genome.fa.s4124.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004124.1 Hibiscus syriacus cultivar Beakdansim tig00009024_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  194143

Tables:   1   

This is table  1  of  1  ( 96 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--15002	7	2188.3	7	94	5	23994	40	43	1	13	1.54
14158--14231	38	1.9	38	86	5	105	10	63	22	2	1.39
17331--17522	42	4.6	42	86	5	264	35	23	17	22	1.95
17334--17537	21	9.8	20	69	16	96	35	24	17	22	1.95
20270--22515	10	226.7	10	73	10	1183	43	29	5	21	1.76
28731--29152	39	11.0	39	70	12	205	38	7	10	43	1.68
28735--29153	79	5.5	78	75	9	326	38	7	10	43	1.68
28850--29153	118	2.6	112	77	12	278	38	7	9	44	1.67
28775--29015	78	3.1	78	80	6	235	35	8	12	43	1.72
28760--29152	152	2.6	153	75	14	391	38	7	10	42	1.69
29213--29356	39	3.7	39	71	12	116	40	7	9	42	1.66
29218--29428	77	2.8	78	78	8	186	40	6	9	44	1.62
34213--34238	13	2.0	13	100	0	52	23	7	30	38	1.83
34235--34353	60	2.0	60	88	3	177	27	12	39	20	1.88
41703--41785	36	2.6	30	72	20	85	18	33	13	34	1.89
44451--44496	14	3.2	15	77	17	53	43	0	0	56	0.99
47845--47891	22	2.1	23	88	4	69	44	2	0	53	1.12
48265--48867	221	2.7	223	84	5	756	34	14	12	38	1.84
49161--49199	18	2.1	19	85	9	53	71	0	5	23	1.05
52499--52576	23	3.3	23	69	15	70	33	25	19	21	1.97
52825--52888	31	2.1	31	91	2	103	35	21	4	37	1.75
61936--61981	19	2.3	21	85	7	60	10	0	8	80	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63608--63679	24	3.0	24	67	16	60	31	22	22	23	1.98
63693--63744	22	2.4	22	80	6	52	42	19	9	28	1.82
63937--64000	31	2.1	31	91	2	103	34	23	4	37	1.76
65354--66084	199	3.6	198	79	8	739	31	15	13	39	1.86
68616--69177	200	2.8	200	88	2	851	31	17	14	37	1.89
68920--69410	251	2.0	250	85	4	677	31	16	14	37	1.89
71958--72486	201	2.6	202	95	0	945	32	15	13	37	1.88
72761--72809	19	2.6	19	96	0	89	57	8	0	34	1.29
74593--74658	33	2.0	33	90	0	105	24	45	0	30	1.53
74692--74735	21	2.1	21	95	0	79	18	29	11	40	1.85
75507--76337	412	2.0	413	95	0	1511	28	24	10	36	1.89
77348--77393	20	2.3	19	78	10	56	21	17	8	52	1.71
77370--77687	162	2.0	162	91	1	512	31	16	11	40	1.84
102237--102323	22	3.9	22	78	21	85	77	3	18	1	0.98
102235--102306	22	3.1	25	78	15	91	75	4	20	0	0.97
102223--102301	26	3.0	27	80	15	94	74	3	21	0	0.97
102252--102326	19	3.8	19	75	7	60	77	4	17	1	0.99
103706--103854	55	2.6	57	76	6	142	38	22	13	26	1.91
103880--103961	43	1.9	43	87	0	119	28	30	18	23	1.97
103923--104438	240	2.1	242	87	1	730	34	22	17	26	1.96
105538--105595	20	2.7	20	81	10	62	29	20	24	25	1.99
109660--109717	20	2.7	20	81	10	62	29	20	24	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110484--110516	2	16.5	2	100	0	66	0	0	48	51	1.00
111203--111361	37	4.4	36	75	8	162	25	19	13	41	1.88
111415--111496	34	2.4	34	90	6	123	41	20	7	30	1.80
112695--112748	26	2.1	25	83	13	65	18	14	5	61	1.52
113999--114041	18	2.5	17	85	7	61	25	4	2	67	1.22
113998--114141	12	12.1	12	70	22	58	33	4	1	61	1.24
114094--114120	2	13.5	2	100	0	54	48	0	0	51	1.00
115709--115746	19	2.0	20	89	5	60	7	23	0	68	1.16
119247--119783	183	2.9	183	95	0	959	27	21	20	30	1.98
120940--121053	36	3.2	34	71	9	86	25	16	14	43	1.85
120924--121085	72	2.2	76	85	8	219	27	19	12	40	1.88
120963--121135	73	2.4	72	80	8	165	27	17	15	39	1.90
121193--121267	39	1.9	39	83	5	98	26	22	13	37	1.91
121170--121489	106	3.1	105	90	4	499	30	20	11	37	1.89
121389--121464	36	2.1	36	87	0	107	22	19	15	42	1.89
121677--122294	105	5.9	105	91	2	922	33	27	17	21	1.96
122837--122941	37	2.8	37	79	0	120	42	13	13	30	1.82
123848--123891	2	22.0	2	100	0	88	50	0	0	50	1.00
128964--129007	15	2.9	15	89	0	61	9	13	63	13	1.51
131795--131819	2	12.5	2	100	0	50	52	48	0	0	1.00
134446--134997	275	2.0	275	98	0	1068	24	18	23	33	1.97
135831--135877	24	2.0	24	91	0	76	6	10	21	61	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
138647--138688	20	2.0	21	90	4	68	35	14	9	40	1.78
142488--142524	11	3.3	11	85	7	56	27	29	18	24	1.98
142911--143056	45	3.3	44	86	6	213	35	21	5	37	1.77
143318--144052	59	12.4	59	89	1	990	29	22	10	37	1.88
143160--144052	118	7.5	118	84	4	1007	29	21	11	37	1.88
143548--143646	31	3.3	31	64	18	82	28	23	11	37	1.89
144386--144438	20	2.7	20	96	0	97	24	28	20	26	1.99
147364--147405	20	2.0	21	90	4	68	40	9	14	35	1.78
148726--148766	21	2.0	21	95	0	73	41	14	12	31	1.83
153519--153562	21	2.1	21	91	8	72	27	29	6	36	1.83
157477--157532	14	4.3	14	76	17	66	10	12	23	53	1.69
157484--157553	24	2.9	24	87	4	97	12	10	18	58	1.62
158277--158351	10	7.7	10	69	21	61	9	12	21	57	1.62
158283--158347	16	4.1	16	95	0	121	7	12	23	56	1.61
158417--158449	16	2.1	16	100	0	66	6	12	24	57	1.57
158594--158635	20	2.1	20	100	0	84	26	16	42	14	1.86
160341--160430	23	3.9	23	80	8	103	62	20	7	10	1.51
162419--162449	7	4.4	7	100	0	62	41	0	58	0	0.98
174444--174504	27	2.2	28	94	5	115	34	13	13	39	1.83
174652--174700	22	2.2	21	79	10	53	55	10	4	30	1.52
176428--176453	3	8.7	3	100	0	52	69	0	0	30	0.89
186649--186681	2	16.5	2	100	0	66	0	48	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
187802--187847	13	3.3	15	76	17	53	23	0	0	76	0.79
187797--187837	17	2.4	17	84	11	57	19	0	0	80	0.71
187797--187844	22	2.1	24	88	7	73	22	0	0	77	0.78
187802--187857	27	2.1	27	86	0	76	26	0	0	73	0.84
187798--187850	23	2.4	22	81	12	65	24	0	0	75	0.80
187927--188043	49	2.4	50	91	7	195	37	20	12	29	1.90
187927--188043	25	4.8	25	93	5	195	37	20	12	29	1.90
190774--190799	9	2.9	9	100	0	52	11	0	0	88	0.52

Tables:   1

The End!