Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004129.1 Hibiscus syriacus cultivar Beakdansim tig00009035_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91762

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1620--1684
20
3.0
22
84
13
89
26
21
43
9
1.82
3051--3083
2
16.5
2
100
0
66
48
0
0
51
1.00
8056--8088
6
5.8
6
93
6
52
0
9
0
90
0.44
8056--8089
12
2.8
12
90
0
59
0
8
0
91
0.43
9131--9167
12
3.1
12
92
0
56
40
0
29
29
1.57
10920--10970
7
7.3
7
84
0
57
45
29
0
25
1.54
10920--10970
14
3.6
14
83
0
66
45
29
0
25
1.54
10920--10970
21
2.4
21
86
0
75
45
29
0
25
1.54
11265--11308
14
3.1
14
83
0
52
47
29
2
20
1.62
10990--11704
288
2.5
290
91
2
1139
38
24
6
30
1.81
11888--11928
21
2.0
21
90
9
66
58
4
2
34
1.32
11888--11940
21
2.6
19
83
16
63
58
3
1
35
1.27
12506--12582
30
2.6
30
89
4
111
32
16
14
36
1.89
13974--14008
18
1.9
18
88
11
54
51
0
14
34
1.42
25927--25959
6
5.5
6
100
0
66
51
18
15
15
1.77
30600--30645
24
1.9
24
95
0
83
50
8
39
2
1.46
35457--35502
24
1.9
24
95
0
83
50
8
39
2
1.46
40638--40691
24
2.2
24
83
6
65
25
12
40
20
1.88
44571--44608
15
2.4
16
86
4
51
23
21
26
28
1.99
45528--45575
22
2.2
22
96
0
87
47
2
16
33
1.58
46065--46095
2
15.5
2
100
0
62
51
0
0
48
1.00
46692--46736
21
2.1
21
83
0
54
33
11
2
53
1.49
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52901--52984
13
6.2
13
70
20
57
63
0
0
36
0.95
52895--52994
25
4.1
24
71
21
75
63
0
0
37
0.95
52924--53004
16
5.2
16
69
19
55
60
0
1
38
1.05
52929--53036
46
2.5
42
70
22
71
59
0
1
37
1.15
53418--53447
4
7.2
4
92
7
51
23
0
3
73
0.98
59748--59827
32
2.5
32
84
10
92
58
7
6
27
1.49
62110--62143
12
2.9
12
86
4
52
50
8
11
29
1.69
65505--65531
14
1.9
14
100
0
54
29
22
25
22
1.99
65429--65620
100
1.9
100
96
0
357
42
17
15
23
1.88
66351--66398
24
2.0
24
100
0
96
29
20
20
29
1.98
70848--70929
29
2.8
29
94
1
137
32
14
9
42
1.79
75611--75692
29
2.8
29
90
3
130
32
14
9
42
1.79
91347--91381
9
3.9
9
100
0
70
42
11
11
34
1.77

Tables:   1

The End!