size:69
Alignment explanation
Indices: 727070--727319 Score: 187
Period size: 71 Copynumber: 3.5 Consensus size: 69
727060 CCTCTATGGA
** ** *
727070 TGAGGGTTCGTCTACTAATGATGTGTCCTCTATGACTGAGGTTTTGAGTTGCGTTTAACTTCCTC
1 TGAGGGTTC-TCTACTAATGA-GTGTCCTCTATGACTGAGACTCAGAGTTGCGTTCAACTTCCTC
*
727135 CATTGC
64 CATAGC
* * * * * *
727141 TGAGGGTTCATATACTAATGGGGTGTCTTCCATGACTGAGACTCAGGGTTGCGTTCATCTTCCTC
1 TGAGGGTTC-TCTACTAAT-GAGTGTCCTCTATGACTGAGACTCAGAGTTGCGTTCAACTTCCTC
727206 CATAGC
64 CATAGC
* ** * **
727212 TGAGGGTTCTCCTACTAATGAGCTATCCTCTATGGTTGAGGCTC-GAGGTTATGTTCAACTTCCT
1 TGAGGGTTCT-CTACTAATGAG-TGTCCTCTATGACTGAGACTCAGA-GTTGCGTTCAACTTCCT
* * *
727276 CTATGGT
63 CCATAGC
* * * *
727283 TAAGGGTTCACCTACTAACGAGTTGTCATCTATGACT
1 TGAGGGTTC-TCTACTAATGAG-TGTCCTCTATGACT
727320 AAGGCTTGTG
Statistics
Matches: 138, Mismatches: 36, Indels: 10
0.75 0.20 0.05
Matches are distributed among these distances:
70 4 0.03
71 133 0.96
72 1 0.01
ACGTcount: A:0.20, C:0.21, G:0.24, T:0.36
Consensus pattern (69 bp):
TGAGGGTTCTCTACTAATGAGTGTCCTCTATGACTGAGACTCAGAGTTGCGTTCAACTTCCTCCA
TAGC
Found at i:727981 original size:10 final size:9
Alignment explanation
Indices: 727961--727993 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
727951 TATATATATA
*
727961 TTTTTACTT
1 TTTTTCCTT
727970 TTTTTCCTT
1 TTTTTCCTT
727979 TTTTTCCTT
1 TTTTTCCTT
727988 TTTTTC
1 TTTTTC
727994 ATTCTGAAGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.03, C:0.18, G:0.00, T:0.79
Consensus pattern (9 bp):
TTTTTCCTT
Found at i:735899 original size:21 final size:21
Alignment explanation
Indices: 735875--735948 Score: 62
Period size: 21 Copynumber: 3.5 Consensus size: 21
735865 GGTCTTTAGT
735875 TTTAGGGTTTATAGTTTAAGG
1 TTTAGGGTTTATAGTTTAAGG
* *
735896 TTTAGGATTTA-AGGTTTATGG
1 TTTAGGGTTTATA-GTTTAAGG
* ** *
735917 CTTATAGTTTATAATTT-AGAG
1 TTTAGGGTTTATAGTTTAAG-G
735938 TTTAGGGTTTA
1 TTTAGGGTTTA
735949 GAATTTAGGG
Statistics
Matches: 39, Mismatches: 11, Indels: 6
0.70 0.20 0.11
Matches are distributed among these distances:
20 2 0.05
21 36 0.92
22 1 0.03
ACGTcount: A:0.26, C:0.01, G:0.24, T:0.49
Consensus pattern (21 bp):
TTTAGGGTTTATAGTTTAAGG
Found at i:736091 original size:7 final size:7
Alignment explanation
Indices: 736049--736099 Score: 50
Period size: 7 Copynumber: 7.4 Consensus size: 7
736039 GGTTTAATAC
736049 TTAGGGT
1 TTAGGGT
*
736056 TTATGGT
1 TTAGGGT
*
736063 ATAGGGT
1 TTAGGGT
*
736070 TT-GGAT
1 TTAGGGT
*
736076 TTAAGGT
1 TTAGGGT
*
736083 TTAGTGT
1 TTAGGGT
736090 TTAGGGT
1 TTAGGGT
736097 TTA
1 TTA
736100 ATCTAACATG
Statistics
Matches: 33, Mismatches: 10, Indels: 2
0.73 0.22 0.04
Matches are distributed among these distances:
6 5 0.15
7 28 0.85
ACGTcount: A:0.20, C:0.00, G:0.33, T:0.47
Consensus pattern (7 bp):
TTAGGGT
Found at i:738567 original size:22 final size:22
Alignment explanation
Indices: 738526--738592 Score: 116
Period size: 22 Copynumber: 3.0 Consensus size: 22
738516 CTCGTATAAA
738526 TGCACCGAAGTGCCCCGTAGAAT
1 TGCACCGAAGTG-CCCGTAGAAT
738549 TGCACCGAAGTGCCCGTAGAAT
1 TGCACCGAAGTGCCCGTAGAAT
*
738571 TGCACCGTAGTGCCCGTAGAAT
1 TGCACCGAAGTGCCCGTAGAAT
738593 GATGTCCATA
Statistics
Matches: 43, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
22 31 0.72
23 12 0.28
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.19
Consensus pattern (22 bp):
TGCACCGAAGTGCCCGTAGAAT
Found at i:740309 original size:21 final size:21
Alignment explanation
Indices: 740285--740329 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
740275 TCTTGTTCGT
* *
740285 TTGAAGGGGTATCGGTTCCCC
1 TTGAAGGGGTACCGATTCCCC
*
740306 TTGAATGGGTACCGATTCCCC
1 TTGAAGGGGTACCGATTCCCC
740327 TTG
1 TTG
740330 CCCAGAAATC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.16, C:0.24, G:0.29, T:0.31
Consensus pattern (21 bp):
TTGAAGGGGTACCGATTCCCC
Found at i:743901 original size:15 final size:15
Alignment explanation
Indices: 743881--743914 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
743871 TGTAACTCTT
743881 TGATATCCTTTAAGA
1 TGATATCCTTTAAGA
743896 TGATATCCTTTAAGA
1 TGATATCCTTTAAGA
743911 TGAT
1 TGAT
743915 CTCCCGCTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.32, C:0.12, G:0.15, T:0.41
Consensus pattern (15 bp):
TGATATCCTTTAAGA
Found at i:745052 original size:54 final size:54
Alignment explanation
Indices: 744964--745071 Score: 180
Period size: 54 Copynumber: 2.0 Consensus size: 54
744954 TGAAAAGAGT
744964 AAGGCAAGGTCTCCATATTTCTCAAAAAAACTCGTTCTTTCTTTGACTCCCAAA
1 AAGGCAAGGTCTCCATATTTCTCAAAAAAACTCGTTCTTTCTTTGACTCCCAAA
* * **
745018 AAGGCAAGGTCTTCATATTTCTCGAAAAGGCTCGTTCTTTCTTTGACTCCCAAA
1 AAGGCAAGGTCTCCATATTTCTCAAAAAAACTCGTTCTTTCTTTGACTCCCAAA
745072 CTCTTCCATA
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 50 1.00
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.32
Consensus pattern (54 bp):
AAGGCAAGGTCTCCATATTTCTCAAAAAAACTCGTTCTTTCTTTGACTCCCAAA
Found at i:748656 original size:20 final size:20
Alignment explanation
Indices: 748628--748665 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
748618 TTGGATCACA
748628 TACTCCTTTATTTTGTCATG
1 TACTCCTTTATTTTGTCATG
*
748648 TACTTCTTTATTTTGTCA
1 TACTCCTTTATTTTGTCA
748666 AGAGTTTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.16, C:0.18, G:0.08, T:0.58
Consensus pattern (20 bp):
TACTCCTTTATTTTGTCATG
Found at i:750149 original size:19 final size:19
Alignment explanation
Indices: 750078--750150 Score: 58
Period size: 19 Copynumber: 3.8 Consensus size: 19
750068 GAGTCAACCC
* *
750078 GACCTGACCCGTTAACTTT
1 GACCTAACCCGTTGACTTT
* * *
750097 GACTTGACCTGTTGACTTT
1 GACCTAACCCGTTGACTTT
* * *
750116 GCCCCGAA-CCATTGACTTT
1 G-ACCTAACCCGTTGACTTT
750135 GACCTAACCCGTTGAC
1 GACCTAACCCGTTGAC
750151 CGTTGACCGG
Statistics
Matches: 40, Mismatches: 12, Indels: 4
0.71 0.21 0.07
Matches are distributed among these distances:
18 4 0.10
19 34 0.85
20 2 0.05
ACGTcount: A:0.21, C:0.32, G:0.18, T:0.30
Consensus pattern (19 bp):
GACCTAACCCGTTGACTTT
Found at i:755142 original size:23 final size:23
Alignment explanation
Indices: 755113--755166 Score: 74
Period size: 22 Copynumber: 2.4 Consensus size: 23
755103 TTGACCTGAC
*
755113 CCGTTGACTTTTGATCGGTCTAA
1 CCGTTGACTTTTGACCGGTCTAA
* *
755136 CTGTTGAC-TTTGACCGGTCTGA
1 CCGTTGACTTTTGACCGGTCTAA
755158 CCGTTGACT
1 CCGTTGACT
755167 GTTAACTTTG
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
22 19 0.73
23 7 0.27
ACGTcount: A:0.15, C:0.24, G:0.24, T:0.37
Consensus pattern (23 bp):
CCGTTGACTTTTGACCGGTCTAA
Found at i:757888 original size:18 final size:19
Alignment explanation
Indices: 757855--757894 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
757845 TTTCATATCT
* *
757855 TAATATTTATTTAATATAA
1 TAATACTTATTTAATAAAA
757874 TAATACTTA-TTAATAAAA
1 TAATACTTATTTAATAAAA
757892 TAA
1 TAA
757895 AAAAGTAACT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 11 0.58
19 8 0.42
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (19 bp):
TAATACTTATTTAATAAAA
Found at i:758019 original size:30 final size:30
Alignment explanation
Indices: 757944--758021 Score: 97
Period size: 30 Copynumber: 2.6 Consensus size: 30
757934 TAATAATTAC
*
757944 TTAAATAATAATTAATACTAATAAGAGCAA
1 TTAAATAGTAATTAATACTAATAAGAGCAA
*
757974 TTACAT-GATAATTAATACTAATAA-AGCTAA
1 TTAAATAG-TAATTAATACTAATAAGAGC-AA
*
758004 TTAAATAGTAGTTAATAC
1 TTAAATAGTAATTAATAC
758022 AACTATTAAT
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
29 3 0.07
30 37 0.90
31 1 0.02
ACGTcount: A:0.51, C:0.08, G:0.08, T:0.33
Consensus pattern (30 bp):
TTAAATAGTAATTAATACTAATAAGAGCAA
Found at i:758085 original size:35 final size:35
Alignment explanation
Indices: 758046--758151 Score: 149
Period size: 35 Copynumber: 3.0 Consensus size: 35
758036 CTGCTACTAA
*
758046 TAATATAATAAAAATTAAAATAAAAAATCATATTT
1 TAATATAATAAAAATTAAAATAAAAAAGCATATTT
* *
758081 TAATATAATAATAATTAAAATAACAAAGCATATTT
1 TAATATAATAAAAATTAAAATAAAAAAGCATATTT
* * * *
758116 CAATATAATAAAAACTAAAATAACAAAGGATATTT
1 TAATATAATAAAAATTAAAATAAAAAAGCATATTT
758151 T
1 T
758152 TAAAAAAAAC
Statistics
Matches: 63, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 63 1.00
ACGTcount: A:0.59, C:0.06, G:0.03, T:0.32
Consensus pattern (35 bp):
TAATATAATAAAAATTAAAATAAAAAAGCATATTT
Found at i:760417 original size:30 final size:31
Alignment explanation
Indices: 760383--760457 Score: 98
Period size: 33 Copynumber: 2.4 Consensus size: 31
760373 TATATAAACG
760383 AATTTGAGTTAT-CAAAATAATAATAAAATA
1 AATTTGAGTTATACAAAATAATAATAAAATA
* *
760413 AATTTGAGTTATTAATAAAATATTAATAAAATA
1 AATTTGAGTTA-T-ACAAAATAATAATAAAATA
*
760446 AACTTGAGTTAT
1 AATTTGAGTTAT
760458 TAATAAAATA
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
30 11 0.28
31 1 0.03
32 1 0.03
33 26 0.67
ACGTcount: A:0.52, C:0.03, G:0.08, T:0.37
Consensus pattern (31 bp):
AATTTGAGTTATACAAAATAATAATAAAATA
Found at i:760440 original size:33 final size:33
Alignment explanation
Indices: 760396--760468 Score: 128
Period size: 33 Copynumber: 2.2 Consensus size: 33
760386 TTGAGTTATC
*
760396 AAAATAATAATAAAATAAATTTGAGTTATTAAT
1 AAAATAATAATAAAATAAACTTGAGTTATTAAT
*
760429 AAAATATTAATAAAATAAACTTGAGTTATTAAT
1 AAAATAATAATAAAATAAACTTGAGTTATTAAT
760462 AAAATAA
1 AAAATAA
760469 ATCTGAGTTA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
33 37 1.00
ACGTcount: A:0.59, C:0.01, G:0.05, T:0.34
Consensus pattern (33 bp):
AAAATAATAATAAAATAAACTTGAGTTATTAAT
Found at i:760461 original size:22 final size:22
Alignment explanation
Indices: 760433--760484 Score: 88
Period size: 22 Copynumber: 2.4 Consensus size: 22
760423 ATTAATAAAA
760433 TATTAATAAAATAAA-CTTGAGT
1 TATTAATAAAATAAATC-TGAGT
760455 TATTAATAAAATAAATCTGAGT
1 TATTAATAAAATAAATCTGAGT
760477 TATTAATA
1 TATTAATA
760485 GATTCCATGT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
22 28 0.97
23 1 0.03
ACGTcount: A:0.50, C:0.04, G:0.08, T:0.38
Consensus pattern (22 bp):
TATTAATAAAATAAATCTGAGT
Found at i:760607 original size:16 final size:15
Alignment explanation
Indices: 760586--760615 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
760576 ACTAAAATAA
760586 GAGTGATAAGATAGTT
1 GAGTGATAA-ATAGTT
760602 GAGTGATAAATAGT
1 GAGTGATAAATAGT
760616 GTAATTTACC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.40, C:0.00, G:0.30, T:0.30
Consensus pattern (15 bp):
GAGTGATAAATAGTT
Found at i:761251 original size:19 final size:19
Alignment explanation
Indices: 761227--761293 Score: 62
Period size: 23 Copynumber: 3.3 Consensus size: 19
761217 TAATGATAAT
761227 TTAAATATAATAGAAAATA
1 TTAAATATAATAGAAAATA
*
761246 TTAAATATATTAGATATTAAATA
1 TTAAATATAATAG--A--AAATA
* *
761269 TTAAATATGAATATAATATA
1 TTAAATAT-AATAGAAAATA
761289 TTAAA
1 TTAAA
761294 CTTTTATTTA
Statistics
Matches: 39, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
19 12 0.31
20 9 0.23
21 1 0.03
22 1 0.03
23 13 0.33
24 3 0.08
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.39
Consensus pattern (19 bp):
TTAAATATAATAGAAAATA
Found at i:761570 original size:17 final size:18
Alignment explanation
Indices: 761531--761577 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 18
761521 TGTTTCTGAG
761531 GGAATTAAAATCTGTGAA
1 GGAATTAAAATCTGTGAA
* *
761549 GGAATTGAAATCTGT-CA
1 GGAATTAAAATCTGTGAA
*
761566 GGAATTAGAATC
1 GGAATTAAAATC
761578 CAATTTCATA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
17 11 0.44
18 14 0.56
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (18 bp):
GGAATTAAAATCTGTGAA
Found at i:762563 original size:237 final size:232
Alignment explanation
Indices: 762269--762743 Score: 745
Period size: 237 Copynumber: 2.0 Consensus size: 232
762259 ACCCGACCAA
762269 ACCCGACCCGAAATAATAAAAAAATTATTTTTATTCAATAAAAACAGTGACTTAATTGAAAAAAA
1 ACCCGACCCGAAATAATAAAAAAATTATTTTTATTCAATAAAAACAGTGACTTAATTGAAAAAAA
* *
762334 TTATATATAGAGGGGTATTATTGTAATTATTCCTAAATATATAAGGTAAAATTATATATTTTTTG
66 TTATATATAGAGAGGTATTATTGTAATTATTCCTAAATATATAAGGTAAAATTATATA-TATTT-
* * *
762399 GGTCTGGTCGGGTCGAGTATTTTTCACCCTAAACCTGAACCCGACCCGACTCAAATATCACACTT
129 --TCGGGTCGGGTCGAGTATTTTTCACCCTAAACCCGAACCCGACCCGACCCAAATATCACACTT
** *
762464 AAAAAAAAACCGACCCGCCCCGACCAAATTAAAGTTTCACCCG
192 --AAAAAAACCGACCCAACCCGACCAAAATAAAGTTTCACCCG
762507 ACCCGACCCGAAATAATAAAAAAA-TATTTTTATTCAATAAAAACAGTGACTTAATTGAAAAAAA
1 ACCCGACCCGAAATAATAAAAAAATTATTTTTATTCAATAAAAACAGTGACTTAATTGAAAAAAA
*
762571 TTATATATAGAGAGGTATTATTGTAATTATTCCTAAATATATAAGGTAAAGTTATATATATTTTC
66 TTATATATAGAGAGGTATTATTGTAATTATTCCTAAATATATAAGGTAAAATTATATATATTTTC
* ** *
762636 GGGTCGGGTCGGGTATTTTTCACCCTAAACCCGAACTTGACCCGACCCGAATATCACACTTAAAA
131 GGGTCGGGTCGAGTATTTTTCACCCTAAACCCGAACCCGACCCGACCCAAATATCACACTTAAAA
* * *
762701 AAACTGACTCAACCTGACCAAAATAAAGTTTCACCCG
196 AAACCGACCCAACCCGACCAAAATAAAGTTTCACCCG
762738 ACCCGA
1 ACCCGA
762744 ATATATGAAT
Statistics
Matches: 221, Mismatches: 16, Indels: 7
0.91 0.07 0.03
Matches are distributed among these distances:
231 41 0.19
233 56 0.25
236 4 0.02
237 96 0.43
238 24 0.11
ACGTcount: A:0.39, C:0.19, G:0.13, T:0.29
Consensus pattern (232 bp):
ACCCGACCCGAAATAATAAAAAAATTATTTTTATTCAATAAAAACAGTGACTTAATTGAAAAAAA
TTATATATAGAGAGGTATTATTGTAATTATTCCTAAATATATAAGGTAAAATTATATATATTTTC
GGGTCGGGTCGAGTATTTTTCACCCTAAACCCGAACCCGACCCGACCCAAATATCACACTTAAAA
AAACCGACCCAACCCGACCAAAATAAAGTTTCACCCG
Found at i:762574 original size:278 final size:277
Alignment explanation
Indices: 761987--762530 Score: 704
Period size: 285 Copynumber: 1.9 Consensus size: 277
761977 AAACCCGACC
761987 CGACCCGAAATAATAAAAAAATTATTTTTATTCAATAAAAACAATGACTTAATTGAAAAAAATAT
1 CGACCCGAAATAATAAAAAAATTATTTTTATTCAATAAAAACAATGACTTAATTGAAAAAAATAT
762052 ATATAGAGGGATATTATTGTAATTATTTCTAAATATATAAATATATAAGGTAAAATTATATATTT
66 ATATAGAGGGATATTATTGTAATTATTTC-----A-ATAAATATATAAGGTAAAATTATATATTT
* * *
762117 TTTGGTTTGGTTTGGGTTGGGTCGGGTATTTTTCACCCTAAACCCGAACCCGACCCGACTATCAC
125 TTTGG--TGGTCTGGGTCGGGTCGAGTATTTTTCACCCTAAACCCGAACCCGACCCGACTATCAC
* * ** **
762182 ACTTCAAAAAAACCAACCCGACTCGACCAAAATAAAGTTTCACCCGACCCTTCCCGACCCGAATA
188 ACTTAAAAAAAACCAACCCGACCCGACCAAAATAAAGTTTCACCCGACCCGACCCGACAAGAATA
* ** * **
762247 TATGAAATTGAAACCCGACCAAACC
253 AAAAAAATTGAAACCCGAACAAAAA
*
762272 CGACCCGAAATAATAAAAAAATTATTTTTATTCAATAAAAACAGTGACTTAATTGAAAAAAATTA
1 CGACCCGAAATAATAAAAAAATTATTTTTATTCAATAAAAACAATGACTTAATTGAAAAAAA-TA
* *
762337 TATATAGAGGGGTATTATTGTAATTA-TTC-CTAAATATATAAGGTAAAATTATATATTTTTT-G
65 TATATAGAGGGATATTATTGTAATTATTTCAATAAATATATAAGGTAAAATTATATATTTTTTGG
*
762399 -GGTCT-GGTCGGGTCGAGTATTTTTCACCCTAAACCTGAACCCGACCCGACTCAAATATCACAC
130 TGGTCTGGGTCGGGTCGAGTATTTTTCACCCTAAACCCGAACCCGACCCGA--C---TATCACAC
* * * *
762462 TTAAAAAAAAACCGACCCGCCCCGACCAAATTAAAGTTTCACCCGACCCGACCCGA-AATAATAA
190 TT-AAAAAAAACCAACCCGACCCGACCAAAATAAAGTTTCACCCGACCCGACCCGACAAGAATAA
762526 AAAAA
254 AAAAA
762531 TATTTTTATT
Statistics
Matches: 232, Mismatches: 20, Indels: 21
0.85 0.07 0.08
Matches are distributed among these distances:
273 41 0.18
274 4 0.02
275 1 0.00
277 1 0.00
278 48 0.21
279 46 0.20
285 64 0.28
286 27 0.12
ACGTcount: A:0.40, C:0.19, G:0.13, T:0.28
Consensus pattern (277 bp):
CGACCCGAAATAATAAAAAAATTATTTTTATTCAATAAAAACAATGACTTAATTGAAAAAAATAT
ATATAGAGGGATATTATTGTAATTATTTCAATAAATATATAAGGTAAAATTATATATTTTTTGGT
GGTCTGGGTCGGGTCGAGTATTTTTCACCCTAAACCCGAACCCGACCCGACTATCACACTTAAAA
AAAACCAACCCGACCCGACCAAAATAAAGTTTCACCCGACCCGACCCGACAAGAATAAAAAAAAT
TGAAACCCGAACAAAAA
Found at i:766819 original size:26 final size:27
Alignment explanation
Indices: 766790--766844 Score: 69
Period size: 26 Copynumber: 2.1 Consensus size: 27
766780 ACCGAATCAA
*
766790 AAAAATGAAGCC-TTTAAA-CCGAACCG
1 AAAAATGAA-CCGTTTAAAGCCAAACCG
*
766816 AAAACTGAACCGTTTAAAGCCAAACCG
1 AAAAATGAACCGTTTAAAGCCAAACCG
766843 AA
1 AA
766845 CCGAACCGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 2 0.08
26 14 0.56
27 9 0.36
ACGTcount: A:0.47, C:0.24, G:0.15, T:0.15
Consensus pattern (27 bp):
AAAAATGAACCGTTTAAAGCCAAACCG
Found at i:766819 original size:27 final size:27
Alignment explanation
Indices: 766779--766844 Score: 64
Period size: 27 Copynumber: 2.4 Consensus size: 27
766769 ACCCGAACCG
* *
766779 AACCGAATCAAAAAAATGAAGCC-TTTA
1 AACCGAACCGAAAAAATGAA-CCGTTTA
*
766806 AACCGAACCG-AAAACTGAACCGTTTA
1 AACCGAACCGAAAAAATGAACCGTTTA
*
766832 AAGCCAAACCGAA
1 AA-CCGAACCGAA
766845 CCGAACCGAA
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
25 2 0.06
26 14 0.44
27 15 0.47
28 1 0.03
ACGTcount: A:0.48, C:0.24, G:0.14, T:0.14
Consensus pattern (27 bp):
AACCGAACCGAAAAAATGAACCGTTTA
Found at i:767009 original size:10 final size:10
Alignment explanation
Indices: 766979--767027 Score: 53
Period size: 10 Copynumber: 4.8 Consensus size: 10
766969 GTTTGATGCT
*
766979 TTCTTTTTGA
1 TTCTTGTTGA
*
766989 TTCTCTCTTGA
1 TTCT-TGTTGA
767000 TTCTTGTTGA
1 TTCTTGTTGA
*
767010 TTGTTGTTGA
1 TTCTTGTTGA
*
767020 TTATTGTT
1 TTCTTGTT
767028 TCTTGTTATT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
10 25 0.74
11 9 0.26
ACGTcount: A:0.10, C:0.10, G:0.16, T:0.63
Consensus pattern (10 bp):
TTCTTGTTGA
Found at i:767033 original size:20 final size:20
Alignment explanation
Indices: 766996--767040 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
766986 TGATTCTCTC
* *
766996 TTGATTCTTGTTGATTGTTG
1 TTGATTATTGTTGATTGTTA
**
767016 TTGATTATTGTTTCTTGTTA
1 TTGATTATTGTTGATTGTTA
767036 TTGAT
1 TTGAT
767041 CAATGGCTTC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.13, C:0.04, G:0.20, T:0.62
Consensus pattern (20 bp):
TTGATTATTGTTGATTGTTA
Found at i:767321 original size:64 final size:64
Alignment explanation
Indices: 767253--767412 Score: 200
Period size: 65 Copynumber: 2.5 Consensus size: 64
767243 TTCACTAAGA
* *
767253 GTGCATCGATGCATCAAGTGCATTCGATGTTTCA-AAATAGCCAGAGTGCATCGATGCAT-G-AC
1 GTGCATCGATGCATCAAATGCATTCGATGTTTCATAAA-AGCCACAGTGCATCGATGCATGGTA-
767315 T
64 T
* * *
767316 GGTGCATCGATGCATCAAATGCATTCGATGTTTTCATAAAATCCTCAGTGCGTCGATGCATGGTA
1 -GTGCATCGATGCATCAAATGCATTCGATG-TTTCATAAAAGCCACAGTGCATCGATGCATGGTA
767381 T
64 T
* *
767382 GCGCATCGATGCATGAAATGCATTCGATGTT
1 GTGCATCGATGCATCAAATGCATTCGATGTT
767413 CAATTTAATT
Statistics
Matches: 85, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
64 30 0.35
65 49 0.58
66 5 0.06
67 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (64 bp):
GTGCATCGATGCATCAAATGCATTCGATGTTTCATAAAAGCCACAGTGCATCGATGCATGGTAT
Found at i:767453 original size:65 final size:64
Alignment explanation
Indices: 767253--767453 Score: 187
Period size: 65 Copynumber: 3.1 Consensus size: 64
767243 TTCACTAAGA
* * **
767253 GTGCATCGATGCATCAAGTGCATTCGATGTTTCAAAAT-AGCCAGAGTGCATCGATGCATGA-CT
1 GTGCATCGATGCATCAAATGCATTCGATGTTTCAATATAATTCAG-GTGCATCGATGCATGATC-
767316 G
64 G
* * *
767317 GTGCATCGATGCATCAAATGCATTCGATGTTTTC-ATAAAATCCTCA-GTGCGTCGATGCATGGT
1 GTGCATCGATGCATCAAATGCATTCGATG-TTTCAATATAAT--TCAGGTGCATCGATGCATGAT
**
767380 AT
63 CG
* * * *
767382 GCGCATCGATGCATGAAATGCATTCGATG-TTCAATTTAATTCATGGTGCTTCGATGCATGCATC
1 GTGCATCGATGCATCAAATGCATTCGATGTTTCAATATAATTCA-GGTGCATCGATGCATG-ATC
767446 G
64 G
767447 GTGCATC
1 GTGCATC
767454 ACTTTGATAA
Statistics
Matches: 110, Mismatches: 18, Indels: 17
0.76 0.12 0.12
Matches are distributed among these distances:
62 3 0.03
63 3 0.03
64 49 0.45
65 53 0.48
67 2 0.02
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.30
Consensus pattern (64 bp):
GTGCATCGATGCATCAAATGCATTCGATGTTTCAATATAATTCAGGTGCATCGATGCATGATCG
Found at i:769959 original size:23 final size:22
Alignment explanation
Indices: 769929--770008 Score: 81
Period size: 22 Copynumber: 3.6 Consensus size: 22
769919 GCATGGCCTT
* *
769929 GTGCATCGATGCACATACAAGG
1 GTGCATCGATGCACATTCAAAG
* * *
769951 CGTGCATCGGTGCACCTTC-ATG
1 -GTGCATCGATGCACATTCAAAG
*
769973 GTGTATCGATGCACATTCAAAG
1 GTGCATCGATGCACATTCAAAG
*
769995 ATGCATCGATGCAC
1 GTGCATCGATGCAC
770009 TGTTAGGTGT
Statistics
Matches: 46, Mismatches: 10, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
21 15 0.33
22 16 0.35
23 15 0.33
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.24
Consensus pattern (22 bp):
GTGCATCGATGCACATTCAAAG
Found at i:769983 original size:44 final size:42
Alignment explanation
Indices: 769907--770027 Score: 111
Period size: 43 Copynumber: 2.8 Consensus size: 42
769897 AAAACCCGAT
* ** *
769907 AGATGCATCGATGCA-TGGCCTTGTGCATCGATGCACATACAA
1 AGATGCATCGATGCACT-GTCAGGTGTATCGATGCACATACAA
* * * *
769949 GGCGTGCATCGGTGCACCT-TCATGGTGTATCGATGCACATTCAA
1 AG-ATGCATCGATGCA-CTGTCA-GGTGTATCGATGCACATACAA
*
769993 AGATGCATCGATGCACTGTTAGGTGTATCGATGCA
1 AGATGCATCGATGCACTGTCAGGTGTATCGATGCA
770028 TGAAGCACAA
Statistics
Matches: 62, Mismatches: 12, Indels: 10
0.74 0.14 0.12
Matches are distributed among these distances:
42 17 0.27
43 25 0.40
44 19 0.31
45 1 0.02
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.26
Consensus pattern (42 bp):
AGATGCATCGATGCACTGTCAGGTGTATCGATGCACATACAA
Found at i:773744 original size:29 final size:29
Alignment explanation
Indices: 773674--773732 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
773664 TTTGATGATC
773674 ATCACTGACTTTTGAAAGTAAATTTTGCA
1 ATCACTGACTTTTGAAAGTAAATTTTGCA
773703 ATCACTGACTTTTGAAAGTAAATTTTGCA
1 ATCACTGACTTTTGAAAGTAAATTTTGCA
773732 A
1 A
773733 ATCCGAATTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.37
Consensus pattern (29 bp):
ATCACTGACTTTTGAAAGTAAATTTTGCA
Found at i:778347 original size:36 final size:37
Alignment explanation
Indices: 778294--778391 Score: 164
Period size: 37 Copynumber: 2.7 Consensus size: 37
778284 AATTACATCC
778294 ACTTTAGC-TTAGGTAAAAGCTTAAACGTAATATG-A
1 ACTTTAGCTTTAGGTAAAAGCTTAAACGTAATATGAA
* *
778329 ACTTTAGCTTTAGGTAAAAGTTTAAATGTAATATGAA
1 ACTTTAGCTTTAGGTAAAAGCTTAAACGTAATATGAA
778366 ACTTTAGCTTTAGGTAAAAGCTTAAA
1 ACTTTAGCTTTAGGTAAAAGCTTAAA
778392 TTTATATGAA
Statistics
Matches: 58, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
35 8 0.14
36 24 0.41
37 26 0.45
ACGTcount: A:0.40, C:0.09, G:0.16, T:0.35
Consensus pattern (37 bp):
ACTTTAGCTTTAGGTAAAAGCTTAAACGTAATATGAA
Found at i:778378 original size:37 final size:37
Alignment explanation
Indices: 778294--778401 Score: 168
Period size: 36 Copynumber: 3.0 Consensus size: 37
778284 AATTACATCC
*
778294 ACTTTAGC-TTAGGTAAAAGCTTAAACGTAATATG-A
1 ACTTTAGCTTTAGGTAAAAGCTTAAATGTAATATGAA
*
778329 ACTTTAGCTTTAGGTAAAAGTTTAAATGTAATATGAA
1 ACTTTAGCTTTAGGTAAAAGCTTAAATGTAATATGAA
*
778366 ACTTTAGCTTTAGGTAAAAGCTTAAAT-TTATATGAA
1 ACTTTAGCTTTAGGTAAAAGCTTAAATGTAATATGAA
778402 TCTAGTTTCT
Statistics
Matches: 67, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
35 8 0.12
36 32 0.48
37 27 0.40
ACGTcount: A:0.40, C:0.08, G:0.16, T:0.36
Consensus pattern (37 bp):
ACTTTAGCTTTAGGTAAAAGCTTAAATGTAATATGAA
Found at i:784248 original size:21 final size:21
Alignment explanation
Indices: 784205--784249 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
784195 TATCGCATTA
**
784205 CGATTTTCCAAATTCGCGTTG
1 CGATTTTCCAAATTCGCAATG
*
784226 CGATTTTCCTAATTCGCAATG
1 CGATTTTCCAAATTCGCAATG
784247 CGA
1 CGA
784250 ATACGTAAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.36
Consensus pattern (21 bp):
CGATTTTCCAAATTCGCAATG
Found at i:784264 original size:20 final size:20
Alignment explanation
Indices: 784239--784349 Score: 204
Period size: 20 Copynumber: 5.5 Consensus size: 20
784229 TTTTCCTAAT
784239 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
784259 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
784279 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
784299 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
*
784319 TCGCAATGTGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
*
784339 TCGCAACGCGA
1 TCGCAATGCGA
784350 TTCTGACTAT
Statistics
Matches: 88, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 88 1.00
ACGTcount: A:0.39, C:0.21, G:0.21, T:0.20
Consensus pattern (20 bp):
TCGCAATGCGAATACGTAAA
Found at i:784361 original size:20 final size:20
Alignment explanation
Indices: 784338--784424 Score: 156
Period size: 20 Copynumber: 4.3 Consensus size: 20
784328 GAATACGTAA
*
784338 ATCGCAACGCGATTCTGACT
1 ATCGCAACGAGATTCTGACT
784358 ATCGCAACGAGATTCTGACT
1 ATCGCAACGAGATTCTGACT
784378 ATCGCAACGAGATTCTGACT
1 ATCGCAACGAGATTCTGACT
*
784398 ATCGCAACGCGATTCTGACT
1 ATCGCAACGAGATTCTGACT
784418 ATCGCAA
1 ATCGCAA
784425 TACTGAATTT
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 65 1.00
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.24
Consensus pattern (20 bp):
ATCGCAACGAGATTCTGACT
Found at i:784463 original size:60 final size:59
Alignment explanation
Indices: 784335--784463 Score: 131
Period size: 60 Copynumber: 2.2 Consensus size: 59
784325 TGTGAATACG
* *
784335 TAAA-TCGCAACGCGATTCTGACTATCGCAACGAGATTCTGACTATCGCAACGAGATTC
1 TAAATTCGCAACGCGATTCTGACTATCGCAACGAGATTCTAAATATCGCAACGAGATTC
* * **
784393 TGACTATCGCAACGCGATTCTGACTATCGCAATACTGA-ATT-TCAAAT-TCGCAACTCGATTC
1 TAAAT-TCGCAACGCGATTCTGACTATCGC-A-AC-GAGATTCT-AAATATCGCAACGAGATTC
784454 TAAATTCGCA
1 TAAATTCGCA
784464 CAGGTTTTAG
Statistics
Matches: 57, Mismatches: 8, Indels: 10
0.76 0.11 0.13
Matches are distributed among these distances:
58 2 0.04
60 29 0.51
61 17 0.30
62 7 0.12
63 2 0.04
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (59 bp):
TAAATTCGCAACGCGATTCTGACTATCGCAACGAGATTCTAAATATCGCAACGAGATTC
Found at i:786468 original size:20 final size:20
Alignment explanation
Indices: 786443--786531 Score: 126
Period size: 20 Copynumber: 4.5 Consensus size: 20
786433 CAACATGGAA
786443 ATCGCAACGC-GAATATGACT
1 ATCGCAACGCGGAA-ATGACT
*
786463 ATCGCAACACGGAAATGACT
1 ATCGCAACGCGGAAATGACT
*
786483 ATCACAACGCGGAAATGACT
1 ATCGCAACGCGGAAATGACT
*
786503 ATCGCAACACGGAAATGACT
1 ATCGCAACGCGGAAATGACT
*
786523 ATTGCAACG
1 ATCGCAACG
786532 AGAGAATCGC
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
20 58 0.95
21 3 0.05
ACGTcount: A:0.38, C:0.25, G:0.20, T:0.17
Consensus pattern (20 bp):
ATCGCAACGCGGAAATGACT
Found at i:786531 original size:40 final size:40
Alignment explanation
Indices: 786443--786531 Score: 144
Period size: 40 Copynumber: 2.2 Consensus size: 40
786433 CAACATGGAA
786443 ATCGCAACGCGAATATGACTATCGCAACACGGAAATGACT
1 ATCGCAACGCGAATATGACTATCGCAACACGGAAATGACT
*
786483 ATCACAACGCGGAA-ATGACTATCGCAACACGGAAATGACT
1 ATCGCAACGC-GAATATGACTATCGCAACACGGAAATGACT
*
786523 ATTGCAACG
1 ATCGCAACG
786532 AGAGAATCGC
Statistics
Matches: 45, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
40 42 0.93
41 3 0.07
ACGTcount: A:0.38, C:0.25, G:0.20, T:0.17
Consensus pattern (40 bp):
ATCGCAACGCGAATATGACTATCGCAACACGGAAATGACT
Found at i:786573 original size:20 final size:20
Alignment explanation
Indices: 786536--786588 Score: 90
Period size: 20 Copynumber: 2.7 Consensus size: 20
786526 GCAACGAGAG
786536 AATCGCAATGCG-AAATGAA
1 AATCGCAATGCGAAAATGAA
786555 AATCGCAATGCGAAAATGAA
1 AATCGCAATGCGAAAATGAA
*
786575 AATCGCAACGCGAA
1 AATCGCAATGCGAA
786589 TTTAGTTTCG
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
19 12 0.38
20 20 0.62
ACGTcount: A:0.47, C:0.19, G:0.21, T:0.13
Consensus pattern (20 bp):
AATCGCAATGCGAAAATGAA
Found at i:786785 original size:14 final size:14
Alignment explanation
Indices: 786766--786802 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
786756 CATCAATTAA
786766 ACAAATCAACATTT
1 ACAAATCAACATTT
* *
786780 ACAAATCATCTTTT
1 ACAAATCAACATTT
786794 ACAAATCAA
1 ACAAATCAA
786803 TTAAACAATC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.49, C:0.22, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACATTT
Found at i:788238 original size:40 final size:41
Alignment explanation
Indices: 788175--788255 Score: 110
Period size: 40 Copynumber: 2.0 Consensus size: 41
788165 TCTAGAATGT
*
788175 TGGGAGGGACCTCTTCAACGATGACAGTGGCCTCTTGAACG
1 TGGGAGGGACCTCTTCAACGATGACAGGGGCCTCTTGAACG
* ** *
788216 TGGGAGGGA-CTCTTGAGGGATGATAGGGGCCTCTTGAACG
1 TGGGAGGGACCTCTTCAACGATGACAGGGGCCTCTTGAACG
788256 ATGACAGGTG
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
40 26 0.74
41 9 0.26
ACGTcount: A:0.21, C:0.20, G:0.37, T:0.22
Consensus pattern (41 bp):
TGGGAGGGACCTCTTCAACGATGACAGGGGCCTCTTGAACG
Found at i:788258 original size:21 final size:21
Alignment explanation
Indices: 788179--788263 Score: 75
Period size: 21 Copynumber: 4.1 Consensus size: 21
788169 GAATGTTGGG
* *
788179 AGGGACCTCTTCAACGATGAC
1 AGGGGCCTCTTGAACGATGAC
* **
788200 AGTGGCCTCTTGAACG-TGGG
1 AGGGGCCTCTTGAACGATGAC
* ** *
788220 A-GGGACTCTTGAGGGATGAT
1 AGGGGCCTCTTGAACGATGAC
788240 AGGGGCCTCTTGAACGATGAC
1 AGGGGCCTCTTGAACGATGAC
788261 AGG
1 AGG
788264 TGAGTCAGGC
Statistics
Matches: 47, Mismatches: 15, Indels: 4
0.71 0.23 0.06
Matches are distributed among these distances:
19 10 0.21
20 6 0.13
21 31 0.66
ACGTcount: A:0.24, C:0.20, G:0.35, T:0.21
Consensus pattern (21 bp):
AGGGGCCTCTTGAACGATGAC
Found at i:788769 original size:20 final size:20
Alignment explanation
Indices: 788746--788834 Score: 124
Period size: 20 Copynumber: 4.5 Consensus size: 20
788736 GAAACTTAAA
788746 ATCGCAACGCGAAAATGACT
1 ATCGCAACGCGAAAATGACT
*
788766 ATCGCAACGCGAAAATGATT
1 ATCGCAACGCGAAAATGACT
*
788786 ATCGCAATGCGAAAATGACT
1 ATCGCAACGCGAAAATGACT
* **
788806 ATCGCAATGCGAATTTGACT
1 ATCGCAACGCGAAAATGACT
*
788826 ATTGCAACG
1 ATCGCAACG
788835 AGAGAATCGC
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 62 1.00
ACGTcount: A:0.37, C:0.21, G:0.20, T:0.21
Consensus pattern (20 bp):
ATCGCAACGCGAAAATGACT
Found at i:788904 original size:53 final size:53
Alignment explanation
Indices: 788841--788959 Score: 125
Period size: 53 Copynumber: 2.2 Consensus size: 53
788831 AACGAGAGAA
* * *
788841 TCGCAATGCGATTTTCA-TTTCGAATTGCGATTCTT-TCGTTGCGATAGTCATTT
1 TCGCATTGCGATTGTCATTTTCGAATTCCGATT-TTGTCGTTGCGATAGTCA-TT
* ** * **
788894 TCGCATTGCGATAGTCATTTTCGCGTTCCGATTTTGTTGTTGCGATTTTCATT
1 TCGCATTGCGATTGTCATTTTCGAATTCCGATTTTGTCGTTGCGATAGTCATT
788947 TCGCATTGCGATT
1 TCGCATTGCGATT
788960 CTCTCGTTGC
Statistics
Matches: 54, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
53 30 0.56
54 24 0.44
ACGTcount: A:0.16, C:0.19, G:0.20, T:0.45
Consensus pattern (53 bp):
TCGCATTGCGATTGTCATTTTCGAATTCCGATTTTGTCGTTGCGATAGTCATT
Found at i:788925 original size:20 final size:20
Alignment explanation
Indices: 788877--788925 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
788867 GCGATTCTTT
788877 CGTTGCGATAGTCATTTTCG
1 CGTTGCGATAGTCATTTTCG
*
788897 CATTGCGATAGTCATTTTCG
1 CGTTGCGATAGTCATTTTCG
*
788917 CGTTCCGAT
1 CGTTGCGAT
788926 TTTGTTGTTG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.16, C:0.22, G:0.22, T:0.39
Consensus pattern (20 bp):
CGTTGCGATAGTCATTTTCG
Found at i:788992 original size:34 final size:34
Alignment explanation
Indices: 788899--788992 Score: 109
Period size: 33 Copynumber: 2.8 Consensus size: 34
788889 CATTTTCGCA
* * * * *
788899 TTGCGATAGTCATTTTCGCGTTCCGATTTTGTTG
1 TTGCGATAGTCATTTTCGCATTGCGATTCTCTCG
**
788933 TTGCGATTTTCA-TTTCGCATTGCGATTCTCTCG
1 TTGCGATAGTCATTTTCGCATTGCGATTCTCTCG
*
788966 TTGCGATAGTCATTTTTGCATTGCGAT
1 TTGCGATAGTCATTTTCGCATTGCGAT
788993 AGTAAACTAT
Statistics
Matches: 49, Mismatches: 10, Indels: 2
0.80 0.16 0.03
Matches are distributed among these distances:
33 26 0.53
34 23 0.47
ACGTcount: A:0.14, C:0.19, G:0.21, T:0.46
Consensus pattern (34 bp):
TTGCGATAGTCATTTTCGCATTGCGATTCTCTCG
Found at i:790936 original size:20 final size:20
Alignment explanation
Indices: 790878--790947 Score: 86
Period size: 20 Copynumber: 3.5 Consensus size: 20
790868 GAAACTTAAA
* **
790878 ATCGCAACACGAAAATGAAA
1 ATCGCAACGCGAAAATGACT
*
790898 ATCGCAACACGAAAATGACT
1 ATCGCAACGCGAAAATGACT
**
790918 ATCGCAACGCGAATTTGACT
1 ATCGCAACGCGAAAATGACT
790938 ATCGCAACGC
1 ATCGCAACGC
790948 AAGAATCGCA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 45 1.00
ACGTcount: A:0.41, C:0.26, G:0.17, T:0.16
Consensus pattern (20 bp):
ATCGCAACGCGAAAATGACT
Done.