genome.fa.s413.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000413.1 Hibiscus syriacus cultivar Beakdansim tig00000759_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  119521

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10002--10054	21	2.5	22	84	9	65	26	26	16	30	1.97
18699--18740	20	2.1	20	82	8	50	66	0	2	30	1.04
19297--19459	87	1.9	87	93	0	281	42	11	12	33	1.78
19594--20434	182	4.6	182	94	1	1438	27	16	12	42	1.85
19594--20434	361	2.3	363	93	1	1445	27	16	12	42	1.85
24290--24348	20	3.0	19	76	9	55	22	16	8	52	1.70
24081--24548	182	2.6	181	86	2	625	26	17	12	43	1.85
26243--26268	3	8.7	3	100	0	52	0	30	0	69	0.89
27499--27606	33	3.3	33	89	2	164	37	11	42	9	1.73
35903--35986	36	2.3	36	85	0	114	28	19	8	44	1.79
35914--36011	36	2.7	36	82	0	106	24	19	8	47	1.76
41784--41850	21	3.3	21	70	16	68	23	20	22	32	1.98
42440--42466	6	4.5	6	100	0	54	0	14	51	33	1.43
42568--42678	21	5.3	21	71	16	95	37	22	18	21	1.94
42564--42740	42	4.3	42	91	1	277	36	23	18	22	1.95
43893--43929	2	19.0	2	94	5	67	48	0	0	51	1.00
44367--44412	2	23.0	2	100	0	92	50	0	0	50	1.00
50939--50983	22	2.1	21	87	4	63	42	17	0	40	1.50
51403--51427	13	1.9	13	100	0	50	56	4	0	40	1.18
51520--51548	7	4.1	7	100	0	58	0	27	0	72	0.85
51844--51896	21	2.5	21	84	0	70	20	26	18	33	1.96
51886--51950	20	3.3	20	86	2	96	40	21	18	20	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52126--52258	19	7.4	19	73	19	115	42	20	21	15	1.88
52141--52168	14	2.0	14	100	0	56	42	21	21	14	1.88
52113--52279	33	4.8	33	80	9	190	43	21	21	13	1.87
52285--52387	19	5.7	19	85	11	153	10	22	21	45	1.82
52494--52530	14	2.6	14	82	0	56	45	18	0	35	1.50
52775--52923	20	7.3	20	75	6	111	20	16	22	40	1.91
52841--52913	21	3.5	21	76	10	87	19	13	26	41	1.88
52775--52908	40	3.3	41	90	1	191	20	16	22	41	1.90
54661--54717	14	3.9	14	70	20	53	38	3	5	52	1.41
56294--56378	31	2.7	31	76	8	91	27	28	28	16	1.97
62149--62215	33	2.0	33	94	0	116	59	7	10	22	1.55
71798--72341	275	2.0	269	95	3	984	43	7	8	40	1.62
73206--73293	24	3.7	24	86	6	124	36	20	19	23	1.95
77880--77958	24	3.3	24	80	7	79	40	18	15	25	1.90
77890--77954	24	2.7	24	90	4	96	36	20	18	24	1.94
80431--80469	18	2.2	18	95	0	69	10	17	51	20	1.74
81331--81382	24	2.2	24	83	6	63	40	5	0	53	1.25
81517--81554	15	2.5	15	91	0	58	47	2	0	50	1.15
86701--86735	17	2.0	18	88	5	54	60	22	5	11	1.52
87222--87295	21	3.5	21	90	0	103	29	25	18	25	1.98
87307--87371	21	3.1	21	91	2	96	32	23	21	23	1.98
87454--87499	6	7.7	6	95	0	83	34	47	15	2	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99215--99395	60	3.0	59	80	7	170	32	18	6	43	1.74
99866--99927	27	2.3	28	86	10	85	45	1	0	53	1.10
100665--100696	16	1.9	17	93	6	57	56	0	0	43	0.99
101340--101409	30	2.3	30	85	4	97	17	7	14	61	1.54
107359--107460	47	2.2	47	98	0	195	33	6	13	46	1.70
108925--109099	39	4.5	38	81	4	197	13	10	45	29	1.78
108938--109099	78	2.1	78	89	0	252	14	11	45	29	1.79
112198--112258	29	2.1	29	84	0	77	40	3	3	52	1.34

Tables:   1

The End!