Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004127.1 Hibiscus syriacus cultivar Beakdansim tig00009028_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41686

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7724--7766
24
1.9
23
86
13
63
39
11
11
37
1.78
7789--7848
24
2.5
24
100
0
120
38
13
10
38
1.78
10709--10741
15
2.3
15
89
5
50
18
6
3
72
1.18
22456--22502
18
2.6
18
93
3
76
36
19
34
10
1.86
27897--27940
22
2.0
22
82
8
54
59
0
0
40
0.98
30377--30928
255
2.1
257
89
4
842
28
10
19
41
1.85
31334--31365
14
2.3
14
100
0
64
34
34
0
31
1.58
37667--37784
57
2.1
57
82
7
141
38
15
11
34
1.82
39632--39726
48
2.0
46
84
10
120
51
5
9
33
1.57
39826--39882
20
2.8
20
78
0
69
40
31
12
15
1.85
39868--39966
20
4.9
20
91
2
155
42
19
20
18
1.90
39851--39966
40
2.9
40
83
5
110
42
21
18
18
1.90
39958--40001
20
2.2
20
87
0
61
34
18
25
22
1.96
39867--39995
60
2.2
60
81
2
152
41
19
20
18
1.90
39867--39995
40
3.2
40
82
2
143
41
19
20
18
1.90
39994--40046
20
2.7
20
90
0
88
28
13
22
35
1.92
40036--40213
57
3.1
57
90
1
277
28
14
20
36
1.92
40219--40259
20
2.0
20
90
0
64
31
9
29
29
1.89

Tables:   1

The End!