genome.fa.s4128.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004128.1 Hibiscus syriacus cultivar Beakdansim tig00009033_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56598

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13745--13867	45	2.7	45	82	7	140	24	16	8	51	1.71
13786--13892	45	2.4	44	81	7	128	26	15	7	50	1.71
13937--13963	2	13.5	2	100	0	54	51	0	0	48	1.00
14417--14925	55	9.3	55	88	3	715	28	19	18	33	1.96
15333--15388	22	2.7	20	76	10	58	26	25	16	32	1.96
15240--15462	94	2.4	95	86	2	297	23	23	17	35	1.95
17986--18066	41	2.0	41	95	0	144	43	17	16	23	1.88
18162--18196	18	1.9	18	100	0	70	40	14	11	34	1.82
29651--29712	15	4.1	15	76	0	52	25	27	40	6	1.80
29645--29709	10	6.5	10	76	0	58	26	27	40	6	1.80
30783--31219	218	2.0	216	98	1	840	27	23	17	32	1.97
44020--44168	36	4.2	36	82	5	176	40	35	11	12	1.80
44011--44168	71	2.2	71	82	3	192	41	34	10	12	1.78
44283--44441	41	3.9	42	75	13	150	32	16	20	30	1.95
44319--44618	162	1.8	164	84	2	408	31	14	20	34	1.92
44317--44663	83	4.2	81	74	2	246	30	14	20	33	1.93
44805--44846	18	2.4	17	88	4	57	11	33	0	54	1.37
46509--46536	13	2.2	13	100	0	56	21	17	0	60	1.36
48005--48081	39	2.0	38	82	7	93	24	23	16	35	1.95
48285--48334	24	2.1	24	84	0	64	32	42	8	18	1.79
51575--51605	15	2.0	16	93	6	55	38	0	0	61	0.96
52097--52184	36	2.4	36	92	0	140	44	28	13	13	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52198--52319	36	3.4	35	78	4	136	37	36	12	13	1.83
52199--52336	36	3.8	36	74	9	95	36	34	11	16	1.85
55098--55123	5	5.2	5	100	0	52	0	19	0	80	0.71

Tables:   1

The End!