genome.fa.s4126.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004126.1 Hibiscus syriacus cultivar Beakdansim tig00009027_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60436

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2039--2078	21	1.9	21	85	10	55	35	10	2	52	1.48
3979--4158	63	2.8	63	82	5	209	28	16	25	29	1.97
4106--4144	19	2.1	19	95	0	69	25	15	38	20	1.92
4000--4158	65	2.5	64	87	2	221	28	15	25	30	1.96
4000--4206	65	3.2	64	82	9	199	28	16	24	30	1.97
9500--9537	19	2.0	19	85	10	51	50	2	18	28	1.61
14294--14333	14	2.9	14	88	0	62	17	10	10	62	1.53
23651--23749	21	4.8	20	70	6	63	37	23	18	21	1.94
23717--23949	20	11.6	20	83	4	281	33	26	19	19	1.96
24328--24384	14	3.7	14	70	20	51	8	24	21	45	1.80
24318--24388	33	2.2	33	97	0	133	9	23	18	47	1.78
24316--24366	14	3.0	18	70	24	56	9	23	21	45	1.82
24468--24538	21	3.4	21	80	7	99	45	19	22	12	1.84
25009--25044	14	2.6	14	95	0	63	33	0	22	44	1.53
25151--25249	19	5.4	19	81	14	127	45	16	23	15	1.84
25151--25268	53	2.2	52	92	3	200	44	16	23	14	1.85
25264--25481	53	4.1	52	87	10	302	14	22	17	45	1.85
25264--25467	72	2.8	72	86	7	254	14	22	17	45	1.85
25335--25481	33	4.2	33	77	13	170	14	21	18	45	1.85
27763--27787	12	2.1	12	100	0	50	0	28	0	72	0.86
27962--28008	24	2.0	24	87	8	69	38	21	14	25	1.92
28701--28929	20	11.4	20	85	1	235	19	17	25	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29915--30005	33	2.9	30	79	11	92	39	5	13	41	1.67
29912--30014	33	3.2	32	71	15	79	38	5	11	43	1.65
29915--30026	31	3.5	31	77	6	91	41	6	10	41	1.65
32506--32540	17	2.1	17	89	10	54	37	17	25	20	1.94
33813--33881	24	2.9	24	86	0	93	37	27	15	18	1.92
38278--39212	201	4.7	200	81	4	1052	32	18	20	27	1.96
38240--39211	400	2.4	399	82	3	1163	33	18	20	27	1.96
39969--40022	18	3.4	17	70	29	55	46	5	7	40	1.55
39957--40053	32	3.1	31	82	7	108	42	4	10	43	1.58
39957--40053	33	3.0	32	85	7	110	42	4	10	43	1.58
47762--47793	15	2.1	15	100	0	64	25	34	6	34	1.81
53217--53261	22	2.0	22	95	0	81	26	15	15	42	1.87

Tables:   1

The End!