Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01004130.1 Hibiscus syriacus cultivar Beakdansim tig00009036_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105088
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 1 of 2
Found at i:1516 original size:14 final size:14
Alignment explanation
Indices: 1497--1556 Score: 95
Period size: 14 Copynumber: 4.4 Consensus size: 14
1487 CGCTGGGCAT
1497 CCGAGGCCATCCGA
1 CCGAGGCCATCCGA
*
1511 CCGAGGTCATCCGA
1 CCGAGGCCATCCGA
1525 -CGAGGCCATCCGA
1 CCGAGGCCATCCGA
1538 CCGAGGCCATCCGA
1 CCGAGGCCATCCGA
*
1552 ACGAG
1 CCGAG
1557 CTATCCGAGG
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
13 12 0.29
14 30 0.71
ACGTcount: A:0.23, C:0.38, G:0.30, T:0.08
Consensus pattern (14 bp):
CCGAGGCCATCCGA
Found at i:1531 original size:27 final size:28
Alignment explanation
Indices: 1498--1564 Score: 102
Period size: 27 Copynumber: 2.5 Consensus size: 28
1488 GCTGGGCATC
*
1498 CGAGGCCATCCGACCGAGGTCATCCG-A
1 CGAGGCCATCCGACCGAGGCCATCCGAA
1525 CGAGGCCATCCGACCGAGGCCATCCGAA
1 CGAGGCCATCCGACCGAGGCCATCCGAA
*
1553 CGA-GCTATCCGA
1 CGAGGCCATCCGA
1565 GGCCATGCAC
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
27 33 0.89
28 4 0.11
ACGTcount: A:0.24, C:0.37, G:0.28, T:0.10
Consensus pattern (28 bp):
CGAGGCCATCCGACCGAGGCCATCCGAA
Found at i:1654 original size:14 final size:14
Alignment explanation
Indices: 1632--1664 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
1622 CCTCGCATAG
*
1632 CTCGTTCGGATGGC
1 CTCGGTCGGATGGC
1646 CTCGGTCGGATGGC
1 CTCGGTCGGATGGC
1660 CTCGG
1 CTCGG
1665 ATGCTCTCGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.06, C:0.30, G:0.39, T:0.24
Consensus pattern (14 bp):
CTCGGTCGGATGGC
Found at i:1676 original size:20 final size:20
Alignment explanation
Indices: 1651--1704 Score: 90
Period size: 20 Copynumber: 2.7 Consensus size: 20
1641 ATGGCCTCGG
1651 TCGGATGGCCTCGGATGCTC
1 TCGGATGGCCTCGGATGCTC
*
1671 TCGGATGGCCTCGGATGCTT
1 TCGGATGGCCTCGGATGCTC
*
1691 TCGGATGACCTCGG
1 TCGGATGGCCTCGG
1705 TCGATGCCTC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.11, C:0.28, G:0.35, T:0.26
Consensus pattern (20 bp):
TCGGATGGCCTCGGATGCTC
Found at i:1704 original size:10 final size:9
Alignment explanation
Indices: 1651--1721 Score: 61
Period size: 10 Copynumber: 7.0 Consensus size: 9
1641 ATGGCCTCGG
1651 TCGGATGGCC
1 TCGGAT-GCC
1661 TCGGATGCTC
1 TCGGATGC-C
1671 TCGGATGGCC
1 TCGGAT-GCC
*
1681 TCGGATGCTT
1 TCGGATGC-C
1691 TCGGATGACC
1 TCGGATG-CC
1701 TCGGTCGATGCC
1 TC-G--GATGCC
1713 TCGGATGCC
1 TCGGATGCC
1722 CAGCGTGTTG
Statistics
Matches: 52, Mismatches: 2, Indels: 15
0.75 0.03 0.22
Matches are distributed among these distances:
9 10 0.19
10 29 0.56
11 5 0.10
12 4 0.08
13 4 0.08
ACGTcount: A:0.11, C:0.30, G:0.34, T:0.25
Consensus pattern (9 bp):
TCGGATGCC
Found at i:1792 original size:29 final size:30
Alignment explanation
Indices: 1760--1818 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
1750 CAATCTCTTG
1760 GTAGGTCG-CCGGGAAGACATGGCGACCTA
1 GTAGGTCGTCCGGGAAGACATGGCGACCTA
*
1789 GTAGGTCGTCCGGGAAGGCATGGCGACCTA
1 GTAGGTCGTCCGGGAAGACATGGCGACCTA
1819 CGGCCAACAC
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
29 8 0.29
30 20 0.71
ACGTcount: A:0.22, C:0.24, G:0.39, T:0.15
Consensus pattern (30 bp):
GTAGGTCGTCCGGGAAGACATGGCGACCTA
Found at i:2949 original size:35 final size:34
Alignment explanation
Indices: 2910--2976 Score: 107
Period size: 35 Copynumber: 1.9 Consensus size: 34
2900 ATCACCGATT
*
2910 AGGTTTCATAAGAAATTTGAGTATTTTTCTTATAA
1 AGGTTTCATAAAAAATTTGAGTA-TTTTCTTATAA
*
2945 AGGTTTCATAAAAAATTTGGGTATTTTCTTAT
1 AGGTTTCATAAAAAATTTGAGTATTTTCTTAT
2977 TGAAGATTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 9 0.30
35 21 0.70
ACGTcount: A:0.33, C:0.06, G:0.15, T:0.46
Consensus pattern (34 bp):
AGGTTTCATAAAAAATTTGAGTATTTTCTTATAA
Found at i:5929 original size:33 final size:33
Alignment explanation
Indices: 5892--5954 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
5882 AAATGAAAAT
*
5892 GGATTTTGAA-AATCAAAATGAAATCTTGAAGAA
1 GGATTTAGAACAATCAAAATGAAAT-TTGAAGAA
**
5925 GGATTTAGAACTCTCAAAATGAAATTTGAA
1 GGATTTAGAACAATCAAAATGAAATTTGAA
5955 AGTATTGAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
33 14 0.54
34 12 0.46
ACGTcount: A:0.46, C:0.08, G:0.17, T:0.29
Consensus pattern (33 bp):
GGATTTAGAACAATCAAAATGAAATTTGAAGAA
Found at i:19860 original size:21 final size:21
Alignment explanation
Indices: 19836--19900 Score: 94
Period size: 21 Copynumber: 3.1 Consensus size: 21
19826 AATATAAATT
* *
19836 GTGTATCAATGCACTGCTATA
1 GTGTATCGATGCACTGCTACA
*
19857 GTGTATCGATGCACTGTTACA
1 GTGTATCGATGCACTGCTACA
*
19878 GTGTACCGATGCACTGCTACA
1 GTGTATCGATGCACTGCTACA
19899 GT
1 GT
19901 AATTTTTGCA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 39 1.00
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.31
Consensus pattern (21 bp):
GTGTATCGATGCACTGCTACA
Found at i:20753 original size:31 final size:31
Alignment explanation
Indices: 20617--20756 Score: 194
Period size: 31 Copynumber: 4.5 Consensus size: 31
20607 TCATAGATTA
* * *
20617 CGAAGAATC-TAGATAAACAATTCATATGTCC
1 CGAAGAA-CATAGGTAAACAGTCCATATGTCC
*
20648 CGAAGAACATAGATAAACAGTCCATATGTCC
1 CGAAGAACATAGGTAAACAGTCCATATGTCC
20679 CGAAGAACATAGGTAAACAGTCCATATGTCC
1 CGAAGAACATAGGTAAACAGTCCATATGTCC
* *
20710 TGACA-AACATAGGTAAACAGTCTATATGTCC
1 CGA-AGAACATAGGTAAACAGTCCATATGTCC
20741 CGAAGAACATAGGTAA
1 CGAAGAACATAGGTAA
20757 CCCTCGACTC
Statistics
Matches: 100, Mismatches: 6, Indels: 6
0.89 0.05 0.05
Matches are distributed among these distances:
30 2 0.02
31 97 0.97
32 1 0.01
ACGTcount: A:0.41, C:0.20, G:0.17, T:0.21
Consensus pattern (31 bp):
CGAAGAACATAGGTAAACAGTCCATATGTCC
Found at i:20973 original size:59 final size:59
Alignment explanation
Indices: 20864--20979 Score: 135
Period size: 59 Copynumber: 2.0 Consensus size: 59
20854 ATATCATTTC
* * * * *
20864 TCTTATAAACACATATCTCTTCTTTTCTGTCACGTATCACATGTACGTGTAATCATTGA
1 TCTTATAAACACATATCTCTTCTTTTCTCTCACATACCACATATACGTGTAAACATTGA
* * * *
20923 TCTTATAATCACATATTTCTT-TTCTTCTCTCACATACCATATATATGTGTAAACATT
1 TCTTATAAACACATATCTCTTCTT-TTCTCTCACATACCACATATACGTGTAAACATT
20980 TATTTCATAT
Statistics
Matches: 47, Mismatches: 9, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
58 2 0.04
59 45 0.96
ACGTcount: A:0.28, C:0.22, G:0.07, T:0.43
Consensus pattern (59 bp):
TCTTATAAACACATATCTCTTCTTTTCTCTCACATACCACATATACGTGTAAACATTGA
Found at i:21046 original size:14 final size:14
Alignment explanation
Indices: 21012--21072 Score: 50
Period size: 14 Copynumber: 4.3 Consensus size: 14
21002 ATCACATGTG
* *
21012 CATATAATCACATA
1 CATATAAACATATA
*
21026 GCATATAAACTTATA
1 -CATATAAACATATA
**
21041 CATATATTCATATA
1 CATATAAACATATA
**
21055 CATATATTCATATA
1 CATATAAACATATA
21069 CATA
1 CATA
21073 CTTACATATA
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
14 29 0.73
15 11 0.28
ACGTcount: A:0.46, C:0.16, G:0.02, T:0.36
Consensus pattern (14 bp):
CATATAAACATATA
Found at i:21066 original size:22 final size:21
Alignment explanation
Indices: 21044--21084 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
21034 ACTTATACAT
*
21044 ATATTCATA-TACATATATTC
1 ATATACATACTACATATATTC
21064 ATATACATACTTACATATATT
1 ATATACATAC-TACATATATT
21085 TCGTGTATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 8 0.44
22 10 0.56
ACGTcount: A:0.41, C:0.15, G:0.00, T:0.44
Consensus pattern (21 bp):
ATATACATACTACATATATTC
Found at i:21080 original size:14 final size:14
Alignment explanation
Indices: 21027--21082 Score: 60
Period size: 14 Copynumber: 4.0 Consensus size: 14
21017 AATCACATAG
* *
21027 CATATAAACTTATA
1 CATATATACATATA
*
21041 CATATATTCATATA
1 CATATATACATATA
*
21055 CATATATTCATATA
1 CATATATACATATA
21069 CATACT-TACATATA
1 CATA-TATACATATA
21083 TTTCGTGTAT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
14 36 0.97
15 1 0.03
ACGTcount: A:0.45, C:0.16, G:0.00, T:0.39
Consensus pattern (14 bp):
CATATATACATATA
Found at i:31221 original size:17 final size:19
Alignment explanation
Indices: 31180--31221 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 19
31170 AGGAGCGTAG
31180 GTGTATCGATACACTATCAA
1 GTGTATCGATACAC-ATCAA
*
31200 GTGTATCGGTACAC-TC-A
1 GTGTATCGATACACATCAA
31217 GTGTA
1 GTGTA
31222 AAATTCAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 6 0.29
18 2 0.10
20 13 0.62
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (19 bp):
GTGTATCGATACACATCAA
Found at i:31899 original size:13 final size:13
Alignment explanation
Indices: 31881--31906 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
31871 TAGCCATTAG
31881 TTCATAATCAATA
1 TTCATAATCAATA
31894 TTCATAATCAATA
1 TTCATAATCAATA
31907 CATAATGGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.15, G:0.00, T:0.38
Consensus pattern (13 bp):
TTCATAATCAATA
Found at i:32043 original size:23 final size:24
Alignment explanation
Indices: 32003--32052 Score: 77
Period size: 23 Copynumber: 2.1 Consensus size: 24
31993 CAAAGCATTC
32003 AAACACAAATATCCAAAACATCCA
1 AAACACAAATATCCAAAACATCCA
32027 AAACAC-AA-ATCCAAAAACATCCA
1 AAACACAAATATCC-AAAACATCCA
32050 AAA
1 AAA
32053 TGTTTTAACA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
22 4 0.16
23 15 0.60
24 6 0.24
ACGTcount: A:0.62, C:0.28, G:0.00, T:0.10
Consensus pattern (24 bp):
AAACACAAATATCCAAAACATCCA
Found at i:41678 original size:130 final size:131
Alignment explanation
Indices: 41445--42041 Score: 946
Period size: 130 Copynumber: 4.5 Consensus size: 131
41435 GTGATGAATC
* *
41445 AAAAATGTCGATCCACCTCATTCTGTGATGGAATCGAAACGAGATGTGTGTGCTGATCTACCTCT
1 AAAAATGTCGATCCACCTCCTTCTGTGATGGAATCG-AACGAGA--TGTGTGCTGATCTACCTCC
* *
41510 TTCTGTGATAAAATCGAACTAAAAGTTGACGCTGATCCAACTCCTTCTGCGATGGATTTGAGCAA
63 TTCTGCGATAGAATCGAACTAAAAGTTGACGCTGATCCAACTCCTTCTGCGATGGATTTGAGCAA
41575 AAAT
128 AAAT
*
41579 AAAAATGTCGATCCACCTCCTTCTGTGATAGAATCGAACGAGATGT-TGCTGATCTACCTCCTTC
1 AAAAATGTCGATCCACCTCCTTCTGTGATGGAATCGAACGAGATGTGTGCTGATCTACCTCCTTC
* *
41643 TGCGATAGAATCGAGCTAAAAGTTGACGCTAATCCAACTCCTTCTGCGATGGATTTGAGCGAAAA
66 TGCGATAGAATCGAACTAAAAGTTGACGCTGATCCAACTCCTTCTGCGATGGATTTGAGC-AAAA
41708 AT
130 AT
*
41710 AAAAATGTCGATCCACCTCCTTCTGTGATGGAAATCGAACGATATGTCGATGCTGATCTACCTCC
1 AAAAATGTCGATCCACCTCCTTCTGTGATGG-AATCGAACGAGATGT-G-TGCTGATCTACCTCC
* * * * *
41775 TTCTGTGATAGAATCGAGCAAAAAGTTGACGCTGATCTAACTCCTTCTGCGATGGATTTGAGCGA
63 TTCTGCGATAGAATCGAACTAAAAGTTGACGCTGATCCAACTCCTTCTGCGATGGATTTGAGCAA
41840 AAAT
128 AAAT
41844 AAAAATGTCGATCCACCTCCTTCTGTGATGGAATCGAACGAGATGT-TGCTGATCTACCTCCTTC
1 AAAAATGTCGATCCACCTCCTTCTGTGATGGAATCGAACGAGATGTGTGCTGATCTACCTCCTTC
*
41908 TGCGATAGAATCGAACTAAAAGTTGACGCTGATCCAACTCCTTCTGCGATGGATTTGAGCGAAAA
66 TGCGATAGAATCGAACTAAAAGTTGACGCTGATCCAACTCCTTCTGCGATGGATTTGAGCAAAAA
41973 T
131 T
* *
41974 AAAAATGTCGATCCATCTCCTTCTGTGATGGAAATCGAACGATATGTCGATGCTGATCTACCTCC
1 AAAAATGTCGATCCACCTCCTTCTGTGATGG-AATCGAACGAGATGT-G-TGCTGATCTACCTCC
42039 TTC
63 TTC
42042 ACCTTCTGTG
Statistics
Matches: 433, Mismatches: 21, Indels: 18
0.92 0.04 0.04
Matches are distributed among these distances:
130 183 0.42
131 53 0.12
132 14 0.03
133 21 0.05
134 88 0.20
135 74 0.17
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.28
Consensus pattern (131 bp):
AAAAATGTCGATCCACCTCCTTCTGTGATGGAATCGAACGAGATGTGTGCTGATCTACCTCCTTC
TGCGATAGAATCGAACTAAAAGTTGACGCTGATCCAACTCCTTCTGCGATGGATTTGAGCAAAAA
T
Found at i:41918 original size:265 final size:266
Alignment explanation
Indices: 41445--42382 Score: 1095
Period size: 265 Copynumber: 3.4 Consensus size: 266
41435 GTGATGAATC
* * *
41445 AAAAATGTCGATCCACCTCATTCTGTGATGG-AATCGAAACGAGATGT-GTGTGCTGATCTA-CC
1 AAAAATGTCGATCCACCTCCTTCTGTGATGGAAATCG-AACGATATGTCG-ATGCTGATCTACCC
* * *
41507 -TCTTTCTGTGATAAAATCGAACTAAAAGTTGACGCTGATCCAACTCCTTCTGCGATGGATTTGA
64 TTCCTTCTGTGATAGAATCGAACAAAAAGTTGACGCTGATCCAACTCCTTCTGCGATGGATTTGA
*
41571 GCAAAAATAAAAATGTCGATCCACCTCCTTCTGTGATAGAATCGAACGAGATGTTGCTGATCTAC
129 GC-AAAATAAAAATGTCGATCCACCTCCTTCTGTGATGGAATCGAACGAGATGTTGCTGATCTAC
*
41636 CTCCTTCTGCGATAGAATCGAGCTAAAAGTTGACGCTAATCCAACTCCTTCTGCGATGGATTTGA
193 CTCCTTCTGCGATAGAATCGAGCTAAAAGTTGACGCTGATCCAACTCCTTCTGCGATGGATTTGA
41701 GCGAAAAAT
258 GCGAAAAAT
41710 AAAAATGTCGATCCACCTCCTTCTGTGATGGAAATCGAACGATATGTCGATGCTGATCTA-CC-T
1 AAAAATGTCGATCCACCTCCTTCTGTGATGGAAATCGAACGATATGTCGATGCTGATCTACCCTT
* *
41773 CCTTCTGTGATAGAATCGAGCAAAAAGTTGACGCTGATCTAACTCCTTCTGCGATGGATTTGAGC
66 CCTTCTGTGATAGAATCGAACAAAAAGTTGACGCTGATCCAACTCCTTCTGCGATGGATTTGAGC
41838 GAAAATAAAAATGTCGATCCACCTCCTTCTGTGATGGAATCGAACGAGATGTTGCTGATCTACCT
131 -AAAATAAAAATGTCGATCCACCTCCTTCTGTGATGGAATCGAACGAGATGTTGCTGATCTACCT
*
41903 CCTTCTGCGATAGAATCGAACTAAAAGTTGACGCTGATCCAACTCCTTCTGCGATGGATTTGAGC
195 CCTTCTGCGATAGAATCGAGCTAAAAGTTGACGCTGATCCAACTCCTTCTGCGATGGATTTGAGC
41968 G-AAAAT
260 GAAAAAT
*
41974 AAAAATGTCGATCCATCTCCTTCTGTGATGGAAATCGAACGATATGTCGATGCTGATCTACCTCC
1 AAAAATGTCGATCCACCTCCTTCTGTGATGGAAATCGAACGATATGTCGATGCTGATCTA-C-CC
* * * * * * * * * * * * *
42039 TTCACCTTCTGTGATGGAAATCGAACGATATGTCGATGTTGATCTACCTCATTCTGTGATAGAAT
64 TT--CCTTCTGTGATAG-AATCGAACAAAAAGTTGACGCTGATCCAACTCCTTCTGCGATGGATT
* *** * * **
42104 CGAGCAAAA-AGTTGACG-CTGATCCAACTCCTTCTGCGATTGATTTGAGCGAAAATAAAAATGT
126 TGAGCAAAATA-AAAATGTC-GATCCACCTCCTTCT--G--TGA--T--G-G--AAT-CGAA---
* * * ** * *
42167 CGATCCATGTCGATGCTGATCTACCTCATTCTGTGATAGAATCGAGGAAAAAATTGACGTTGATC
174 CGA--GATGT---TGCTGATCTACCTCCTTCTGCGATAGAATCGAGCTAAAAGTTGACGCTGATC
42232 CAACTCCTTCTGCGATGGATTTGAGC-AAAAAT
234 CAACTCCTTCTGCGATGGATTTGAGCGAAAAAT
**
42264 AAAAATGTCGATCCACCTCCTTCTGTGATGGAAATCGAACGATATGTCGATTTTGATCTACCTCA
1 AAAAATGTCGATCCACCTCCTTCTGTGATGGAAATCGAACGATATGTCGATGCTGATCTACC-C-
* *
42329 TTCTCATTCTGTGATAGAATCGAGCAAAAAATTGACGCTGATCCAACTCCTTCT
64 TTC-C-TTCTGTGATAGAATCGAACAAAAAGTTGACGCTGATCCAACTCCTTCT
42383 TCTTCTGTGA
Statistics
Matches: 580, Mismatches: 57, Indels: 48
0.85 0.08 0.07
Matches are distributed among these distances:
264 64 0.11
265 239 0.41
266 6 0.01
267 2 0.00
268 1 0.00
269 2 0.00
270 32 0.06
271 39 0.07
272 1 0.00
274 3 0.01
276 1 0.00
278 1 0.00
279 1 0.00
281 3 0.01
282 2 0.00
285 3 0.01
287 4 0.01
288 2 0.00
289 29 0.05
290 145 0.25
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.29
Consensus pattern (266 bp):
AAAAATGTCGATCCACCTCCTTCTGTGATGGAAATCGAACGATATGTCGATGCTGATCTACCCTT
CCTTCTGTGATAGAATCGAACAAAAAGTTGACGCTGATCCAACTCCTTCTGCGATGGATTTGAGC
AAAATAAAAATGTCGATCCACCTCCTTCTGTGATGGAATCGAACGAGATGTTGCTGATCTACCTC
CTTCTGCGATAGAATCGAGCTAAAAGTTGACGCTGATCCAACTCCTTCTGCGATGGATTTGAGCG
AAAAAT
Found at i:42039 original size:45 final size:44
Alignment explanation
Indices: 41454--42138 Score: 285
Period size: 44 Copynumber: 15.4 Consensus size: 44
41444 CAAAAATGTC
* * * *
41454 GATCCACCTCATTCTGTGATGGAATCGAAACGAGATGT-GTGTGCT
1 GATCTACCTCCTTCTGTGATGGAATCG-AACGAAATGTCG-ATGCT
* ** * * * *
41499 GATCTACCTCTTTCTGTGATAAAATCGAACTAAAAGTTGACGCT
1 GATCTACCTCCTTCTGTGATGGAATCGAACGAAATGTCGATGCT
* * * * * * * ****
41543 GATCCAACTCCTTCTGCGATGGATTTGAGCAAAAATAAAAATG-T
1 GATCTACCTCCTTCTGTGATGGAATCGAAC-GAAATGTCGATGCT
* * *
41587 CGATCCACCTCCTTCTGTGATAGAATCGAACGAGATGT---TGCT
1 -GATCTACCTCCTTCTGTGATGGAATCGAACGAAATGTCGATGCT
* * * * * * *
41629 GATCTACCTCCTTCTGCGATAGAATCGAGCTAAAAGTTGACGCT
1 GATCTACCTCCTTCTGTGATGGAATCGAACGAAATGTCGATGCT
* * * * * * * ****
41673 AATCCAACTCCTTCTGCGATGGATTTGAGCGAAAAATAAAAATG-T
1 GATCTACCTCCTTCTGTGATGGAATCGAACG--AAATGTCGATGCT
* *
41718 CGATCCACCTCCTTCTGTGATGGAAATCGAACGATATGTCGATGCT
1 -GATCTACCTCCTTCTGTGATGG-AATCGAACGAAATGTCGATGCT
* * * * * *
41764 GATCTACCTCCTTCTGTGATAGAATCGAGCAAAAAGTTGACGCT
1 GATCTACCTCCTTCTGTGATGGAATCGAACGAAATGTCGATGCT
* * * * * ****
41808 GATCTAACTCCTTCTGCGATGGATTTGAGCGAAAATAAAAATG-T
1 GATCTACCTCCTTCTGTGATGGAATCGAACG-AAATGTCGATGCT
* *
41852 CGATCCACCTCCTTCTGTGATGGAATCGAACGAGATGT---TGCT
1 -GATCTACCTCCTTCTGTGATGGAATCGAACGAAATGTCGATGCT
* * * * * *
41894 GATCTACCTCCTTCTGCGATAGAATCGAACTAAAAGTTGACGCT
1 GATCTACCTCCTTCTGTGATGGAATCGAACGAAATGTCGATGCT
* * * * * * ****
41938 GATCCAACTCCTTCTGCGATGGATTTGAGCGAAAATAAAAATG-T
1 GATCTACCTCCTTCTGTGATGGAATCGAACG-AAATGTCGATGCT
* * *
41982 CGATCCATCTCCTTCTGTGATGGAAATCGAACGATATGTCGATGCT
1 -GATCTACCTCCTTCTGTGATGG-AATCGAACGAAATGTCGATGCT
* *
42028 GATCTACCTCCTTCACCTTCTGTGATGGAAATCGAACGATATGTCGATGTT
1 GATCTA---CC-T--CCTTCTGTGATGG-AATCGAACGAAATGTCGATGCT
* * * * * * *
42079 GATCTACCTCATTCTGTGATAGAATCGAGCAAAAAGTTGACGCT
1 GATCTACCTCCTTCTGTGATGGAATCGAACGAAATGTCGATGCT
* *
42123 GATCCAACTCCTTCTG
1 GATCTACCTCCTTCTG
42139 CGATTGATTT
Statistics
Matches: 472, Mismatches: 140, Indels: 57
0.71 0.21 0.09
Matches are distributed among these distances:
41 66 0.14
42 2 0.00
44 163 0.35
45 157 0.33
46 32 0.07
47 7 0.01
48 3 0.01
49 1 0.00
51 41 0.09
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (44 bp):
GATCTACCTCCTTCTGTGATGGAATCGAACGAAATGTCGATGCT
Found at i:42068 original size:51 final size:51
Alignment explanation
Indices: 41992--42088 Score: 185
Period size: 51 Copynumber: 1.9 Consensus size: 51
41982 CGATCCATCT
41992 CCTTCTGTGATGGAAATCGAACGATATGTCGATGCTGATCTACCTCCTTCA
1 CCTTCTGTGATGGAAATCGAACGATATGTCGATGCTGATCTACCTCCTTCA
*
42043 CCTTCTGTGATGGAAATCGAACGATATGTCGATGTTGATCTACCTC
1 CCTTCTGTGATGGAAATCGAACGATATGTCGATGCTGATCTACCTC
42089 ATTCTGTGAT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 45 1.00
ACGTcount: A:0.24, C:0.24, G:0.21, T:0.32
Consensus pattern (51 bp):
CCTTCTGTGATGGAAATCGAACGATATGTCGATGCTGATCTACCTCCTTCA
Found at i:42253 original size:105 final size:105
Alignment explanation
Indices: 42068--42278 Score: 368
Period size: 105 Copynumber: 2.0 Consensus size: 105
42058 ATCGAACGAT
* *
42068 ATGTCGATGTTGATCTACCTCATTCTGTGATAGAATCGAGCAAAAAGTTGACGCTGATCCAACTC
1 ATGTCGATGCTGATCTACCTCATTCTGTGATAGAATCGAGCAAAAAATTGACGCTGATCCAACTC
* *
42133 CTTCTGCGATTGATTTGAGCGAAAATAAAAATGTCGATCC
66 CTTCTGCGATGGATTTGAGCAAAAATAAAAATGTCGATCC
* *
42173 ATGTCGATGCTGATCTACCTCATTCTGTGATAGAATCGAGGAAAAAATTGACGTTGATCCAACTC
1 ATGTCGATGCTGATCTACCTCATTCTGTGATAGAATCGAGCAAAAAATTGACGCTGATCCAACTC
42238 CTTCTGCGATGGATTTGAGCAAAAATAAAAATGTCGATCC
66 CTTCTGCGATGGATTTGAGCAAAAATAAAAATGTCGATCC
42278 A
1 A
42279 CCTCCTTCTG
Statistics
Matches: 100, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
105 100 1.00
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29
Consensus pattern (105 bp):
ATGTCGATGCTGATCTACCTCATTCTGTGATAGAATCGAGCAAAAAATTGACGCTGATCCAACTC
CTTCTGCGATGGATTTGAGCAAAAATAAAAATGTCGATCC
Found at i:42371 original size:50 final size:50
Alignment explanation
Indices: 42325--42432 Score: 157
Period size: 50 Copynumber: 2.2 Consensus size: 50
42315 TTTGATCTAC
42325 CTCATTC-TCATTCTGTGATAGAATCGAGCAAAAAA-TTGACGCTGATCCAA
1 CTCATTCTTC-TTCTGTGATAGAATCGA-CAAAAAAGTTGACGCTGATCCAA
* * *
42375 CTCCTTCTTCTTCTGTGATAGAATCGACAAAAAAGTTGACGCTAACCCAA
1 CTCATTCTTCTTCTGTGATAGAATCGACAAAAAAGTTGACGCTGATCCAA
42425 CTCATTCT
1 CTCATTCT
42433 CGATGGATTT
Statistics
Matches: 52, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
49 7 0.13
50 43 0.83
51 2 0.04
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (50 bp):
CTCATTCTTCTTCTGTGATAGAATCGACAAAAAAGTTGACGCTGATCCAA
Found at i:42457 original size:189 final size:181
Alignment explanation
Indices: 42195--42562 Score: 517
Period size: 189 Copynumber: 2.0 Consensus size: 181
42185 ATCTACCTCA
* * * * *
42195 TTCTGTGATAGAATCGAGGAAAAAATTGACGTTGATCCAACTCCTTCTGCGATGGATTTGAGCAA
1 TTCTGTGATAGAATCGAGCAAAAAATTGACGCTAACCCAACTCATTCTGCGATGGATTTGAGCAA
*
42260 AAATAAAAATGTCGATCCACCTCCTTCTGTGATGGAAATCGAACGATATGTCGATTTTGATCT-A
66 AAATAAAAATGTCGATCCACCTCCTTCTGTGATGGAAATCGAACG--A----GATGTTG--CTGA
*
42324 CCTCATTCTCATTCTGTGATAGAATCGAGCAAAAAATTGACGCTGATCCAACTCCTTCTTC
123 CCT-A-CCTCATTCTGTGATAGAATCGAGCAAAAAATTGACGCTGATCCAACTCCTTCTTC
*
42385 TTCTGTGATAGAATCGA-CAAAAAAGTTGACGCTAACCCAACTCATTCT-CGATGGATTTGAGCG
1 TTCTGTGATAGAATCGAGCAAAAAA-TTGACGCTAACCCAACTCATTCTGCGATGGATTTGAGCA
42448 AAAATAAAAATGTCGATCCACCTCCTTCTGTGATGGAAATCGAACGAGATGTTGCTGACCTACCT
65 AAAATAAAAATGTCGATCCACCTCCTTCTGTGATGGAAATCGAACGAGATGTTGCTGACCTACCT
* * *
42513 CATTCTGTGATAGAATCGAGCTAAAAGTTGACGTTGATCCAACTCCTTCT
130 CATTCTGTGATAGAATCGAGCAAAAAATTGACGCTGATCCAACTCCTTCT
42563 GCGATGGATT
Statistics
Matches: 165, Mismatches: 11, Indels: 14
0.87 0.06 0.07
Matches are distributed among these distances:
180 49 0.30
181 3 0.02
182 4 0.02
183 6 0.04
187 1 0.01
189 66 0.40
190 36 0.22
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.29
Consensus pattern (181 bp):
TTCTGTGATAGAATCGAGCAAAAAATTGACGCTAACCCAACTCATTCTGCGATGGATTTGAGCAA
AAATAAAAATGTCGATCCACCTCCTTCTGTGATGGAAATCGAACGAGATGTTGCTGACCTACCTC
ATTCTGTGATAGAATCGAGCAAAAAATTGACGCTGATCCAACTCCTTCTTC
Found at i:42618 original size:131 final size:132
Alignment explanation
Indices: 42385--42677 Score: 457
Period size: 131 Copynumber: 2.2 Consensus size: 132
42375 CTCCTTCTTC
42385 TTCTGTGATAGAATCGA-CAAAAAAGTTGACGCTAACCCAACTCATTCTCGATGGATTTGAGCGA
1 TTCTGTGATAGAATCGAGC-AAAAAGTTGACGCTAACCCAACTCATTCTCGATGGATTTGAGCGA
*
42449 AAATAAAAATGTCGATCCACCTCCTTCTGTGATGGAAATCGAACGAGATG-T-TGCTGACCTACC
65 AAATAAAAATGCCGATCCACCTCCTTCTGTGATGGAAATCGAACGAGATGTTATGCTGACCTACC
42512 TCA
130 TCA
* * * * *
42515 TTCTGTGATAGAATCGAGCTAAAAGTTGACGTTGATCCAACTCCTTCTGCGATGGATTTGAGCGA
1 TTCTGTGATAGAATCGAGCAAAAAGTTGACGCTAACCCAACTCATTCT-CGATGGATTTGAGCGA
* *
42580 AAATAAAAATGCCGATCCACCTCCTTCTGTGATGGAAATCGAACGATATGTTGATGCTGATCTAC
65 AAATAAAAATGCCGATCCACCTCCTTCTGTGATGGAAATCGAACGAGATGTT-ATGCTGACCTAC
*
42645 CTTA
129 CTCA
42649 TTCTGTGATAGAATCGAGCAAAAAGTTGA
1 TTCTGTGATAGAATCGAGCAAAAAGTTGA
42678 ACAATTTCTT
Statistics
Matches: 148, Mismatches: 10, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
130 41 0.28
131 65 0.44
132 1 0.01
134 41 0.28
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.28
Consensus pattern (132 bp):
TTCTGTGATAGAATCGAGCAAAAAGTTGACGCTAACCCAACTCATTCTCGATGGATTTGAGCGAA
AATAAAAATGCCGATCCACCTCCTTCTGTGATGGAAATCGAACGAGATGTTATGCTGACCTACCT
CA
Found at i:43163 original size:36 final size:35
Alignment explanation
Indices: 43113--43399 Score: 194
Period size: 36 Copynumber: 8.4 Consensus size: 35
43103 AAAGTTTTTG
* * *
43113 TGTTTCAAGAGAAACTGTCTCCAGGGAGACAAAAT
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAAT
* *
43148 TCAG-TTCAAGGGAAAC-GATCTCAA-AG-GTC--GA-
1 T--GTTTCAAGGGAAACTG-TCTCAAGAGAGACAAAAT
*
43179 TGTTTCAAGGGAAACTGCCTCAAGAGAGACAAAAT
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAAT
*
43214 TCGTTTCAAGGGAAACTGTCTCAAGGGAGACAAAATT
1 T-GTTTCAAGGGAAACTGTCTCAAGAGAGACAAAA-T
** * ****
43251 TGTTTCAAGGGAAACAATCTC---A-A-ATATTGG
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAAT
43281 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAACTT
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAA--T
** ****
43318 TGTTTCAAGGGAAACAATCTC-A-A-AG--ATTGG
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAAT
43348 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAACTT
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAA--T
43385 TGTTTCAAGGGAAAC
1 TGTTTCAAGGGAAAC
43400 AATCTTAAAT
Statistics
Matches: 189, Mismatches: 37, Indels: 50
0.68 0.13 0.18
Matches are distributed among these distances:
29 1 0.01
30 55 0.29
31 7 0.04
32 6 0.03
33 3 0.02
34 6 0.03
35 8 0.04
36 66 0.35
37 37 0.20
ACGTcount: A:0.37, C:0.16, G:0.23, T:0.24
Consensus pattern (35 bp):
TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAAT
Found at i:43193 original size:66 final size:66
Alignment explanation
Indices: 43113--43237 Score: 182
Period size: 66 Copynumber: 1.9 Consensus size: 66
43103 AAAGTTTTTG
* * *
43113 TGTTTCAAGAGAAACTGTCTCCAGGGAGACAAAATTCAG-TTCAAGGGAAAC-GATCTCAAAGGT
1 TGTTTCAAGAGAAACTGCCTCAAGAGAGACAAAATTC-GTTTCAAGGGAAACTG-TCTCAAAGGT
43176 CGA
64 CGA
*
43179 TGTTTCAAGGGAAACTGCCTCAAGAGAGACAAAATTCGTTTCAAGGGAAACTGTCTCAA
1 TGTTTCAAGAGAAACTGCCTCAAGAGAGACAAAATTCGTTTCAAGGGAAACTGTCTCAA
43238 GGGAGACAAA
Statistics
Matches: 53, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
65 1 0.02
66 51 0.96
67 1 0.02
ACGTcount: A:0.36, C:0.18, G:0.23, T:0.22
Consensus pattern (66 bp):
TGTTTCAAGAGAAACTGCCTCAAGAGAGACAAAATTCGTTTCAAGGGAAACTGTCTCAAAGGTCG
A
Found at i:43245 original size:102 final size:103
Alignment explanation
Indices: 43114--43332 Score: 325
Period size: 102 Copynumber: 2.1 Consensus size: 103
43104 AAGTTTTTGT
* * * *
43114 GTTTCAAGAGAAACTGTCTCCAGGGAGACAAAATTCAG-TTCAAGGGAAACGATCTCAAAGGTCG
1 GTTTCAAGGGAAACTGTCTCAAGGGAGACAAAATT-AGTTTCAAGGGAAACAATCTCAAAGATCG
43178 ATGTTTCAAGGGAAACTGCCTCAAGAGAGACAAAA-TTC
65 ATGTTTCAAGGGAAACTGCCTCAAGAGAGACAAAACTTC
* * * *
43216 GTTTCAAGGGAAACTGTCTCAAGGGAGACAAAATTTGTTTCAAGGGAAACAATCTCAAATATTGG
1 GTTTCAAGGGAAACTGTCTCAAGGGAGACAAAATTAGTTTCAAGGGAAACAATCTCAAAGATCGA
* *
43281 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAACTTT
66 TGTTTCAAGGGAAACTGCCTCAAGAGAGACAAAACTTC
43319 GTTTCAAGGGAAAC
1 GTTTCAAGGGAAAC
43333 AATCTCAAAG
Statistics
Matches: 105, Mismatches: 10, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
101 1 0.01
102 88 0.84
103 16 0.15
ACGTcount: A:0.37, C:0.16, G:0.23, T:0.23
Consensus pattern (103 bp):
GTTTCAAGGGAAACTGTCTCAAGGGAGACAAAATTAGTTTCAAGGGAAACAATCTCAAAGATCGA
TGTTTCAAGGGAAACTGCCTCAAGAGAGACAAAACTTC
Found at i:43285 original size:30 final size:30
Alignment explanation
Indices: 43251--43437 Score: 94
Period size: 30 Copynumber: 5.8 Consensus size: 30
43241 AGACAAAATT
*
43251 TGTTTCAAGGGAAACAATCTCAAATATTGG
1 TGTTTCAAGGGAAACAATCTCAAAAATTGG
**
43281 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAACTT--
1 TGTTTCAAGGGAAACAATCTC-------A-AAAA-TTGG
*
43318 TGTTTCAAGGGAAACAATCTCAAAGATTGG
1 TGTTTCAAGGGAAACAATCTCAAAAATTGG
**
43348 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAACTT--
1 TGTTTCAAGGGAAACAATCTC-------A-AAAA-TTGG
* *
43385 TGTTTCAAGGGAAACAATCTTAAATATTGG
1 TGTTTCAAGGGAAACAATCTCAAAAATTGG
* *
43415 TGTTTCAAGAGAAACTATCTCAA
1 TGTTTCAAGGGAAACAATCTCAA
43438 GAGAGATAAA
Statistics
Matches: 119, Mismatches: 16, Indels: 44
0.66 0.09 0.25
Matches are distributed among these distances:
28 4 0.03
29 6 0.05
30 60 0.50
37 39 0.33
38 6 0.05
39 4 0.03
ACGTcount: A:0.37, C:0.14, G:0.20, T:0.28
Consensus pattern (30 bp):
TGTTTCAAGGGAAACAATCTCAAAAATTGG
Found at i:43348 original size:67 final size:67
Alignment explanation
Indices: 43216--43476 Score: 416
Period size: 67 Copynumber: 3.9 Consensus size: 67
43206 GACAAAATTC
*
43216 GTTTCAAGGGAAACTGTCTCAAGGGAGACAAAA-TTTGTTTCAAGGGAAACAATCTCAAATATTG
1 GTTTCAAGGGAAACTGTCTCAAGAGAGACAAAACTTTGTTTCAAGGGAAACAATCTCAAATATTG
43280 GT
66 GT
*
43282 GTTTCAAGGGAAACTGTCTCAAGAGAGACAAAACTTTGTTTCAAGGGAAACAATCTCAAAGATTG
1 GTTTCAAGGGAAACTGTCTCAAGAGAGACAAAACTTTGTTTCAAGGGAAACAATCTCAAATATTG
43347 GT
66 GT
*
43349 GTTTCAAGGGAAACTGTCTCAAGAGAGACAAAACTTTGTTTCAAGGGAAACAATCTTAAATATTG
1 GTTTCAAGGGAAACTGTCTCAAGAGAGACAAAACTTTGTTTCAAGGGAAACAATCTCAAATATTG
43414 GT
66 GT
* * * * * *
43416 GTTTCAAGAGAAACTATCTCAAGAGAGATAAAATCTCCTGTTTCGAGGGAAACTATCTCAA
1 GTTTCAAGGGAAACTGTCTCAAGAGAGACAAAA-CT-TTGTTTCAAGGGAAACAATCTCAA
43477 GCGAGATAAA
Statistics
Matches: 181, Mismatches: 11, Indels: 3
0.93 0.06 0.02
Matches are distributed among these distances:
66 32 0.18
67 127 0.70
68 2 0.01
69 20 0.11
ACGTcount: A:0.37, C:0.15, G:0.21, T:0.27
Consensus pattern (67 bp):
GTTTCAAGGGAAACTGTCTCAAGAGAGACAAAACTTTGTTTCAAGGGAAACAATCTCAAATATTG
GT
Found at i:43469 original size:39 final size:39
Alignment explanation
Indices: 43415--43649 Score: 285
Period size: 39 Copynumber: 6.0 Consensus size: 39
43405 TAAATATTGG
* * *
43415 TGTTTCAAGAGAAACTATCTCAAGAGAGATAAAATCTCC
1 TGTTTCGAGGGAAACTATCTCAAGAGAGATAAAATCTTC
*
43454 TGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTC
1 TGTTTCGAGGGAAACTATCTCAAGAGAGATAAAATCTTC
* * * * *
43493 TATTTCAAGGGAAACTATCTCAAGCGAGATAAAATATTA
1 TGTTTCGAGGGAAACTATCTCAAGAGAGATAAAATCTTC
* *
43532 TGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATTTTC
1 TGTTTCGAGGGAAACTATCTCAAGAGAGATAAAATCTTC
* * *
43571 TGTTTCGAGAGAAACTATCTCAA-ATGAGACAAACTCTTC
1 TGTTTCGAGGGAAACTATCTCAAGA-GAGATAAAATCTTC
* * *
43610 TATTTCGAGGGAAATTATCTCAAGTA-AGATACAATCTTC
1 TGTTTCGAGGGAAACTATCTCAAG-AGAGATAAAATCTTC
43649 T
1 T
43650 TTAAAAACAA
Statistics
Matches: 170, Mismatches: 23, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
39 169 0.99
41 1 0.01
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.29
Consensus pattern (39 bp):
TGTTTCGAGGGAAACTATCTCAAGAGAGATAAAATCTTC
Found at i:43546 original size:78 final size:78
Alignment explanation
Indices: 43417--43649 Score: 315
Period size: 78 Copynumber: 3.0 Consensus size: 78
43407 AATATTGGTG
*
43417 TTTCAAGAGAAACTATCTCAAGAGAGATAAAATCTCCTGTTTCGAGGGAAACTATCTCAAGCGAG
1 TTTCAAGAGAAACTATCTCAAGAGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAG
43482 ATAAAATCTTCTA
66 ATAAAATCTTCTA
* * * *
43495 TTTCAAGGGAAACTATCTCAAGCGAGATAAAATATTATGTTTCGAGGGAAACTATCTCAAGCGAG
1 TTTCAAGAGAAACTATCTCAAGAGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAG
* *
43560 ATAAAATTTTCTG
66 ATAAAATCTTCTA
* * * * * **
43573 TTTCGAGAGAAACTATCTCAA-ATGAGACAAACTCTTCTATTTCGAGGGAAATTATCTCAAGTAA
1 TTTCAAGAGAAACTATCTCAAGA-GAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGA
*
43637 GATACAATCTTCT
65 GATAAAATCTTCT
43650 TTAAAAACAA
Statistics
Matches: 134, Mismatches: 20, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
78 134 1.00
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.29
Consensus pattern (78 bp):
TTTCAAGAGAAACTATCTCAAGAGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAG
ATAAAATCTTCTA
Found at i:43621 original size:117 final size:118
Alignment explanation
Indices: 43406--43633 Score: 332
Period size: 117 Copynumber: 1.9 Consensus size: 118
43396 AAACAATCTT
* *
43406 AAATATTGGTGTTTCAAGAGAAACTATCTCAAGAGAGATAAAATCTCCTGTTTCGAGGGAAACTA
1 AAATATTGATGTTTCAAGAGAAACTATCTCAAGAGAGATAAAATCTCCTGTTTCGAGAGAAACTA
* *
43471 TCTCAAGCGAGATAAAATCTTCTATTTCAAGGGAAACTATCTCAAGCGAGATA
66 TCTCAAACGAGACAAAATCTTCTATTTCAAGGGAAACTATCTCAAGCGAGATA
* * * * *
43524 AAATATT-ATGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATTTTCTGTTTCGAGAGAAACTA
1 AAATATTGATGTTTCAAGAGAAACTATCTCAAGAGAGATAAAATCTCCTGTTTCGAGAGAAACTA
* * * *
43588 TCTCAAATGAGACAAACTCTTCTATTTCGAGGGAAATTATCTCAAG
66 TCTCAAACGAGACAAAATCTTCTATTTCAAGGGAAACTATCTCAAG
43634 TAAGATACAA
Statistics
Matches: 97, Mismatches: 13, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
117 90 0.93
118 7 0.07
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.29
Consensus pattern (118 bp):
AAATATTGATGTTTCAAGAGAAACTATCTCAAGAGAGATAAAATCTCCTGTTTCGAGAGAAACTA
TCTCAAACGAGACAAAATCTTCTATTTCAAGGGAAACTATCTCAAGCGAGATA
Found at i:43749 original size:76 final size:75
Alignment explanation
Indices: 43652--43813 Score: 243
Period size: 75 Copynumber: 2.1 Consensus size: 75
43642 AATCTTCTTT
* * *
43652 AAAAACAATCTTGAGTGAAATGAAATGTATTCTTTCGAGTTAAAATTGTCTCAAGAAAGACAAAT
1 AAAAACAATCTTGAGTCAAATGAAATGTATTCTTTCGAG-TAAAACTGTCTCAAGAAAGACAAAA
*
43717 TTTGTTTTAAG
65 TCTGTTTTAAG
* * **
43728 AAAAACAATCTTGAGTCAAATGAAATGTCTTCTTTCGAGTAAAACTGTCTTAAGTGAGACAAAAT
1 AAAAACAATCTTGAGTCAAATGAAATGTATTCTTTCGAGTAAAACTGTCTCAAGAAAGACAAAAT
43793 CTGTTTTAAG
66 CTGTTTTAAG
43803 AAAAACAATCT
1 AAAAACAATCT
43814 CAAGTGAGAT
Statistics
Matches: 78, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
75 41 0.53
76 37 0.47
ACGTcount: A:0.41, C:0.12, G:0.15, T:0.32
Consensus pattern (75 bp):
AAAAACAATCTTGAGTCAAATGAAATGTATTCTTTCGAGTAAAACTGTCTCAAGAAAGACAAAAT
CTGTTTTAAG
Found at i:48227 original size:50 final size:50
Alignment explanation
Indices: 48101--48268 Score: 117
Period size: 50 Copynumber: 3.3 Consensus size: 50
48091 GTTGATGTTG
* * * * * * *
48101 TTTTATTTTAATTTAGTCATTGTAATTTCTGATTTAGCTATTATTATTTA
1 TTTTATTGTATTTTAGTCATTATTATTTCTTATTTAGCTATAACTATTTA
* * * * *
48151 ATTT-TTGCATTTTGGTCACTTTTTATTTCTTATTTAGTTACTAACT-TTTA
1 TTTTATTGTATTTTAGTCA-TTATTATTTCTTATTTAGCTA-TAACTATTTA
* **
48201 TTTTATTGTATTTTAGTCATTATTATTT-TATATTTATGCAATTAGGTATTTA
1 TTTTATTGTATTTTAGTCATTATTATTTCT-TATTTA-GCTA-TAACTATTTA
*
48253 TTTTATGTTTATTTTA
1 TTTTAT-TGTATTTTA
48269 TTTTATATTT
Statistics
Matches: 90, Mismatches: 21, Indels: 11
0.74 0.17 0.09
Matches are distributed among these distances:
49 11 0.12
50 41 0.46
51 20 0.22
52 10 0.11
53 8 0.09
ACGTcount: A:0.24, C:0.07, G:0.08, T:0.61
Consensus pattern (50 bp):
TTTTATTGTATTTTAGTCATTATTATTTCTTATTTAGCTATAACTATTTA
Found at i:49759 original size:22 final size:22
Alignment explanation
Indices: 49734--49791 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
49724 AAAAATACAT
*
49734 AAAAATAGAAAAAAAAGCAAA-A
1 AAAAAAAGAAAAAAAAG-AAATA
*
49756 AAAAAAAGAAATAAAAGAAATA
1 AAAAAAAGAAAAAAAAGAAATA
**
49778 AAAAAGGGAAAAAA
1 AAAAAAAGAAAAAA
49792 GAGACGAAAG
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
21 3 0.10
22 27 0.90
ACGTcount: A:0.81, C:0.02, G:0.12, T:0.05
Consensus pattern (22 bp):
AAAAAAAGAAAAAAAAGAAATA
Found at i:51263 original size:75 final size:76
Alignment explanation
Indices: 51174--51335 Score: 236
Period size: 76 Copynumber: 2.1 Consensus size: 76
51164 ATCTCACTTG
* * *
51174 AGATTGTTTTTCTTAAAACAGATTTTGTCTCACTTAAGA-CAGTTTTACTCGAAAGAAGACATTT
1 AGATTGTTTTTCTTAAAACAAAATTTGTCTCACTTAAGATAAGTTTTACTCGAAAGAAGACATTT
*
51238 CATTTGACTCA
66 CATTTCACTCA
** * * *
51249 AGATTGTTTTTCTTAAAACAAAATTTGTCTTTCTTGAGATAATTTTTACTCGAAAGAATACATTT
1 AGATTGTTTTTCTTAAAACAAAATTTGTCTCACTTAAGATAAGTTTTACTCGAAAGAAGACATTT
51314 CATTTCACTCA
66 CATTTCACTCA
51325 AGATTGTTTTT
1 AGATTGTTTTT
51336 AAAGAAGATT
Statistics
Matches: 77, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
75 34 0.44
76 43 0.56
ACGTcount: A:0.31, C:0.14, G:0.12, T:0.43
Consensus pattern (76 bp):
AGATTGTTTTTCTTAAAACAAAATTTGTCTCACTTAAGATAAGTTTTACTCGAAAGAAGACATTT
CATTTCACTCA
Found at i:51398 original size:39 final size:39
Alignment explanation
Indices: 51338--51571 Score: 299
Period size: 39 Copynumber: 6.0 Consensus size: 39
51328 TTGTTTTTAA
** * * *
51338 AGAAGATTTTATCTTACTTGAGATAATTTCTCTCGAAAT
1 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
* * ** * *
51377 AGAAGAGTTTGTCTCATTTGAGATAGTTTCTCTCGAAAT
1 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
*
51416 AGAAAATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
1 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
* * *
51455 ATAATATTTTATCTCGCTTGAGATAGTTTCCCTTGAAAC
1 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
51494 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
1 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
* * *
51533 AGGAGATTTTATCTCTCTTGAGATAGTTTCTCT-GAAAC
1 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
51571 A
1 A
51572 CCAATCTTTA
Statistics
Matches: 174, Mismatches: 21, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
38 6 0.03
39 168 0.97
ACGTcount: A:0.29, C:0.17, G:0.16, T:0.38
Consensus pattern (39 bp):
AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
Found at i:51637 original size:37 final size:37
Alignment explanation
Indices: 51587--51705 Score: 121
Period size: 37 Copynumber: 3.4 Consensus size: 37
51577 CTTTAAGATT
51587 GTTTCCCTTGAAACAAAGTTTTGTCTCTCTTGAGACA
1 GTTTCCCTTGAAACAAAGTTTTGTCTCTCTTGAGACA
**
51624 GTTTCCCTTGAAACACCAA--------TCT-TTGAGATT
1 GTTTCCCTTGAAACA--AAGTTTTGTCTCTCTTGAGACA
*
51654 GTTTCCCTTTAAACAAAGTTTTGTCTCTCTTGAGACA
1 GTTTCCCTTGAAACAAAGTTTTGTCTCTCTTGAGACA
*
51691 ATTTCCCTTGAAACA
1 GTTTCCCTTGAAACA
51706 CCAATATTTG
Statistics
Matches: 64, Mismatches: 7, Indels: 22
0.69 0.08 0.24
Matches are distributed among these distances:
28 2 0.03
30 20 0.31
31 3 0.05
36 3 0.05
37 34 0.53
39 2 0.03
ACGTcount: A:0.26, C:0.23, G:0.13, T:0.38
Consensus pattern (37 bp):
GTTTCCCTTGAAACAAAGTTTTGTCTCTCTTGAGACA
Found at i:51650 original size:30 final size:30
Alignment explanation
Indices: 51616--51735 Score: 82
Period size: 30 Copynumber: 3.8 Consensus size: 30
51606 TTTGTCTCTC
51616 TTGAGACAGTTTCCCTTGAAACACCAATCT
1 TTGAGACAGTTTCCCTTGAAACACCAATCT
** *
51646 TTGAGATTGTTTCCCTTTAAACA--AAGTTTTGTCTCT
1 TTGAGACAGTTTCCCTTGAAACACCAA--------TCT
* *
51682 CTTGAGACAATTTCCCTTGAAACACCAATAT
1 -TTGAGACAGTTTCCCTTGAAACACCAATCT
**
51713 TTGAGATTGTTTCCCTTGAAACA
1 TTGAGACAGTTTCCCTTGAAACA
51736 AATTTTGTCT
Statistics
Matches: 68, Mismatches: 11, Indels: 22
0.67 0.11 0.22
Matches are distributed among these distances:
28 2 0.03
30 40 0.59
31 2 0.03
36 3 0.04
37 19 0.28
39 2 0.03
ACGTcount: A:0.28, C:0.22, G:0.13, T:0.37
Consensus pattern (30 bp):
TTGAGACAGTTTCCCTTGAAACACCAATCT
Found at i:51653 original size:67 final size:67
Alignment explanation
Indices: 51511--51770 Score: 389
Period size: 67 Copynumber: 3.9 Consensus size: 67
51501 TTTATCTCGC
* * * * * *
51511 TTGAGATAGTTTCCCTCGAAACAGGAGATTTTATCTCTCTTGAGATAGTTTCTC-TGAAACACCA
1 TTGAGATTGTTTCCCTTGAAACA-AAG-TTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACACCA
51575 ATCT
64 ATCT
*
51579 TTAAGATTGTTTCCCTTGAAACAAAGTTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACACCAAT
1 TTGAGATTGTTTCCCTTGAAACAAAGTTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACACCAAT
51644 CT
66 CT
* *
51646 TTGAGATTGTTTCCCTTTAAACAAAGTTTTGTCTCTCTTGAGACAATTTCCCTTGAAACACCAAT
1 TTGAGATTGTTTCCCTTGAAACAAAGTTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACACCAAT
*
51711 AT
66 CT
*
51713 TTGAGATTGTTTCCCTTGAAACAAA-TTTTGTCTCCCTTGAGACAGTTTCCCTTGAAAC
1 TTGAGATTGTTTCCCTTGAAACAAAGTTTTGTCTCTCTTGAGACAGTTTCCCTTGAAAC
51771 GAATTTTGTC
Statistics
Matches: 177, Mismatches: 14, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
66 54 0.31
67 103 0.58
68 20 0.11
ACGTcount: A:0.27, C:0.22, G:0.14, T:0.37
Consensus pattern (67 bp):
TTGAGATTGTTTCCCTTGAAACAAAGTTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACACCAAT
CT
Found at i:51760 original size:133 final size:135
Alignment explanation
Indices: 51511--51770 Score: 391
Period size: 133 Copynumber: 1.9 Consensus size: 135
51501 TTTATCTCGC
* * * *
51511 TTGAGATAGTTTCCCTCGAAACAGGAGATTTTATCTCTCTTGAGATAGTTTCTCTGAAACACCAA
1 TTGAGATAGTTTCCCTCGAAACAGAAGATTTTATCTCTCTTGAGACAATTTCCCTGAAACACCAA
* *
51576 TCTTTAAGATTGTTTCCCTTGAAACAAAGTTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACACC
66 TATTTAAGATTGTTTCCCTTGAAACAAAGTTTTGTCTCCCTTGAGACAGTTTCCCTTGAAACACC
51641 AATCT
131 AATCT
* ** *
51646 TTGAGATTGTTTCCCTTTAAACA-AAG-TTTTGTCTCTCTTGAGACAATTTCCCTTGAAACACCA
1 TTGAGATAGTTTCCCTCGAAACAGAAGATTTTATCTCTCTTGAGACAATTTCCC-TGAAACACCA
*
51709 ATATTTGAGATTGTTTCCCTTGAAACAAA-TTTTGTCTCCCTTGAGACAGTTTCCCTTGAAAC
65 ATATTTAAGATTGTTTCCCTTGAAACAAAGTTTTGTCTCCCTTGAGACAGTTTCCCTTGAAAC
51771 GAATTTTGTC
Statistics
Matches: 113, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
133 54 0.48
134 39 0.35
135 20 0.18
ACGTcount: A:0.27, C:0.22, G:0.14, T:0.37
Consensus pattern (135 bp):
TTGAGATAGTTTCCCTCGAAACAGAAGATTTTATCTCTCTTGAGACAATTTCCCTGAAACACCAA
TATTTAAGATTGTTTCCCTTGAAACAAAGTTTTGTCTCCCTTGAGACAGTTTCCCTTGAAACACC
AATCT
Found at i:51776 original size:36 final size:36
Alignment explanation
Indices: 51721--51872 Score: 160
Period size: 36 Copynumber: 4.4 Consensus size: 36
51711 ATTTGAGATT
*
51721 GTTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACA
1 GTTTCCCTTGAAACGAATTTTGTCTCCCTTGAGACA
*
51757 GTTTCCCTTGAAACGAATTTTGTCTCTCTTGAGACA
1 GTTTCCCTTGAAACGAATTTTGTCTCCCTTGAGACA
**
51793 GTTTCCCTTGAAAC--A--CCGATCT---TTGAGATC-
1 GTTTCCCTTGAAACGAATTTTG-TCTCCCTTGAGA-CA
*
51823 GTTTCCCTTG-AACTGAATTTTGTCTCCCTGGAGACA
1 GTTTCCCTTGAAAC-GAATTTTGTCTCCCTTGAGACA
*
51859 GTTTCTCTTGAAAC
1 GTTTCCCTTGAAAC
51873 ACAAAAACTT
Statistics
Matches: 96, Mismatches: 8, Indels: 23
0.76 0.06 0.18
Matches are distributed among these distances:
29 3 0.03
30 16 0.17
31 1 0.01
32 2 0.02
33 6 0.06
34 2 0.02
35 1 0.01
36 62 0.65
37 3 0.03
ACGTcount: A:0.22, C:0.24, G:0.16, T:0.37
Consensus pattern (36 bp):
GTTTCCCTTGAAACGAATTTTGTCTCCCTTGAGACA
Found at i:51798 original size:102 final size:103
Alignment explanation
Indices: 51654--51873 Score: 336
Period size: 102 Copynumber: 2.1 Consensus size: 103
51644 CTTTGAGATT
*
51654 GTTTCCCTTTAAACAAAGTTTTGTCTCTCTTGAGACAATTTCCCTTGAAACACCAATATTTGAGA
1 GTTTCCCTTGAAACAAAGTTTTGTCTCTCTTGAGACAATTTCCCTTGAAACACCAATATTTGAGA
* *
51719 TTGTTTCCCTTGAAAC-AAATTTTGTCTCCCTTGAGACA
66 TCGTTTCCCTTG-AACTAAATTTTGTCTCCCTGGAGACA
* * * *
51757 GTTTCCCTTGAAACGAA-TTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACACCGATCTTTGAGA
1 GTTTCCCTTGAAACAAAGTTTTGTCTCTCTTGAGACAATTTCCCTTGAAACACCAATATTTGAGA
*
51821 TCGTTTCCCTTGAACTGAATTTTGTCTCCCTGGAGACA
66 TCGTTTCCCTTGAACTAAATTTTGTCTCCCTGGAGACA
*
51859 GTTTCTCTTGAAACA
1 GTTTCCCTTGAAACA
51874 CAAAAACTTT
Statistics
Matches: 106, Mismatches: 10, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
101 3 0.03
102 88 0.83
103 15 0.14
ACGTcount: A:0.25, C:0.23, G:0.15, T:0.37
Consensus pattern (103 bp):
GTTTCCCTTGAAACAAAGTTTTGTCTCTCTTGAGACAATTTCCCTTGAAACACCAATATTTGAGA
TCGTTTCCCTTGAACTAAATTTTGTCTCCCTGGAGACA
Found at i:51819 original size:66 final size:66
Alignment explanation
Indices: 51749--51874 Score: 193
Period size: 66 Copynumber: 1.9 Consensus size: 66
51739 TTTGTCTCCC
* *
51749 TTGAGA-CAGTTTCCCTTGAAAC-GAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACACCGA
1 TTGAGATC-GTTTCCCTTG-AACTGAATTTTGTCTCCCTGGAGACAGTTTCCCTTGAAACACCGA
51812 TCT
64 TCT
*
51815 TTGAGATCGTTTCCCTTGAACTGAATTTTGTCTCCCTGGAGACAGTTTCTCTTGAAACAC
1 TTGAGATCGTTTCCCTTGAACTGAATTTTGTCTCCCTGGAGACAGTTTCCCTTGAAACAC
51875 AAAAACTTTG
Statistics
Matches: 55, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
65 3 0.05
66 51 0.93
67 1 0.02
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.36
Consensus pattern (66 bp):
TTGAGATCGTTTCCCTTGAACTGAATTTTGTCTCCCTGGAGACAGTTTCCCTTGAAACACCGATC
T
Found at i:52388 original size:45 final size:44
Alignment explanation
Indices: 52321--52524 Score: 155
Period size: 45 Copynumber: 4.6 Consensus size: 44
52311 AACTTTTTGC
* * * *
52321 TCGATTCTATCACAGAATGAGGTAGATCAGCATCAACATATCGT
1 TCGATTCCATCACAGAAGGAGGTGGATCAGCATCAACATTTCGT
**** *
52365 TCGATTTCCATCACAGAAGGAGGTGGATC-GACATTTTTATTTTCGC
1 TCGA-TTCCATCACAGAAGGAGGTGGATCAG-CATCAACA-TTTCGT
* * * * * * * *
52411 TCAAATCCATCGCAGAAGGAGTTGGATCAACGTCAACTTTTAGT
1 TCGATTCCATCACAGAAGGAGGTGGATCAGCATCAACATTTCGT
* * * *
52455 TCGATTCTATCACAGAATGAGGTAGATCAG---CAACATCTCGT
1 TCGATTCCATCACAGAAGGAGGTGGATCAGCATCAACATTTCGT
52496 TCGATTTCCATCACAGAAGGAGGTGGATC
1 TCGA-TTCCATCACAGAAGGAGGTGGATC
52525 GACATTTTTA
Statistics
Matches: 119, Mismatches: 36, Indels: 12
0.71 0.22 0.07
Matches are distributed among these distances:
41 12 0.10
42 21 0.18
44 31 0.26
45 48 0.40
46 7 0.06
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (44 bp):
TCGATTCCATCACAGAAGGAGGTGGATCAGCATCAACATTTCGT
Found at i:52546 original size:131 final size:131
Alignment explanation
Indices: 52309--52602 Score: 475
Period size: 131 Copynumber: 2.2 Consensus size: 131
52299 AAGAAATTGT
*
52309 TCAACTTTTTGCTCGATTCTATCACAGAATGAGGTAGATCAGCATCAACATATCGTTCGATTTCC
1 TCAACTTTTTGTTCGATTCTATCACAGAATGAGGTAGATCAG-A-CAACATATCGTTCGATTTCC
52374 ATCACAGAAGGAGGTGGATCGACATTTTTATTTTCGCTCAAATCCATCGCAGAAGGAGTTGGATC
64 ATCACAGAAGGAGGTGGATCGACATTTTTATTTTCGCTCAAATCCATCG-AGAAGGAGTTGGATC
52439 AACG
128 AACG
* *
52443 TCAACTTTTAGTTCGATTCTATCACAGAATGAGGTAGATCAG-CAACATCTCGTTCGATTTCCAT
1 TCAACTTTTTGTTCGATTCTATCACAGAATGAGGTAGATCAGACAACATATCGTTCGATTTCCAT
* * *
52507 CACAGAAGGAGGTGGATCGACATTTTTATTTTCGTTCAAATCCATCGAGAAGGAGTTGGGTCAGC
66 CACAGAAGGAGGTGGATCGACATTTTTATTTTCGCTCAAATCCATCGAGAAGGAGTTGGATCAAC
52572 G
131 G
52573 TCAAACTTTTTTGTT-GATTCTATCACAGAA
1 TC-AAC-TTTTTGTTCGATTCTATCACAGAA
52603 GAAGAAGGAG
Statistics
Matches: 151, Mismatches: 7, Indels: 7
0.92 0.04 0.04
Matches are distributed among these distances:
130 19 0.13
131 85 0.56
132 7 0.05
134 40 0.26
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.32
Consensus pattern (131 bp):
TCAACTTTTTGTTCGATTCTATCACAGAATGAGGTAGATCAGACAACATATCGTTCGATTTCCAT
CACAGAAGGAGGTGGATCGACATTTTTATTTTCGCTCAAATCCATCGAGAAGGAGTTGGATCAAC
G
Found at i:52609 original size:51 final size:50
Alignment explanation
Indices: 52554--52652 Score: 155
Period size: 51 Copynumber: 2.0 Consensus size: 50
52544 AAATCCATCG
* *
52554 AGAAGGAGTTGGGTCAGCGTCAAACTTTTTTG-TTGATTCTATCACAGAAGA
1 AGAAGGAGTTGGATCAGCGTC-AA-TTTTTTGCTCGATTCTATCACAGAAGA
52605 AGAAGGAGTTGGATCAGCGTCAATTTTTTGCTCGATTCTATCACAGAA
1 AGAAGGAGTTGGATCAGCGTCAATTTTTTGCTCGATTCTATCACAGAA
52653 TGAGAATGAG
Statistics
Matches: 45, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
49 7 0.16
50 18 0.40
51 20 0.44
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.31
Consensus pattern (50 bp):
AGAAGGAGTTGGATCAGCGTCAATTTTTTGCTCGATTCTATCACAGAAGA
Found at i:52670 original size:50 final size:51
Alignment explanation
Indices: 52567--52670 Score: 133
Period size: 50 Copynumber: 2.1 Consensus size: 51
52557 AGGAGTTGGG
* * *
52567 TCAGCGTCAAACTTTTTTGTTGATTCTATCACAGAAGAAGAAGGAGTTGGA
1 TCAGCGTCAAACTTTTTTGTCGATTCTATCACAGAAGAAGAAGGAGGTAGA
*
52618 TCAGCGTC-AA-TTTTTTGCTCGATTCTATCACAGAATG-AGAATGAGGTAGA
1 TCAGCGTCAAACTTTTTTG-TCGATTCTATCACAGAA-GAAGAAGGAGGTAGA
52668 TCA
1 TCA
52671 ACATCGACAT
Statistics
Matches: 47, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
49 7 0.15
50 31 0.66
51 9 0.19
ACGTcount: A:0.31, C:0.15, G:0.22, T:0.32
Consensus pattern (51 bp):
TCAGCGTCAAACTTTTTTGTCGATTCTATCACAGAAGAAGAAGGAGGTAGA
Found at i:52738 original size:190 final size:181
Alignment explanation
Indices: 52424--52793 Score: 519
Period size: 190 Copynumber: 2.0 Consensus size: 181
52414 AATCCATCGC
* *
52424 AGAAGGAGTTGGATCAACGTCAACTTTTAGTTCGATTCTATCACAGAATGAGGTAGATCAGCAAC
1 AGAAGGAGTTGGATCAACGTCAACTTTTAGCTCGATTCTATCACAGAATGAGGTAGATCAACAAC
* *
52489 ATCTCGTTCGATTTCCATCACAGAAGGAGGTGGATCGACATTTTTATTTTCGTTCAAATCCATCG
66 ATATCGTTCGATTTCCATCACAGAAGGAGGTGGATCGACATTTTTATTTTCGCTCAAATCCATCG
* * * *
52554 -AGAAGGAGTTGGGTCAGCGTCAAACTTTTTT-GTTGATTCTATCACAGAAGA
131 CAGAAGGAGTTGGATCAACGTC-AA-TTTTTTCCTCGATTCTATCACAGAAGA
* * *
52605 AGAAGGAGTTGGATCAGCGTCAATTTTTTGCTCGATTCTATCACAGAATGAGAATGAGGTAGATC
1 AGAAGGAGTTGGATCAACGTCAACTTTTAGCTCGATTCTATCAC------AGAATGAGGTAGATC
*
52670 AACATCGACATATCGTTCGATTTCCATCACAGAAGGAGGTGGATCGACATTTTTATTTTTGCTCA
60 AACA---ACATATCGTTCGATTTCCATCACAGAAGGAGGTGGATCGACATTTTTATTTTCGCTCA
52735 AATCCATCGCAGAAGGAGTTGGATCAACGTCAATTTTTTCCTCGATTCTATCACAGAAG
122 AATCCATCGCAGAAGGAGTTGGATCAACGTCAATTTTTTCCTCGATTCTATCACAGAAG
52794 GAGGTAGATC
Statistics
Matches: 166, Mismatches: 12, Indels: 13
0.87 0.06 0.07
Matches are distributed among these distances:
181 40 0.24
187 18 0.11
189 6 0.04
190 83 0.50
191 19 0.11
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (181 bp):
AGAAGGAGTTGGATCAACGTCAACTTTTAGCTCGATTCTATCACAGAATGAGGTAGATCAACAAC
ATATCGTTCGATTTCCATCACAGAAGGAGGTGGATCGACATTTTTATTTTCGCTCAAATCCATCG
CAGAAGGAGTTGGATCAACGTCAATTTTTTCCTCGATTCTATCACAGAAGA
Found at i:52891 original size:105 final size:105
Alignment explanation
Indices: 52709--52919 Score: 368
Period size: 105 Copynumber: 2.0 Consensus size: 105
52699 CAGAAGGAGG
* *
52709 TGGATCGACATTTTTATTTTTGCTCAAATCCATCGCAGAAGGAGTTGGATCAACGTCAATTTTTT
1 TGGATCGACATTTTTATTTTTGCTCAAATCAATCGCAGAAGGAGTTGGATCAACGTCAACTTTTT
*
52774 CCTCGATTCTATCACAGAAGGAGGTAGATCAGCATCGACA
66 CCTCGATTCTATCACAAAAGGAGGTAGATCAGCATCGACA
*
52814 TGGATCGACATTTTTATTTTTGCTCAAATCAATCGCAGAAGGAGTTGGATCAGCGTCAACTTTTT
1 TGGATCGACATTTTTATTTTTGCTCAAATCAATCGCAGAAGGAGTTGGATCAACGTCAACTTTTT
* *
52879 GCTCGATTCTATCACAAAATGAGGTAGATCAGCATCGACA
66 CCTCGATTCTATCACAAAAGGAGGTAGATCAGCATCGACA
52919 T
1 T
52920 ATCGTTCGAT
Statistics
Matches: 100, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
105 100 1.00
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.32
Consensus pattern (105 bp):
TGGATCGACATTTTTATTTTTGCTCAAATCAATCGCAGAAGGAGTTGGATCAACGTCAACTTTTT
CCTCGATTCTATCACAAAAGGAGGTAGATCAGCATCGACA
Found at i:52975 original size:51 final size:51
Alignment explanation
Indices: 52899--52998 Score: 200
Period size: 51 Copynumber: 2.0 Consensus size: 51
52889 ATCACAAAAT
52899 GAGGTAGATCAGCATCGACATATCGTTCGATTTCCATCACAGAAGGAGAAG
1 GAGGTAGATCAGCATCGACATATCGTTCGATTTCCATCACAGAAGGAGAAG
52950 GAGGTAGATCAGCATCGACATATCGTTCGATTTCCATCACAGAAGGAGA
1 GAGGTAGATCAGCATCGACATATCGTTCGATTTCCATCACAGAAGGAGA
52999 TGGATCGACA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 49 1.00
ACGTcount: A:0.33, C:0.20, G:0.25, T:0.22
Consensus pattern (51 bp):
GAGGTAGATCAGCATCGACATATCGTTCGATTTCCATCACAGAAGGAGAAG
Found at i:53094 original size:44 final size:44
Alignment explanation
Indices: 53027--53532 Score: 203
Period size: 44 Copynumber: 11.5 Consensus size: 44
53017 TTCGCTCAAA
* *
53027 TCCATCGCAGAAGGAGTTGGATCAGCGTCAACTTTTAGTTTGAT
1 TCCATCGCAGAAGGAGGTGGATCAGCGTCAACTTTTAGTTCGAT
* * * * *
53071 TCTATCGCAGAAGGAGGTAGATCA--G-CAACATCTCGTTCGAT
1 TCCATCGCAGAAGGAGGTGGATCAGCGTCAACTTTTAGTTCGAT
* * ** * * * *
53112 TCCATCACAGAAGGAGGTGGATC-GACATTTTTA-TTTTCGCTCAAA
1 TCCATCGCAGAAGGAGGTGGATCAG-C--GTCAACTTTTAGTTCGAT
* * * *
53157 TCCATCGCAGAAGGAGTTGGATCAGCTTCAACTTTTTGCTCGAT
1 TCCATCGCAGAAGGAGGTGGATCAGCGTCAACTTTTAGTTCGAT
* ** * * * * * *
53201 TCTATCATAGAAGGAGGTAGATCAGCATCGACATATCGTTCGATT
1 TCCATCGCAGAAGGAGGTGGATCAGCGTCAACTTTTAGTTCGA-T
* * * ** * * * *
53246 TCCATCACAGAAGGAGGTGAATC-GACATTTTTA-TTTTCGCTCAAA
1 TCCATCGCAGAAGGAGGTGGATCAG-C--GTCAACTTTTAGTTCGAT
* * *
53291 TCCATCGCAGAAGGAGTTGGATTAGCGTCAACTTTTAGCTCGAT
1 TCCATCGCAGAAGGAGGTGGATCAGCGTCAACTTTTAGTTCGAT
* * * *
53335 TCTATCGCAGAAGGAGGTAGATCA--G-CAA-TATCTCGTTCGAT
1 TCCATCGCAGAAGGAGGTGGATCAGCGTCAACT-TTTAGTTCGAT
* * ** * * * *
53376 TCCATCACAGAAGGAGGTGGATC-GACATTTTTA-TTTTTGCTCAAA
1 TCCATCGCAGAAGGAGGTGGATCAG-C--GTCAACTTTTAGTTCGAT
* **
53421 TCCATCGTAGAAGGAATTGGATCAGCGTCAACTTTTAGTTCGAT
1 TCCATCGCAGAAGGAGGTGGATCAGCGTCAACTTTTAGTTCGAT
** * * * * * * *
53465 TTTATCACAGAAAGAGGTAGATCAGC-ACACACATCTCGTTTCGAT
1 TCCATCGCAGAAGGAGGTGGATCAGCGTCA-ACTTTTAG-TTCGAT
* *
53510 TCCATCACAGAATGAGGTGGATC
1 TCCATCGCAGAAGGAGGTGGATC
53533 GACATTTTCG
Statistics
Matches: 334, Mismatches: 103, Indels: 49
0.69 0.21 0.10
Matches are distributed among these distances:
40 1 0.00
41 63 0.19
42 2 0.01
43 9 0.03
44 123 0.37
45 121 0.36
46 13 0.04
47 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.29
Consensus pattern (44 bp):
TCCATCGCAGAAGGAGGTGGATCAGCGTCAACTTTTAGTTCGAT
Found at i:53312 original size:134 final size:131
Alignment explanation
Indices: 52945--53540 Score: 917
Period size: 130 Copynumber: 4.5 Consensus size: 131
52935 TCACAGAAGG
* *
52945 AGAAGGAGGTAGATCAGCATCGACATATCGTTCGATTTCCATCACAGAAGGAGATGGATCGACAT
1 AGAAGGAGGTAGATCAGCA-C-ACATCTCGTTCGA-TTCCATCACAGAAGGAGGTGGATCGACAT
* *
53010 TTTTATTTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAGCGTCAACTTTTAGTTTGATTCTA
63 TTTTATTTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAGCGTCAACTTTTAGCTCGATTCTA
*
53075 TCGC
128 TCAC
53079 AGAAGGAGGTAGATCAGCA-ACATCTCGTTCGATTCCATCACAGAAGGAGGTGGATCGACATTTT
1 AGAAGGAGGTAGATCAGCACACATCTCGTTCGATTCCATCACAGAAGGAGGTGGATCGACATTTT
* *
53143 TATTTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAGCTTCAACTTTTTGCTCGATTCTATCA
66 TATTTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAGCGTCAACTTTTAGCTCGATTCTATCA
*
53208 T
131 C
* *
53209 AGAAGGAGGTAGATCAGCATCGACATATCGTTCGATTTCCATCACAGAAGGAGGTGAATCGACAT
1 AGAAGGAGGTAGATCAGCA-C-ACATCTCGTTCGA-TTCCATCACAGAAGGAGGTGGATCGACAT
*
53274 TTTTATTTTCGCTCAAATCCATCGCAGAAGGAGTTGGATTAGCGTCAACTTTTAGCTCGATTCTA
63 TTTTATTTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAGCGTCAACTTTTAGCTCGATTCTA
*
53339 TCGC
128 TCAC
*
53343 AGAAGGAGGTAGATCAGCA-ATATCTCGTTCGATTCCATCACAGAAGGAGGTGGATCGACATTTT
1 AGAAGGAGGTAGATCAGCACACATCTCGTTCGATTCCATCACAGAAGGAGGTGGATCGACATTTT
* * * * *
53407 TATTTTTGCTCAAATCCATCGTAGAAGGAATTGGATCAGCGTCAACTTTTAGTTCGATTTTATCA
66 TATTTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAGCGTCAACTTTTAGCTCGATTCTATCA
53472 C
131 C
* *
53473 AGAAAGAGGTAGATCAGCACACACATCTCGTTTCGATTCCATCACAGAATGAGGTGGATCGACAT
1 AGAAGGAGGTAGATCAG--CACACATCTCG-TTCGATTCCATCACAGAAGGAGGTGGATCGACAT
53538 TTT
63 TTT
53541 CGATTCATCA
Statistics
Matches: 426, Mismatches: 28, Indels: 16
0.91 0.06 0.03
Matches are distributed among these distances:
130 216 0.51
131 23 0.05
132 2 0.00
133 19 0.04
134 166 0.39
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.30
Consensus pattern (131 bp):
AGAAGGAGGTAGATCAGCACACATCTCGTTCGATTCCATCACAGAAGGAGGTGGATCGACATTTT
TATTTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAGCGTCAACTTTTAGCTCGATTCTATCA
C
Found at i:53420 original size:264 final size:264
Alignment explanation
Indices: 52945--53540 Score: 998
Period size: 264 Copynumber: 2.3 Consensus size: 264
52935 TCACAGAAGG
*
52945 AGAAGGAGGTAGATCAGCATCGACATATCGTTCGATTTCCATCACAGAAGGAGATGGATCGACAT
1 AGAAGGAGGTAGATCAGCATCGACATATCGTTCGATTTCCATCACAGAAGGAGGTGGATCGACAT
* *
53010 TTTTATTTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAGCGTCAACTTTTAGTTTGATTCTA
66 TTTTATTTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAGCGTCAACTTTTAGCTCGATTCTA
53075 TCGCAGAAGGAGGTAGATCAGCAACATCTCGTTCGATTCCATCACAGAAGGAGGTGGATCGACAT
131 TCGCAGAAGGAGGTAGATCAGCAACATCTCGTTCGATTCCATCACAGAAGGAGGTGGATCGACAT
* * *
53140 TTTTATTTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAGCTTCAACTTTTTGCTCGATTCTA
196 TTTTATTTTCGCTCAAATCCATCGCAGAAGGAATTGGATCAGCGTCAACTTTTAGCTCGATTCTA
*
53205 TCAT
261 TCAC
*
53209 AGAAGGAGGTAGATCAGCATCGACATATCGTTCGATTTCCATCACAGAAGGAGGTGAATCGACAT
1 AGAAGGAGGTAGATCAGCATCGACATATCGTTCGATTTCCATCACAGAAGGAGGTGGATCGACAT
*
53274 TTTTATTTTCGCTCAAATCCATCGCAGAAGGAGTTGGATTAGCGTCAACTTTTAGCTCGATTCTA
66 TTTTATTTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAGCGTCAACTTTTAGCTCGATTCTA
*
53339 TCGCAGAAGGAGGTAGATCAGCAATATCTCGTTCGATTCCATCACAGAAGGAGGTGGATCGACAT
131 TCGCAGAAGGAGGTAGATCAGCAACATCTCGTTCGATTCCATCACAGAAGGAGGTGGATCGACAT
* * * *
53404 TTTTATTTTTGCTCAAATCCATCGTAGAAGGAATTGGATCAGCGTCAACTTTTAGTTCGATTTTA
196 TTTTATTTTCGCTCAAATCCATCGCAGAAGGAATTGGATCAGCGTCAACTTTTAGCTCGATTCTA
53469 TCAC
261 TCAC
* * * *
53473 AGAAAGAGGTAGATCAGCA-CACACATCTCGTTTCGA-TTCCATCACAGAATGAGGTGGATCGAC
1 AGAAGGAGGTAGATCAGCATC-GACATATCG-TTCGATTTCCATCACAGAAGGAGGTGGATCGAC
53536 ATTTT
64 ATTTT
53541 CGATTCATCA
Statistics
Matches: 311, Mismatches: 19, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
263 1 0.00
264 305 0.98
265 5 0.02
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.30
Consensus pattern (264 bp):
AGAAGGAGGTAGATCAGCATCGACATATCGTTCGATTTCCATCACAGAAGGAGGTGGATCGACAT
TTTTATTTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAGCGTCAACTTTTAGCTCGATTCTA
TCGCAGAAGGAGGTAGATCAGCAACATCTCGTTCGATTCCATCACAGAAGGAGGTGGATCGACAT
TTTTATTTTCGCTCAAATCCATCGCAGAAGGAATTGGATCAGCGTCAACTTTTAGCTCGATTCTA
TCAC
Found at i:59050 original size:18 final size:20
Alignment explanation
Indices: 59018--59087 Score: 72
Period size: 22 Copynumber: 3.5 Consensus size: 20
59008 AGGATATAAC
*
59018 AAAAAAGACATAAAAATAGA
1 AAAAAAGACATAAAAAGAGA
59038 AAAAAAG-CA-AAAAAGAGA
1 AAAAAAGACATAAAAAGAGA
* *
59056 AATAAAAGAAATAAAAAAGGGA
1 AA-AAAAGACAT-AAAAAGAGA
59078 AAAAAGAGAC
1 AAAAA-AGAC
59088 GAAAGAAAGA
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
18 10 0.24
19 7 0.17
20 8 0.20
21 3 0.07
22 13 0.32
ACGTcount: A:0.74, C:0.04, G:0.16, T:0.06
Consensus pattern (20 bp):
AAAAAAGACATAAAAAGAGA
Found at i:60553 original size:75 final size:76
Alignment explanation
Indices: 60464--60623 Score: 223
Period size: 76 Copynumber: 2.1 Consensus size: 76
60454 ATCTCACTTG
* * *
60464 AGATTGTTTTTCTTAAAACAGATTTTGTCTCACTTAAGACAA-TTTTACTCGAAAGAAGACATTT
1 AGATTGTTTCTCTTAAAACAAAATTTGTCTCACTTAAGACAATTTTTACTCGAAAGAAGACATTT
*
60528 CATTTGACTCA
66 CATTTCACTCA
** * * * *
60539 AGATTGTTTCTCTTAAAACAAAATTTGTCTTTCTTGAGATAATTTTTACTCGAAATAATACATTT
1 AGATTGTTTCTCTTAAAACAAAATTTGTCTCACTTAAGACAATTTTTACTCGAAAGAAGACATTT
60604 CATTTCACTCA
66 CATTTCACTCA
60615 AGATTGTTT
1 AGATTGTTT
60624 TTAAAGAAGA
Statistics
Matches: 74, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
75 35 0.47
76 39 0.53
ACGTcount: A:0.33, C:0.15, G:0.11, T:0.42
Consensus pattern (76 bp):
AGATTGTTTCTCTTAAAACAAAATTTGTCTCACTTAAGACAATTTTTACTCGAAAGAAGACATTT
CATTTCACTCA
Found at i:60689 original size:39 final size:39
Alignment explanation
Indices: 60628--60862 Score: 299
Period size: 39 Copynumber: 6.0 Consensus size: 39
60618 TTGTTTTTAA
** * *
60628 AGAAGATTTTATCTTACATGAGATAATTTCCCTCGAAAC
1 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
* * ** * *
60667 AGAAGAATTTGTCTCATTTGAGATAGTTTCTCTCGAAAT
1 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
*
60706 AGAAAATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
1 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
* * *
60745 ATAATATTTTATCTCGCTTGAGATAGTTTCCCTTGAAAC
1 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
*
60784 AAAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
1 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
* * * *
60823 AGGAGATTTTATCTCTCTTGAGATAGTTTCTCTTGAAAC
1 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
60862 A
1 A
60863 CCAATCTTTA
Statistics
Matches: 170, Mismatches: 26, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 170 1.00
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.37
Consensus pattern (39 bp):
AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
Found at i:60919 original size:67 final size:67
Alignment explanation
Indices: 60801--61044 Score: 341
Period size: 67 Copynumber: 3.7 Consensus size: 67
60791 TTTATCTCGC
* * * * * *
60801 TTGAGATAGTTTCCCTCGAAACAGGAGATTTTATCTCTCTTGAGATAGTTTCTCTTGAAACACCA
1 TTGAGATTGTTTCCCTTGAAACA-AAG-TTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACACCA
60866 ATCT
64 ATCT
* *
60870 TTAAGATTGTTTCCCTTGAAAAAAAGTTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACACCAAT
1 TTGAGATTGTTTCCCTTGAAACAAAGTTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACACCAAT
60935 CT
66 CT
*
60937 TTGAGATTGTTTCCCTTGAAACAAAG--TTGTCTCTCTTGAGACTGTTTCCCTTGAAACACCAAT
1 TTGAGATTGTTTCCCTTGAAACAAAGTTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACACCAAT
*
61000 AT
66 CT
* *
61002 TTGAGATTATTTCCCTTGAAACAAA-TTTTGTCTCCCTTGAGAC
1 TTGAGATTGTTTCCCTTGAAACAAAGTTTTGTCTCTCTTGAGAC
61045 GAATTTTGTC
Statistics
Matches: 159, Mismatches: 14, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
65 61 0.38
66 15 0.09
67 62 0.39
68 2 0.01
69 19 0.12
ACGTcount: A:0.27, C:0.21, G:0.15, T:0.37
Consensus pattern (67 bp):
TTGAGATTGTTTCCCTTGAAACAAAGTTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACACCAAT
CT
Found at i:60941 original size:30 final size:30
Alignment explanation
Indices: 60907--61024 Score: 98
Period size: 30 Copynumber: 3.8 Consensus size: 30
60897 TTTGTCTCTC
60907 TTGAGACAGTTTCCCTTGAAACACCAATCT
1 TTGAGACAGTTTCCCTTGAAACACCAATCT
**
60937 TTGAGATTGTTTCCCTTGAAACA--AAGTTGTCTCT
1 TTGAGACAGTTTCCCTTGAAACACCAA------TCT
* *
60971 CTTGAGACTGTTTCCCTTGAAACACCAATAT
1 -TTGAGACAGTTTCCCTTGAAACACCAATCT
*
61002 TTGAGATTA-TTTCCCTTGAAACA
1 TTGAGA-CAGTTTCCCTTGAAACA
61025 AATTTTGTCT
Statistics
Matches: 72, Mismatches: 6, Indels: 20
0.73 0.06 0.20
Matches are distributed among these distances:
28 2 0.03
30 41 0.57
31 2 0.03
34 3 0.04
35 22 0.31
37 2 0.03
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.36
Consensus pattern (30 bp):
TTGAGACAGTTTCCCTTGAAACACCAATCT
Found at i:60983 original size:35 final size:35
Alignment explanation
Indices: 60877--60994 Score: 124
Period size: 35 Copynumber: 3.5 Consensus size: 35
60867 TCTTTAAGAT
*
60877 TGTTTCCCTTGAAAAAAAGTTTTGTCTCTCTTGAGAC
1 TGTTTCCCTTGAAACAAAG--TTGTCTCTCTTGAGAC
* *
60914 AGTTTCCCTTGAAACACCAA------TCT-TTGAGAT
1 TGTTTCCCTTGAAACA--AAGTTGTCTCTCTTGAGAC
60944 TGTTTCCCTTGAAACAAAGTTGTCTCTCTTGAGAC
1 TGTTTCCCTTGAAACAAAGTTGTCTCTCTTGAGAC
60979 TGTTTCCCTTGAAACA
1 TGTTTCCCTTGAAACA
60995 CCAATATTTG
Statistics
Matches: 67, Mismatches: 5, Indels: 20
0.73 0.05 0.22
Matches are distributed among these distances:
28 2 0.03
30 21 0.31
31 3 0.04
34 3 0.04
35 22 0.33
37 14 0.21
39 2 0.03
ACGTcount: A:0.25, C:0.22, G:0.15, T:0.37
Consensus pattern (35 bp):
TGTTTCCCTTGAAACAAAGTTGTCTCTCTTGAGAC
Found at i:61005 original size:65 final size:65
Alignment explanation
Indices: 60834--61044 Score: 307
Period size: 65 Copynumber: 3.2 Consensus size: 65
60824 GGAGATTTTA
* * *
60834 TCTCTCTTGAGA-TAGTTTCTCTTGAAACACCAATCTTTAAGATTGTTTCCCTTGAAAAAAAGTT
1 TCTCTCTTGAGACT-GTTTCCCTTGAAACACCAATCTTTGAGATTGTTTCCCTTGAAACAAAG--
60898 TTG
63 TTG
*
60901 TCTCTCTTGAGACAGTTTCCCTTGAAACACCAATCTTTGAGATTGTTTCCCTTGAAACAAAGTTG
1 TCTCTCTTGAGACTGTTTCCCTTGAAACACCAATCTTTGAGATTGTTTCCCTTGAAACAAAGTTG
* * *
60966 TCTCTCTTGAGACTGTTTCCCTTGAAACACCAATATTTGAGATTATTTCCCTTGAAACAAATTTT
1 TCTCTCTTGAGACTGTTTCCCTTGAAACACCAATCTTTGAGATTGTTTCCCTTGAAACAAA-GTT
61031 G
65 G
*
61032 TCTCCCTTGAGAC
1 TCTCTCTTGAGAC
61045 GAATTTTGTC
Statistics
Matches: 133, Mismatches: 9, Indels: 5
0.90 0.06 0.03
Matches are distributed among these distances:
65 61 0.46
66 15 0.11
67 57 0.43
ACGTcount: A:0.27, C:0.22, G:0.14, T:0.38
Consensus pattern (65 bp):
TCTCTCTTGAGACTGTTTCCCTTGAAACACCAATCTTTGAGATTGTTTCCCTTGAAACAAAGTTG
Found at i:61060 original size:87 final size:87
Alignment explanation
Indices: 60963--61131 Score: 259
Period size: 87 Copynumber: 1.9 Consensus size: 87
60953 TGAAACAAAG
* *
60963 TTGTCTCTCTTGAGACTGTTTCCCTTGAAACACCAATATTTGAGATTATTTCCCTTGAAAC-AAA
1 TTGTCTCTCTTGAGACAGTTTCCCTTGAAACACCAATATTTGAGATCATTTCCCTTG-AACTAAA
*
61027 TTTTGTCTCCCTTGAGACGAATT
65 TTTTGTCTCCCTGGAGACGAATT
* * * *
61050 TTGTCTCTCTTGAGACAGTTTCCCTTGAAACACCGATCTTTGAGATCGTTTCCCTTGAACTGAAT
1 TTGTCTCTCTTGAGACAGTTTCCCTTGAAACACCAATATTTGAGATCATTTCCCTTGAACTAAAT
61115 TTTGTCTCCCTGGAGAC
66 TTTGTCTCCCTGGAGAC
61132 AGTTTCTCTT
Statistics
Matches: 74, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
86 3 0.04
87 71 0.96
ACGTcount: A:0.22, C:0.24, G:0.16, T:0.38
Consensus pattern (87 bp):
TTGTCTCTCTTGAGACAGTTTCCCTTGAAACACCAATATTTGAGATCATTTCCCTTGAACTAAAT
TTTGTCTCCCTGGAGACGAATT
Found at i:61063 original size:21 final size:21
Alignment explanation
Indices: 61013--61066 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
61003 TGAGATTATT
*
61013 TCCCTTGAAACAAATTTTGTC
1 TCCCTTGAGACAAATTTTGTC
*
61034 TCCCTTGAGACGAATTTTGTC
1 TCCCTTGAGACAAATTTTGTC
*
61055 TCTCTTGAGACA
1 TCCCTTGAGACA
61067 GTTTCCCTTG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.37
Consensus pattern (21 bp):
TCCCTTGAGACAAATTTTGTC
Found at i:61662 original size:45 final size:44
Alignment explanation
Indices: 61595--61798 Score: 148
Period size: 45 Copynumber: 4.6 Consensus size: 44
61585 AACTTTTTGC
* * * *
61595 TCGATTCTATCACAGAATGAGGTAGATCAGCATCAACATATCGT
1 TCGATTCCATCACAGAAGGAGGTGGATCAGCATCAACATTTCGT
**** *
61639 TCGATTTCCATCACAGAAGGAGGTGGATC-GACATTTTTATTTTCGC
1 TCGA-TTCCATCACAGAAGGAGGTGGATCAG-CATCAACA-TTTCGT
* * * * * * * *
61685 TCAAATCCATCGCAGAAGGAGTTGGATCAACGTCAACTTTTAGT
1 TCGATTCCATCACAGAAGGAGGTGGATCAGCATCAACATTTCGT
* * *
61729 TCGATTCTATCACAGAATGAGGTAGG-TCAG---CAACATCTCGT
1 TCGATTCCATCACAGAAGGAGGT-GGATCAGCATCAACATTTCGT
61770 TCGATTTCCATCACAGAAGGAGGTGGATC
1 TCGA-TTCCATCACAGAAGGAGGTGGATC
61799 GATATTTTTA
Statistics
Matches: 119, Mismatches: 34, Indels: 16
0.70 0.20 0.09
Matches are distributed among these distances:
41 14 0.12
42 19 0.16
44 29 0.24
45 50 0.42
46 7 0.06
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (44 bp):
TCGATTCCATCACAGAAGGAGGTGGATCAGCATCAACATTTCGT
Found at i:61820 original size:131 final size:130
Alignment explanation
Indices: 61583--61875 Score: 453
Period size: 131 Copynumber: 2.2 Consensus size: 130
61573 AAGAAATTGT
*
61583 TCAACTTTTTGCTCGATTCTATCACAGAATGAGGTAGATCAGCATCAACATATCGTTCGATTTCC
1 TCAAC-TTTTGTTCGATTCTATCACAGAATGAGGTAGATCAG-A-CAACATATCGTTCGATTTCC
61648 ATCACAGAAGGAGGTGGATCGACATTTTTATTTTCGCTCAAATCCATCGCAGAAGGAGTTGGATC
63 ATCACAGAAGGAGGTGGATCGACATTTTTATTTTCGCTCAAATCCATCG-AGAAGGAGTTGGATC
61713 AACG
127 AACG
* *
61717 TCAACTTTTAGTTCGATTCTATCACAGAATGAGGTAGGTCAG-CAACATCTCGTTCGATTTCCAT
1 TCAACTTTT-GTTCGATTCTATCACAGAATGAGGTAGATCAGACAACATATCGTTCGATTTCCAT
* * * *
61781 CACAGAAGGAGGTGGATCGATATTTTTATTTTCGCTCAAATCCATCGAGTAGGAGTTGGGTCAGC
65 CACAGAAGGAGGTGGATCGACATTTTTATTTTCGCTCAAATCCATCGAGAAGGAGTTGGATCAAC
61846 G
130 G
*
61847 TCAACTTTTTTGTCGATTCTATCACAGAA
1 TCAACTTTTGT-TCGATTCTATCACAGAA
61876 GAAGAAGGAG
Statistics
Matches: 149, Mismatches: 8, Indels: 8
0.90 0.05 0.05
Matches are distributed among these distances:
129 1 0.01
130 42 0.28
131 67 0.45
133 4 0.03
134 35 0.23
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32
Consensus pattern (130 bp):
TCAACTTTTGTTCGATTCTATCACAGAATGAGGTAGATCAGACAACATATCGTTCGATTTCCATC
ACAGAAGGAGGTGGATCGACATTTTTATTTTCGCTCAAATCCATCGAGAAGGAGTTGGATCAACG
Found at i:61885 original size:50 final size:50
Alignment explanation
Indices: 61831--61925 Score: 165
Period size: 50 Copynumber: 1.9 Consensus size: 50
61821 TCCATCGAGT
*
61831 AGGAGTTGGGTCAGCGTCAACTTTTTTG-TCGATTCTATCACAGAAGAAGA
1 AGGAGTTGGATCAGCGTCAA-TTTTTTGCTCGATTCTATCACAGAAGAAGA
61881 AGGAGTTGGATCAGCGTCAATTTTTTGCTCGATTCTATCACAGAA
1 AGGAGTTGGATCAGCGTCAATTTTTTGCTCGATTCTATCACAGAA
61926 TGAGAATGAG
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
49 7 0.16
50 36 0.84
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.32
Consensus pattern (50 bp):
AGGAGTTGGATCAGCGTCAATTTTTTGCTCGATTCTATCACAGAAGAAGA
Found at i:61943 original size:50 final size:50
Alignment explanation
Indices: 61841--61943 Score: 147
Period size: 50 Copynumber: 2.1 Consensus size: 50
61831 AGGAGTTGGG
* *
61841 TCAGCGTCAACTTTTTTGTCGATTCTATCACAGAAGAAGAAGGAGTTGGA
1 TCAGCGTCAACTTTTTTGTCGATTCTATCACAGAAGAAGAAGGAGGTAGA
*
61891 TCAGCGTCAA-TTTTTTGCTCGATTCTATCACAGAATG-AGAATGAGGTAGA
1 TCAGCGTCAACTTTTTTG-TCGATTCTATCACAGAA-GAAGAAGGAGGTAGA
61941 TCA
1 TCA
61944 ACATCGACAT
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
49 7 0.15
50 40 0.83
51 1 0.02
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.31
Consensus pattern (50 bp):
TCAGCGTCAACTTTTTTGTCGATTCTATCACAGAAGAAGAAGGAGGTAGA
Found at i:62009 original size:189 final size:181
Alignment explanation
Indices: 61698--62066 Score: 519
Period size: 189 Copynumber: 2.0 Consensus size: 181
61688 AATCCATCGC
* *
61698 AGAAGGAGTTGGATCAACGTCAACTTTTAGTTCGATTCTATCACAGAATGAGGTAGGTCAGCAAC
1 AGAAGGAGTTGGATCAACGTCAACTTTTAGCTCGATTCTATCACAGAATGAGATAGGTCAGCAAC
*
61763 ATCTCGTTCGATTTCCATCACAGAAGGAGGTGGATCGATATTTTTATTTTCGCTCAAATCCATCG
66 ATCTCGTTCGATTTCCATCACAGAAGGAGGTGGATCGACATTTTTATTTTCGCTCAAATCCATCG
* * * *
61828 -AGTAGGAGTTGGGTCAGCGTCAACTTTTTT-GTCGATTCTATCACAGAAGA
131 CAGAAGGAGTTGGATCAACGTCAA-TTTTTTCCTCGATTCTATCACAGAAGA
* * *
61878 AGAAGGAGTTGGATCAGCGTCAATTTTTTGCTCGATTCTATCACAGAATGAGAATGAGGT-AGAT
1 AGAAGGAGTTGGATCAACGTCAACTTTTAGCTCGATTCTATCACAGAATGAG-AT-AGGTCAG--
*
61942 CAACATCGACATATCGTTCGATTTCCATCACAGAAGGAGGTGGATCGACATTTTTATTTTTGCTC
62 CAACAT---C---TCGTTCGATTTCCATCACAGAAGGAGGTGGATCGACATTTTTATTTTCGCTC
62007 AAATCCATCGCAGAAGGAGTTGGATCAACGTCAATTTTTTCCTCGATTCTATCACAGAAG
121 AAATCCATCGCAGAAGGAGTTGGATCAACGTCAATTTTTTCCTCGATTCTATCACAGAAG
62067 GAGGTAGATC
Statistics
Matches: 166, Mismatches: 11, Indels: 14
0.87 0.06 0.07
Matches are distributed among these distances:
180 48 0.29
181 3 0.02
182 4 0.02
183 6 0.04
186 1 0.01
189 66 0.40
190 38 0.23
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (181 bp):
AGAAGGAGTTGGATCAACGTCAACTTTTAGCTCGATTCTATCACAGAATGAGATAGGTCAGCAAC
ATCTCGTTCGATTTCCATCACAGAAGGAGGTGGATCGACATTTTTATTTTCGCTCAAATCCATCG
CAGAAGGAGTTGGATCAACGTCAATTTTTTCCTCGATTCTATCACAGAAGA
Found at i:62164 original size:105 final size:105
Alignment explanation
Indices: 61982--62192 Score: 368
Period size: 105 Copynumber: 2.0 Consensus size: 105
61972 CAGAAGGAGG
* * *
61982 TGGATCGACATTTTTATTTTTGCTCAAATCCATCGCAGAAGGAGTTGGATCAACGTCAATTTTTT
1 TGGATCGACATTTTTATTTTCGCTCAAATCAATCGCAGAAGGAGTTGGATCAACGTCAACTTTTT
62047 CCTCGATTCTATCACAGAAGGAGGTAGATCAGCATCGACA
66 CCTCGATTCTATCACAGAAGGAGGTAGATCAGCATCGACA
*
62087 TGGATCGACATTTTTATTTTCGCTCAAATCAATCGCAGAAGGAGTTGGATCAGCGTCAACTTTTT
1 TGGATCGACATTTTTATTTTCGCTCAAATCAATCGCAGAAGGAGTTGGATCAACGTCAACTTTTT
* *
62152 GCTCGATTCTATCACAGAATGAGGTAGATCAGCATCGACA
66 CCTCGATTCTATCACAGAAGGAGGTAGATCAGCATCGACA
62192 T
1 T
62193 ATCGTTCGAT
Statistics
Matches: 100, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
105 100 1.00
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.31
Consensus pattern (105 bp):
TGGATCGACATTTTTATTTTCGCTCAAATCAATCGCAGAAGGAGTTGGATCAACGTCAACTTTTT
CCTCGATTCTATCACAGAAGGAGGTAGATCAGCATCGACA
Found at i:62248 original size:51 final size:51
Alignment explanation
Indices: 62167--62271 Score: 192
Period size: 51 Copynumber: 2.1 Consensus size: 51
62157 ATTCTATCAC
*
62167 AGAATGAGGTAGATCAGCATCGACATATCGTTCGATTTCCATCACAGAAAG
1 AGAAGGAGGTAGATCAGCATCGACATATCGTTCGATTTCCATCACAGAAAG
*
62218 AGAAGGAGGTAGATCAGCATCGACATATCGTTCGATTTCCATCACAGAAGG
1 AGAAGGAGGTAGATCAGCATCGACATATCGTTCGATTTCCATCACAGAAAG
62269 AGA
1 AGA
62272 TGGATCGACA
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.35, C:0.19, G:0.24, T:0.22
Consensus pattern (51 bp):
AGAAGGAGGTAGATCAGCATCGACATATCGTTCGATTTCCATCACAGAAAG
Found at i:62367 original size:44 final size:44
Alignment explanation
Indices: 62103--62729 Score: 272
Period size: 44 Copynumber: 14.1 Consensus size: 44
62093 GACATTTTTA
* * * *
62103 TTTTCGCTCAAATCAATCGCAGAAGGAGTTGGATCAGCGTCAAC
1 TTTTCGCTCGATTCCATCGCAGAAGGAGGTGGATCAGCGTCAAC
* * * * * * *
62147 TTTTTGCTCGATTCTATCACAGAATGAGGTAGATCAGCATCGAC
1 TTTTCGCTCGATTCCATCGCAGAAGGAGGTGGATCAGCGTCAAC
* * * * * * *
62191 ATATCGTTCGATTTCCATCACAGAAAGAGAAGGAGGTAGATCAGCATCGAC
1 TTTTCGCTCGA-TTCCAT--C-G---CAGAAGGAGGTGGATCAGCGTCAAC
* * * * * * **
62242 ATATCGTTCGATTTCCATCACAGAAGGAGATGGATC-GACATTTTTA-
1 TTTTCGCTCGA-TTCCATCGCAGAAGGAGGTGGATCAG-C--GTCAAC
* * * *
62288 TTTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAGCGTCAAG
1 TTTTCGCTCGATTCCATCGCAGAAGGAGGTGGATCAGCGTCAAC
* * * *
62332 TTTTAGTTCGATTCTATCGCAGAAGGAGGTAGATCA--G-CAAC
1 TTTTCGCTCGATTCCATCGCAGAAGGAGGTGGATCAGCGTCAAC
* * * ** *** **
62373 ATCTCGTTCGATTCCATCATAGAAGGAGGTGGATCGATATTTTTA-
1 TTTTCGCTCGATTCCATCGCAGAAGGAGGTGGATC-A-GCGTCAAC
* * * *
62418 TTTTCGCTCAAATCCATCGTAGAAGGAGTTGGATCAGCGTCAAC
1 TTTTCGCTCGATTCCATCGCAGAAGGAGGTGGATCAGCGTCAAC
* * * * * *
62462 TTTTTGCTCGATTCAATCACAGAAGGAGGTAGATCAGCATCGAC
1 TTTTCGCTCGATTCCATCGCAGAAGGAGGTGGATCAGCGTCAAC
* * * * * **
62506 ATATCGTTCGATTTCCATCACAGAAGGAGGTGGATC-GACATTTTTA-
1 TTTTCGCTCGA-TTCCATCGCAGAAGGAGGTGGATCAG-C--GTCAAC
* * * *
62552 TTTTCGCTCAAATCCATCGCAGAAGGAGTTGGATTAGCGTCAAC
1 TTTTCGCTCGATTCCATCGCAGAAGGAGGTGGATCAGCGTCAAC
* * *
62596 TTTTAGCTCGATTCTATCGCAGAAGGAGGTAGATCA--G-CAAC
1 TTTTCGCTCGATTCCATCGCAGAAGGAGGTGGATCAGCGTCAAC
* * ** * * **
62637 ATCTCATTCGATTCCATCACAGAAGGAGGTGGATC-GACATTTTTA-
1 TTTTCGCTCGATTCCATCGCAGAAGGAGGTGGATCAG-C--GTCAAC
* * *
62682 TTTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAGCGTCAAC
1 TTTTCGCTCGATTCCATCGCAGAAGGAGGTGGATCAGCGTCAAC
62726 TTTT
1 TTTT
62730 AGTTTGATTT
Statistics
Matches: 427, Mismatches: 124, Indels: 64
0.69 0.20 0.10
Matches are distributed among these distances:
41 62 0.15
42 3 0.01
43 8 0.02
44 147 0.34
45 141 0.33
46 19 0.04
47 5 0.01
49 1 0.00
51 41 0.10
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (44 bp):
TTTTCGCTCGATTCCATCGCAGAAGGAGGTGGATCAGCGTCAAC
Found at i:62569 original size:134 final size:131
Alignment explanation
Indices: 62218--62813 Score: 917
Period size: 130 Copynumber: 4.5 Consensus size: 131
62208 TCACAGAAAG
* *
62218 AGAAGGAGGTAGATCAGCATCGACATATCGTTCGATTTCCATCACAGAAGGAGATGGATCGACAT
1 AGAAGGAGGTAGATCAGCA-C-ACATCTCGTTCGA-TTCCATCACAGAAGGAGGTGGATCGACAT
* *
62283 TTTTATTTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAGCGTCAAGTTTTAGTTCGATTCTA
63 TTTTATTTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAGCGTCAACTTTTAGCTCGATTCTA
*
62348 TCGC
128 TCAC
* *
62352 AGAAGGAGGTAGATCAGCA-ACATCTCGTTCGATTCCATCATAGAAGGAGGTGGATCGATATTTT
1 AGAAGGAGGTAGATCAGCACACATCTCGTTCGATTCCATCACAGAAGGAGGTGGATCGACATTTT
* * *
62416 TATTTTCGCTCAAATCCATCGTAGAAGGAGTTGGATCAGCGTCAACTTTTTGCTCGATTCAATCA
66 TATTTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAGCGTCAACTTTTAGCTCGATTCTATCA
62481 C
131 C
*
62482 AGAAGGAGGTAGATCAGCATCGACATATCGTTCGATTTCCATCACAGAAGGAGGTGGATCGACAT
1 AGAAGGAGGTAGATCAGCA-C-ACATCTCGTTCGA-TTCCATCACAGAAGGAGGTGGATCGACAT
*
62547 TTTTATTTTCGCTCAAATCCATCGCAGAAGGAGTTGGATTAGCGTCAACTTTTAGCTCGATTCTA
63 TTTTATTTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAGCGTCAACTTTTAGCTCGATTCTA
*
62612 TCGC
128 TCAC
*
62616 AGAAGGAGGTAGATCAGCA-ACATCTCATTCGATTCCATCACAGAAGGAGGTGGATCGACATTTT
1 AGAAGGAGGTAGATCAGCACACATCTCGTTCGATTCCATCACAGAAGGAGGTGGATCGACATTTT
* * *
62680 TATTTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAGCGTCAACTTTTAGTTTGATTTTATCA
66 TATTTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAGCGTCAACTTTTAGCTCGATTCTATCA
62745 C
131 C
* * *
62746 AGAAAGAGGTAGATCAACACACACATCTCGTTTCGATTCCATCACAGAATGAGGTGGATCGACAT
1 AGAAGGAGGTAGATC-A-GCACACATCTCG-TTCGATTCCATCACAGAAGGAGGTGGATCGACAT
62811 TTT
63 TTT
62814 CGATTCATCA
Statistics
Matches: 425, Mismatches: 29, Indels: 16
0.90 0.06 0.03
Matches are distributed among these distances:
130 215 0.51
131 24 0.06
132 2 0.00
133 19 0.04
134 165 0.39
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (131 bp):
AGAAGGAGGTAGATCAGCACACATCTCGTTCGATTCCATCACAGAAGGAGGTGGATCGACATTTT
TATTTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAGCGTCAACTTTTAGCTCGATTCTATCA
C
Found at i:62688 original size:264 final size:264
Alignment explanation
Indices: 62218--62813 Score: 998
Period size: 264 Copynumber: 2.3 Consensus size: 264
62208 TCACAGAAAG
*
62218 AGAAGGAGGTAGATCAGCATCGACATATCGTTCGATTTCCATCACAGAAGGAGATGGATCGACAT
1 AGAAGGAGGTAGATCAGCATCGACATATCGTTCGATTTCCATCACAGAAGGAGGTGGATCGACAT
* *
62283 TTTTATTTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAGCGTCAAGTTTTAGTTCGATTCTA
66 TTTTATTTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAGCGTCAACTTTTAGCTCGATTCTA
* * *
62348 TCGCAGAAGGAGGTAGATCAGCAACATCTCGTTCGATTCCATCATAGAAGGAGGTGGATCGATAT
131 TCGCAGAAGGAGGTAGATCAGCAACATCTCATTCGATTCCATCACAGAAGGAGGTGGATCGACAT
* *
62413 TTTTATTTTCGCTCAAATCCATCGTAGAAGGAGTTGGATCAGCGTCAACTTTTTGCTCGATTCAA
196 TTTTATTTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAGCGTCAACTTTTAGCTCGATTCAA
62478 TCAC
261 TCAC
62482 AGAAGGAGGTAGATCAGCATCGACATATCGTTCGATTTCCATCACAGAAGGAGGTGGATCGACAT
1 AGAAGGAGGTAGATCAGCATCGACATATCGTTCGATTTCCATCACAGAAGGAGGTGGATCGACAT
*
62547 TTTTATTTTCGCTCAAATCCATCGCAGAAGGAGTTGGATTAGCGTCAACTTTTAGCTCGATTCTA
66 TTTTATTTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAGCGTCAACTTTTAGCTCGATTCTA
62612 TCGCAGAAGGAGGTAGATCAGCAACATCTCATTCGATTCCATCACAGAAGGAGGTGGATCGACAT
131 TCGCAGAAGGAGGTAGATCAGCAACATCTCATTCGATTCCATCACAGAAGGAGGTGGATCGACAT
* * **
62677 TTTTATTTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAGCGTCAACTTTTAGTTTGATTTTA
196 TTTTATTTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAGCGTCAACTTTTAGCTCGATTCAA
62742 TCAC
261 TCAC
* * * * *
62746 AGAAAGAGGTAGATCAACA-CACACATCTCGTTTCGA-TTCCATCACAGAATGAGGTGGATCGAC
1 AGAAGGAGGTAGATCAGCATC-GACATATCG-TTCGATTTCCATCACAGAAGGAGGTGGATCGAC
62809 ATTTT
64 ATTTT
62814 CGATTCATCA
Statistics
Matches: 312, Mismatches: 18, Indels: 4
0.93 0.05 0.01
Matches are distributed among these distances:
263 1 0.00
264 306 0.98
265 5 0.02
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (264 bp):
AGAAGGAGGTAGATCAGCATCGACATATCGTTCGATTTCCATCACAGAAGGAGGTGGATCGACAT
TTTTATTTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAGCGTCAACTTTTAGCTCGATTCTA
TCGCAGAAGGAGGTAGATCAGCAACATCTCATTCGATTCCATCACAGAAGGAGGTGGATCGACAT
TTTTATTTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAGCGTCAACTTTTAGCTCGATTCAA
TCAC
Found at i:71151 original size:130 final size:131
Alignment explanation
Indices: 70931--71287 Score: 527
Period size: 130 Copynumber: 2.7 Consensus size: 131
70921 TGATGAATCG
* * *
70931 AAAATGTCGATCCACCTCATTCTGTGATGGAATCGAAACGAGATGTGTGTGCTGATCTACCTCTT
1 AAAATGTCGATCCACCTCCTTCTGTGATGGAATCG-AATGAGA--TGTGTGCTGATCTACCTCAT
* *
70996 TCTGTGATAAAATCGAACTAAAAGTTGACGCTGATCCAACTCCTTCTGCGATGGATTTGAGCGAA
63 TCTGTGATAGAATCGAGCTAAAAGTTGACGCTGATCCAACTCCTTCTGCGATGGATTTGAGCGAA
71061 AATA
128 AATA
* * *
71065 AAAATATCGATCCACTTCCTTCTGTGATGGAATCGAATGAGATGT-TGCTGATCTACCTCCTTCT
1 AAAATGTCGATCCACCTCCTTCTGTGATGGAATCGAATGAGATGTGTGCTGATCTACCTCATTCT
* *
71129 GCGATAGAATCGAGCTAAAAGTTGACGTTGATCCAACTCCTTCTGCGATGGATTTGAGCGAAAAT
66 GTGATAGAATCGAGCTAAAAGTTGACGCTGATCCAACTCCTTCTGCGATGGATTTGAGCGAAAAT
71194 A
131 A
* * *
71195 AAAATGCCGATCTACCTCCTTCTGTGATGGAAATCGAATGATATGTTGATGCTGATCTACCTCAT
1 AAAATGTCGATCCACCTCCTTCTGTGATGG-AATCGAATGAGATG-TG-TGCTGATCTACCTCAT
*
71260 TCTGTGATAGAATCGAGCAAAAAGTTGA
63 TCTGTGATAGAATCGAGCTAAAAGTTGA
71288 ACAATTTCTT
Statistics
Matches: 202, Mismatches: 17, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
130 106 0.52
131 16 0.08
132 1 0.00
133 6 0.03
134 73 0.36
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.30
Consensus pattern (131 bp):
AAAATGTCGATCCACCTCCTTCTGTGATGGAATCGAATGAGATGTGTGCTGATCTACCTCATTCT
GTGATAGAATCGAGCTAAAAGTTGACGCTGATCCAACTCCTTCTGCGATGGATTTGAGCGAAAAT
A
Found at i:71773 original size:36 final size:35
Alignment explanation
Indices: 71723--72009 Score: 160
Period size: 36 Copynumber: 8.4 Consensus size: 35
71713 AAAGTTTTTG
* *
71723 TGTTTCAAGAGAAACTGTCTCCAGGGAGACAAAAT
1 TGTTTCAAGGGAAACTGTCTCAAGGGAGACAAAAT
**
71758 TCAG-TTCAAGGGAAAC-GATCTCAA---AGATC---GG
1 T--GTTTCAAGGGAAACTG-TCTCAAGGGAGA-CAAAAT
* *
71789 TGTTTCAAGGGAAACTGCCTCAAGAGAGACAAAAT
1 TGTTTCAAGGGAAACTGTCTCAAGGGAGACAAAAT
71824 TCGTTTCAAGGGAAACTGTCTCAAGGGAGACAAAATT
1 T-GTTTCAAGGGAAACTGTCTCAAGGGAGACAAAA-T
** * ****
71861 TGTTTCAAGGGAAACAATCTC-A---A-ATATTGG
1 TGTTTCAAGGGAAACTGTCTCAAGGGAGACAAAAT
* *
71891 TGTTTCAAGGGAAAATGTCTCAAGAGAGACAAAACTT
1 TGTTTCAAGGGAAACTGTCTCAAGGGAGACAAAA--T
** ****
71928 TGTTTCAAGGGAAACAATCTCAA---AG--ATTGG
1 TGTTTCAAGGGAAACTGTCTCAAGGGAGACAAAAT
*
71958 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAACTT
1 TGTTTCAAGGGAAACTGTCTCAAGGGAGACAAAA--T
71995 TGTTTCAAGGGAAAC
1 TGTTTCAAGGGAAAC
72010 AATCTTAAAG
Statistics
Matches: 187, Mismatches: 37, Indels: 54
0.67 0.13 0.19
Matches are distributed among these distances:
29 1 0.01
30 56 0.30
31 5 0.03
32 3 0.02
33 8 0.04
34 4 0.02
35 7 0.04
36 65 0.35
37 38 0.20
ACGTcount: A:0.37, C:0.16, G:0.23, T:0.24
Consensus pattern (35 bp):
TGTTTCAAGGGAAACTGTCTCAAGGGAGACAAAAT
Found at i:71797 original size:66 final size:66
Alignment explanation
Indices: 71722--71847 Score: 184
Period size: 66 Copynumber: 1.9 Consensus size: 66
71712 CAAAGTTTTT
* * *
71722 GTGTTTCAAGAGAAACTGTCTCCAGGGAGACAAAATTCAG-TTCAAGGGAAAC-GATCTCAAAGA
1 GTGTTTCAAGAGAAACTGCCTCAAGAGAGACAAAATTC-GTTTCAAGGGAAACTG-TCTCAAAGA
71785 TCG
64 TCG
*
71788 GTGTTTCAAGGGAAACTGCCTCAAGAGAGACAAAATTCGTTTCAAGGGAAACTGTCTCAA
1 GTGTTTCAAGAGAAACTGCCTCAAGAGAGACAAAATTCGTTTCAAGGGAAACTGTCTCAA
71848 GGGAGACAAA
Statistics
Matches: 54, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
65 1 0.02
66 52 0.96
67 1 0.02
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.22
Consensus pattern (66 bp):
GTGTTTCAAGAGAAACTGCCTCAAGAGAGACAAAATTCGTTTCAAGGGAAACTGTCTCAAAGATC
G
Found at i:71855 original size:102 final size:103
Alignment explanation
Indices: 71724--71942 Score: 334
Period size: 102 Copynumber: 2.1 Consensus size: 103
71714 AAGTTTTTGT
* * *
71724 GTTTCAAGAGAAACTGTCTCCAGGGAGACAAAATTCAG-TTCAAGGGAAACGATCTCAAAGATCG
1 GTTTCAAGGGAAACTGTCTCAAGGGAGACAAAATT-AGTTTCAAGGGAAACAATCTCAAAGATCG
*
71788 GTGTTTCAAGGGAAACTGCCTCAAGAGAGACAAAA-TTC
65 GTGTTTCAAGGGAAAATGCCTCAAGAGAGACAAAACTTC
* * *
71826 GTTTCAAGGGAAACTGTCTCAAGGGAGACAAAATTTGTTTCAAGGGAAACAATCTCAAATATTGG
1 GTTTCAAGGGAAACTGTCTCAAGGGAGACAAAATTAGTTTCAAGGGAAACAATCTCAAAGATCGG
* *
71891 TGTTTCAAGGGAAAATGTCTCAAGAGAGACAAAACTTT
66 TGTTTCAAGGGAAAATGCCTCAAGAGAGACAAAACTTC
71929 GTTTCAAGGGAAAC
1 GTTTCAAGGGAAAC
71943 AATCTCAAAG
Statistics
Matches: 106, Mismatches: 9, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
101 1 0.01
102 89 0.84
103 16 0.15
ACGTcount: A:0.37, C:0.16, G:0.23, T:0.23
Consensus pattern (103 bp):
GTTTCAAGGGAAACTGTCTCAAGGGAGACAAAATTAGTTTCAAGGGAAACAATCTCAAAGATCGG
TGTTTCAAGGGAAAATGCCTCAAGAGAGACAAAACTTC
Found at i:71941 original size:37 final size:37
Alignment explanation
Indices: 71891--72008 Score: 121
Period size: 37 Copynumber: 3.4 Consensus size: 37
71881 CAAATATTGG
71891 TGTTTCAAGGGAAAATGTCTCAAGAGAGACAAAACTT
1 TGTTTCAAGGGAAAATGTCTCAAGAGAGACAAAACTT
*
71928 TGTTTCAAGGGAAACA-ATCTC-A-A-AG-----A-TT
1 TGTTTCAAGGGAAA-ATGTCTCAAGAGAGACAAAACTT
*
71956 GGTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAACTT
1 --TGTTTCAAGGGAAAATGTCTCAAGAGAGACAAAACTT
71995 TGTTTCAAGGGAAA
1 TGTTTCAAGGGAAA
72009 CAATCTTAAA
Statistics
Matches: 65, Mismatches: 3, Indels: 26
0.69 0.03 0.28
Matches are distributed among these distances:
28 2 0.03
29 1 0.02
30 18 0.28
31 1 0.02
32 1 0.02
33 2 0.03
34 2 0.03
35 1 0.02
36 1 0.02
37 32 0.49
38 2 0.03
39 2 0.03
ACGTcount: A:0.38, C:0.14, G:0.23, T:0.25
Consensus pattern (37 bp):
TGTTTCAAGGGAAAATGTCTCAAGAGAGACAAAACTT
Found at i:71957 original size:67 final size:67
Alignment explanation
Indices: 71826--72086 Score: 407
Period size: 67 Copynumber: 3.9 Consensus size: 67
71816 GACAAAATTC
* *
71826 GTTTCAAGGGAAACTGTCTCAAGGGAGACAAAA-TTTGTTTCAAGGGAAACAATCTCAAATATTG
1 GTTTCAAGGGAAACTGTCTCAAGAGAGACAAAACTTTGTTTCAAGGGAAACAATCTCAAAGATTG
71890 GT
66 GT
*
71892 GTTTCAAGGGAAAATGTCTCAAGAGAGACAAAACTTTGTTTCAAGGGAAACAATCTCAAAGATTG
1 GTTTCAAGGGAAACTGTCTCAAGAGAGACAAAACTTTGTTTCAAGGGAAACAATCTCAAAGATTG
71957 GT
66 GT
*
71959 GTTTCAAGGGAAACTGTCTCAAGAGAGACAAAACTTTGTTTCAAGGGAAACAATCTTAAAGATTG
1 GTTTCAAGGGAAACTGTCTCAAGAGAGACAAAACTTTGTTTCAAGGGAAACAATCTCAAAGATTG
72024 GT
66 GT
* * * * * *
72026 GTTTCAAGAGAAACTATCTCAAGAGAGATAAAATCTCCTGTTTCGAGGGAAACTATCTCAA
1 GTTTCAAGGGAAACTGTCTCAAGAGAGACAAAA-CT-TTGTTTCAAGGGAAACAATCTCAA
72087 GCGAGATAAA
Statistics
Matches: 180, Mismatches: 12, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
66 31 0.17
67 127 0.71
68 2 0.01
69 20 0.11
ACGTcount: A:0.38, C:0.15, G:0.21, T:0.26
Consensus pattern (67 bp):
GTTTCAAGGGAAACTGTCTCAAGAGAGACAAAACTTTGTTTCAAGGGAAACAATCTCAAAGATTG
GT
Found at i:71962 original size:30 final size:30
Alignment explanation
Indices: 71928--72047 Score: 100
Period size: 30 Copynumber: 3.8 Consensus size: 30
71918 GACAAAACTT
71928 TGTTTCAAGGGAAACAATCTCAAAGATTGG
1 TGTTTCAAGGGAAACAATCTCAAAGATTGG
**
71958 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAACTT--
1 TGTTTCAAGGGAAACAATCTC-A-A-AG-----A-TTGG
*
71995 TGTTTCAAGGGAAACAATCTTAAAGATTGG
1 TGTTTCAAGGGAAACAATCTCAAAGATTGG
* *
72025 TGTTTCAAGAGAAACTATCTCAA
1 TGTTTCAAGGGAAACAATCTCAA
72048 GAGAGATAAA
Statistics
Matches: 71, Mismatches: 8, Indels: 22
0.70 0.08 0.22
Matches are distributed among these distances:
28 2 0.03
29 1 0.01
30 39 0.55
31 1 0.01
32 1 0.01
33 2 0.03
34 2 0.03
35 1 0.01
36 1 0.01
37 18 0.25
38 1 0.01
39 2 0.03
ACGTcount: A:0.38, C:0.14, G:0.21, T:0.28
Consensus pattern (30 bp):
TGTTTCAAGGGAAACAATCTCAAAGATTGG
Found at i:72079 original size:39 final size:39
Alignment explanation
Indices: 72025--72259 Score: 312
Period size: 39 Copynumber: 6.0 Consensus size: 39
72015 TAAAGATTGG
* * *
72025 TGTTTCAAGAGAAACTATCTCAAGAGAGATAAAATCTCC
1 TGTTTCGAGGGAAACTATCTCAAGAGAGATAAAATCTTC
*
72064 TGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTC
1 TGTTTCGAGGGAAACTATCTCAAGAGAGATAAAATCTTC
* * * *
72103 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATATTA
1 TGTTTCGAGGGAAACTATCTCAAGAGAGATAAAATCTTC
* *
72142 TGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATTTTC
1 TGTTTCGAGGGAAACTATCTCAAGAGAGATAAAATCTTC
* * *
72181 TGTTTCGAGAGAAACTATCTCAA-ATGAGACAAACTCTTC
1 TGTTTCGAGGGAAACTATCTCAAGA-GAGATAAAATCTTC
*
72220 TGTTTCGAGGGAAATTATCTCAAGTA-AGATAAAATCTTC
1 TGTTTCGAGGGAAACTATCTCAAG-AGAGATAAAATCTTC
72259 T
1 T
72260 TTAAAAACAA
Statistics
Matches: 174, Mismatches: 19, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
39 173 0.99
41 1 0.01
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.29
Consensus pattern (39 bp):
TGTTTCGAGGGAAACTATCTCAAGAGAGATAAAATCTTC
Found at i:72154 original size:78 final size:78
Alignment explanation
Indices: 72025--72259 Score: 346
Period size: 78 Copynumber: 3.0 Consensus size: 78
72015 TAAAGATTGG
*
72025 TGTTTCAAGAGAAACTATCTCAAGAGAGATAAAATCTCCTGTTTCGAGGGAAACTATCTCAAGCG
1 TGTTTCAAGAGAAACTATCTCAAGAGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCG
72090 AGATAAAATCTTC
66 AGATAAAATCTTC
* * * *
72103 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATATTATGTTTCGAGGGAAACTATCTCAAGCG
1 TGTTTCAAGAGAAACTATCTCAAGAGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCG
*
72168 AGATAAAATTTTC
66 AGATAAAATCTTC
* * * * *
72181 TGTTTCGAGAGAAACTATCTCAA-ATGAGACAAACTCTTCTGTTTCGAGGGAAATTATCTCAAGT
1 TGTTTCAAGAGAAACTATCTCAAGA-GAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGC
*
72245 AAGATAAAATCTTC
65 GAGATAAAATCTTC
72259 T
1 T
72260 TTAAAAACAA
Statistics
Matches: 139, Mismatches: 17, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
78 139 1.00
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.29
Consensus pattern (78 bp):
TGTTTCAAGAGAAACTATCTCAAGAGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCG
AGATAAAATCTTC
Found at i:72359 original size:76 final size:75
Alignment explanation
Indices: 72262--72423 Score: 243
Period size: 75 Copynumber: 2.1 Consensus size: 75
72252 AATCTTCTTT
* * *
72262 AAAAACAATCTTGAGTGAAATGAAATGTATTCTTTCGAGTTAAAATTGTCTCAAGAAAGACAAAT
1 AAAAACAATCTTGAGTCAAATGAAATGTATTCTTTCGAG-TAAAACTGTCTCAAGAAAGACAAAA
*
72327 TTTGTTTTAAG
65 TCTGTTTTAAG
* * **
72338 AAAAACAATCTTGAGTCAAATGAAATGTCTTCTTTCGAGTAAAACTGTCTTAAGTGAGACAAAAT
1 AAAAACAATCTTGAGTCAAATGAAATGTATTCTTTCGAGTAAAACTGTCTCAAGAAAGACAAAAT
72403 CTGTTTTAAG
66 CTGTTTTAAG
72413 AAAAACAATCT
1 AAAAACAATCT
72424 CAAGTGAGAT
Statistics
Matches: 78, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
75 41 0.53
76 37 0.47
ACGTcount: A:0.41, C:0.12, G:0.15, T:0.32
Consensus pattern (75 bp):
AAAAACAATCTTGAGTCAAATGAAATGTATTCTTTCGAGTAAAACTGTCTCAAGAAAGACAAAAT
CTGTTTTAAG
Found at i:76890 original size:50 final size:50
Alignment explanation
Indices: 76764--76931 Score: 117
Period size: 50 Copynumber: 3.3 Consensus size: 50
76754 GTTGATGTTG
* * * * * * *
76764 TTTTATTTTAATTTAGTCATTGTAATTTCTGATTTAGCTATTATTATTTA
1 TTTTATTGTATTTTAGTCATTATTATTTCTTATTTAGCTATAACTATTTA
* * * * *
76814 ATTT-TTGCATTTTGGTCACTTTTTATTTCTTATTTAGTTACTAACT-TTTA
1 TTTTATTGTATTTTAGTCA-TTATTATTTCTTATTTAGCTA-TAACTATTTA
* **
76864 TTTTATTGTATTTTAGTCATTATTATTT-TATATTTATGCAATTAGGTATTTA
1 TTTTATTGTATTTTAGTCATTATTATTTCT-TATTTA-GCTA-TAACTATTTA
*
76916 TTTTATGTTTATTTTA
1 TTTTAT-TGTATTTTA
76932 TTTTATATTT
Statistics
Matches: 90, Mismatches: 21, Indels: 11
0.74 0.17 0.09
Matches are distributed among these distances:
49 11 0.12
50 41 0.46
51 20 0.22
52 10 0.11
53 8 0.09
ACGTcount: A:0.24, C:0.07, G:0.08, T:0.61
Consensus pattern (50 bp):
TTTTATTGTATTTTAGTCATTATTATTTCTTATTTAGCTATAACTATTTA
Found at i:78366 original size:20 final size:19
Alignment explanation
Indices: 78343--78399 Score: 51
Period size: 20 Copynumber: 2.8 Consensus size: 19
78333 AGGATATAAC
* *
78343 AAAAAATACATAAAAATAG
1 AAAAAAAACATAAAAAAAG
*
78362 AAAAAAAAGCAAAAAAAAAG
1 AAAAAAAA-CATAAAAAAAG
*
78382 AAATAAAAGAAATAAAAA
1 AAA-AAAA-ACATAAAAA
78400 GGGGAAAAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
19 7 0.23
20 12 0.40
21 10 0.33
22 1 0.03
ACGTcount: A:0.81, C:0.04, G:0.07, T:0.09
Consensus pattern (19 bp):
AAAAAAAACATAAAAAAAG
Found at i:79879 original size:75 final size:76
Alignment explanation
Indices: 79790--79949 Score: 223
Period size: 76 Copynumber: 2.1 Consensus size: 76
79780 ATCTCACTTG
* * *
79790 AGATTGTTTTTCTTAAAACAGATTTTGTCTCACTTAAGAT-AGTTTTACTCGAAAGAAGACATTT
1 AGATTGTTTCTCTTAAAACAAAATTTGTCTCACTTAAGATAAGTTTTACTCGAAAGAAGACATTT
*
79854 CATTTGACTCA
66 CATTTCACTCA
** * * * *
79865 AGATTGTTTCTCTTAAAACAAAATTTGTCTTTCTTGAGATAATTTTTACTCGAAATAATACATTT
1 AGATTGTTTCTCTTAAAACAAAATTTGTCTCACTTAAGATAAGTTTTACTCGAAAGAAGACATTT
79930 CATTTCACTCA
66 CATTTCACTCA
79941 AGATTGTTT
1 AGATTGTTT
79950 TTAAAGAAGA
Statistics
Matches: 74, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
75 34 0.46
76 40 0.54
ACGTcount: A:0.32, C:0.14, G:0.11, T:0.42
Consensus pattern (76 bp):
AGATTGTTTCTCTTAAAACAAAATTTGTCTCACTTAAGATAAGTTTTACTCGAAAGAAGACATTT
CATTTCACTCA
Found at i:80015 original size:39 final size:39
Alignment explanation
Indices: 79954--80188 Score: 299
Period size: 39 Copynumber: 6.0 Consensus size: 39
79944 TTGTTTTTAA
** * *
79954 AGAAGATTTTATCTTACATGAGATAATTTCCCTCGAAAC
1 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
* * ** * *
79993 AGAAGAATTTGTCTCATTTGAGATAGTTTCTCTCGAAAT
1 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
*
80032 AGAAAATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
1 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
* * *
80071 ATAATATTTTATCTCGCTTGAGATAGTTTCCCTTGAAAC
1 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
*
80110 AGAAGATTTTATCTCGCTTAAGATAGTTTCCCTCGAAAC
1 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
* * * *
80149 AGGAGATTTTATCTCTCTTGAGATAGTTTCTCTTGAAAC
1 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
80188 A
1 A
80189 CCAATCTTTA
Statistics
Matches: 169, Mismatches: 27, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
39 169 1.00
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.37
Consensus pattern (39 bp):
AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
Found at i:80254 original size:67 final size:67
Alignment explanation
Indices: 80127--80387 Score: 407
Period size: 67 Copynumber: 3.9 Consensus size: 67
80117 TTTATCTCGC
* * * * * *
80127 TTAAGATAGTTTCCCTCGAAACAGGAGATTTTATCTCTCTTGAGATAGTTTCTCTTGAAACACCA
1 TTAAGATTGTTTCCCTTGAAACA-AAG-TTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACACCA
80192 ATCT
64 ATCT
80196 TTAAGATTGTTTCCCTTGAAACAAAGTTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACACCAAT
1 TTAAGATTGTTTCCCTTGAAACAAAGTTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACACCAAT
80261 CT
66 CT
*
80263 TTGAGATTGTTTCCCTTGAAACAAAGTTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACACCAAT
1 TTAAGATTGTTTCCCTTGAAACAAAGTTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACACCAAT
*
80328 AT
66 CT
* *
80330 TTGAGATTGTTTCCCTTGAAACAAA-TTTTGTCTCCCTTGAGACAGTTTCCCTTGAAAC
1 TTAAGATTGTTTCCCTTGAAACAAAGTTTTGTCTCTCTTGAGACAGTTTCCCTTGAAAC
80388 GAATTTTGTC
Statistics
Matches: 183, Mismatches: 9, Indels: 3
0.94 0.05 0.02
Matches are distributed among these distances:
66 32 0.17
67 128 0.70
68 2 0.01
69 21 0.11
ACGTcount: A:0.27, C:0.21, G:0.15, T:0.37
Consensus pattern (67 bp):
TTAAGATTGTTTCCCTTGAAACAAAGTTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACACCAAT
CT
Found at i:80267 original size:30 final size:30
Alignment explanation
Indices: 80233--80352 Score: 100
Period size: 30 Copynumber: 3.8 Consensus size: 30
80223 TTTGTCTCTC
80233 TTGAGACAGTTTCCCTTGAAACACCAATCT
1 TTGAGACAGTTTCCCTTGAAACACCAATCT
**
80263 TTGAGATTGTTTCCCTTGAAACA--AAGTTTTGTCTCT
1 TTGAGACAGTTTCCCTTGAAACACCAA--------TCT
*
80299 CTTGAGACAGTTTCCCTTGAAACACCAATAT
1 -TTGAGACAGTTTCCCTTGAAACACCAATCT
**
80330 TTGAGATTGTTTCCCTTGAAACA
1 TTGAGACAGTTTCCCTTGAAACA
80353 AATTTTGTCT
Statistics
Matches: 72, Mismatches: 7, Indels: 22
0.71 0.07 0.22
Matches are distributed among these distances:
28 2 0.03
30 42 0.58
31 2 0.03
36 3 0.04
37 21 0.29
39 2 0.03
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.36
Consensus pattern (30 bp):
TTGAGACAGTTTCCCTTGAAACACCAATCT
Found at i:80397 original size:36 final size:36
Alignment explanation
Indices: 80338--80489 Score: 160
Period size: 36 Copynumber: 4.4 Consensus size: 36
80328 ATTTGAGATT
*
80338 GTTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACA
1 GTTTCCCTTGAAACGAATTTTGTCTCCCTTGAGACA
*
80374 GTTTCCCTTGAAACGAATTTTGTCTCTCTTGAGACA
1 GTTTCCCTTGAAACGAATTTTGTCTCCCTTGAGACA
**
80410 GTTTCCCTTGAAAC--A--CCGATCT---TTGAGATC-
1 GTTTCCCTTGAAACGAATTTTG-TCTCCCTTGAGA-CA
*
80440 GTTTCCCTTG-AACTGAATTTTGTCTCCCTGGAGACA
1 GTTTCCCTTGAAAC-GAATTTTGTCTCCCTTGAGACA
*
80476 GTTTCTCTTGAAAC
1 GTTTCCCTTGAAAC
80490 ACAAAAACTT
Statistics
Matches: 96, Mismatches: 8, Indels: 23
0.76 0.06 0.18
Matches are distributed among these distances:
29 3 0.03
30 16 0.17
31 1 0.01
32 2 0.02
33 6 0.06
34 2 0.02
35 1 0.01
36 62 0.65
37 3 0.03
ACGTcount: A:0.22, C:0.24, G:0.16, T:0.37
Consensus pattern (36 bp):
GTTTCCCTTGAAACGAATTTTGTCTCCCTTGAGACA
Found at i:80411 original size:102 final size:103
Alignment explanation
Indices: 80271--80490 Score: 354
Period size: 102 Copynumber: 2.1 Consensus size: 103
80261 CTTTGAGATT
80271 GTTTCCCTTGAAACAAAGTTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACACCAATATTTGAGA
1 GTTTCCCTTGAAACAAAGTTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACACCAATATTTGAGA
* *
80336 TTGTTTCCCTTGAAAC-AAATTTTGTCTCCCTTGAGACA
66 TCGTTTCCCTTG-AACTAAATTTTGTCTCCCTGGAGACA
* * *
80374 GTTTCCCTTGAAACGAA-TTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACACCGATCTTTGAGA
1 GTTTCCCTTGAAACAAAGTTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACACCAATATTTGAGA
*
80438 TCGTTTCCCTTGAACTGAATTTTGTCTCCCTGGAGACA
66 TCGTTTCCCTTGAACTAAATTTTGTCTCCCTGGAGACA
*
80476 GTTTCTCTTGAAACA
1 GTTTCCCTTGAAACA
80491 CAAAAACTTT
Statistics
Matches: 108, Mismatches: 8, Indels: 3
0.91 0.07 0.03
Matches are distributed among these distances:
101 3 0.03
102 89 0.82
103 16 0.15
ACGTcount: A:0.24, C:0.23, G:0.16, T:0.37
Consensus pattern (103 bp):
GTTTCCCTTGAAACAAAGTTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACACCAATATTTGAGA
TCGTTTCCCTTGAACTAAATTTTGTCTCCCTGGAGACA
Found at i:80436 original size:66 final size:66
Alignment explanation
Indices: 80366--80491 Score: 193
Period size: 66 Copynumber: 1.9 Consensus size: 66
80356 TTTGTCTCCC
* *
80366 TTGAGA-CAGTTTCCCTTGAAAC-GAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACACCGA
1 TTGAGATC-GTTTCCCTTG-AACTGAATTTTGTCTCCCTGGAGACAGTTTCCCTTGAAACACCGA
80429 TCT
64 TCT
*
80432 TTGAGATCGTTTCCCTTGAACTGAATTTTGTCTCCCTGGAGACAGTTTCTCTTGAAACAC
1 TTGAGATCGTTTCCCTTGAACTGAATTTTGTCTCCCTGGAGACAGTTTCCCTTGAAACAC
80492 AAAAACTTTG
Statistics
Matches: 55, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
65 3 0.05
66 51 0.93
67 1 0.02
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.36
Consensus pattern (66 bp):
TTGAGATCGTTTCCCTTGAACTGAATTTTGTCTCCCTGGAGACAGTTTCCCTTGAAACACCGATC
T
Found at i:81143 original size:131 final size:130
Alignment explanation
Indices: 80926--81218 Score: 444
Period size: 131 Copynumber: 2.2 Consensus size: 130
80916 AAGAAATTGT
*
80926 TCAACTTTTTGCTCGATTCTATCACAGAATGAGGTAGATCAGCATCAACATATCATTCGATTTCC
1 TCAAC-TTTTGTTCGATTCTATCACAGAATGAGGTAGATCAG-A-CAACATATCATTCGATTTCC
*
80991 ATCACACAAGGAGGTGGATCGACATTTTTATTTTCGCTCAAATCCATCGCATAAGGAGTTGGATC
63 ATCACACAAGGAGGTGGATCGACATTTTTATTTTCGCTCAAATCCATCG-AGAAGGAGTTGGATC
81056 AACG
127 AACG
* * *
81060 TCAACTTTTAGTTCGATTCTATCACAGAATGAGGTAGGTCAG-CAACATCTCGTTCGATTTCCAT
1 TCAACTTTT-GTTCGATTCTATCACAGAATGAGGTAGATCAGACAACATATCATTCGATTTCCAT
* * *
81124 CACAGAAGGAGGTGGATCGACATTTTTATTTTCGCTCAAATCCATCGAGAAGGAGTTGGGTCAGC
65 CACACAAGGAGGTGGATCGACATTTTTATTTTCGCTCAAATCCATCGAGAAGGAGTTGGATCAAC
81189 G
130 G
*
81190 TCAACTTTTTTGTCGATTCTATCACAGAA
1 TCAACTTTTGT-TCGATTCTATCACAGAA
81219 GAAGAAGGAG
Statistics
Matches: 148, Mismatches: 9, Indels: 8
0.90 0.05 0.05
Matches are distributed among these distances:
129 1 0.01
130 42 0.28
131 66 0.45
133 4 0.03
134 35 0.24
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.31
Consensus pattern (130 bp):
TCAACTTTTGTTCGATTCTATCACAGAATGAGGTAGATCAGACAACATATCATTCGATTTCCATC
ACACAAGGAGGTGGATCGACATTTTTATTTTCGCTCAAATCCATCGAGAAGGAGTTGGATCAACG
Found at i:81225 original size:50 final size:50
Alignment explanation
Indices: 81171--81268 Score: 171
Period size: 50 Copynumber: 2.0 Consensus size: 50
81161 AAATCCATCG
*
81171 AGAAGGAGTTGGGTCAGCGTCAACTTTTTTG-TCGATTCTATCACAGAAGA
1 AGAAGGAGTTGGATCAGCGTCAA-TTTTTTGCTCGATTCTATCACAGAAGA
81221 AGAAGGAGTTGGATCAGCGTCAATTTTTTGCTCGATTCTATCACAGAA
1 AGAAGGAGTTGGATCAGCGTCAATTTTTTGCTCGATTCTATCACAGAA
81269 TGAGAATGAG
Statistics
Matches: 46, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
49 7 0.15
50 39 0.85
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (50 bp):
AGAAGGAGTTGGATCAGCGTCAATTTTTTGCTCGATTCTATCACAGAAGA
Found at i:81286 original size:50 final size:50
Alignment explanation
Indices: 81184--81286 Score: 147
Period size: 50 Copynumber: 2.1 Consensus size: 50
81174 AGGAGTTGGG
* *
81184 TCAGCGTCAACTTTTTTGTCGATTCTATCACAGAAGAAGAAGGAGTTGGA
1 TCAGCGTCAACTTTTTTGTCGATTCTATCACAGAAGAAGAAGGAGGTAGA
*
81234 TCAGCGTCAA-TTTTTTGCTCGATTCTATCACAGAATG-AGAATGAGGTAGA
1 TCAGCGTCAACTTTTTTG-TCGATTCTATCACAGAA-GAAGAAGGAGGTAGA
81284 TCA
1 TCA
81287 ACATCGACAT
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
49 7 0.15
50 40 0.83
51 1 0.02
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.31
Consensus pattern (50 bp):
TCAGCGTCAACTTTTTTGTCGATTCTATCACAGAAGAAGAAGGAGGTAGA
Found at i:81354 original size:189 final size:181
Alignment explanation
Indices: 81043--81408 Score: 513
Period size: 189 Copynumber: 2.0 Consensus size: 181
81033 TCCATCGCAT
* *
81043 AAGGAGTTGGATCAACGTCAACTTTTAGTTCGATTCTATCACAGAATGAGGTAGGTCAGCAACAT
1 AAGGAGTTGGATCAACGTCAACTTTTAGCTCGATTCTATCACAGAATGAGATAGGTCAGCAACAT
*
81108 CTCGTTCGATTTCCATCACAGAAGGAGGTGGATCGACATTTTTATTTTCGCTCAAATCCATCG-A
66 CTCGTTCCATTTCCATCACAGAAGGAGGTGGATCGACATTTTTATTTTCGCTCAAATCCATCGCA
* * *
81172 GAAGGAGTTGGGTCAGCGTCAACTTTTTT-GTCGATTCTATCACAGAAGAAG
131 GAAGGAGTTGGATCAACGTCAA-TTTTTTCCTCGATTCTATCACAGAAGAAG
* * *
81223 AAGGAGTTGGATCAGCGTCAATTTTTTGCTCGATTCTATCACAGAATGAGAATGAGGT-AGATCA
1 AAGGAGTTGGATCAACGTCAACTTTTAGCTCGATTCTATCACAGAATGAG-AT-AGGTCAG--CA
* *
81287 ACATCGACATATCGTTCCATTTCCATCACGGAAGGAGGTGGATCGACATTTTTATTTTTGCTCAA
62 ACAT---C---TCGTTCCATTTCCATCACAGAAGGAGGTGGATCGACATTTTTATTTTCGCTCAA
81352 ATCCATCGCAGAAGGAGTTGGATCAACGTCAATTTTTTCCTCGATTCTATCACAGAA
121 ATCCATCGCAGAAGGAGTTGGATCAACGTCAATTTTTTCCTCGATTCTATCACAGAA
81409 TGAGGTAGAT
Statistics
Matches: 163, Mismatches: 11, Indels: 14
0.87 0.06 0.07
Matches are distributed among these distances:
180 46 0.28
181 3 0.02
182 4 0.02
183 6 0.04
186 1 0.01
189 65 0.40
190 38 0.23
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.31
Consensus pattern (181 bp):
AAGGAGTTGGATCAACGTCAACTTTTAGCTCGATTCTATCACAGAATGAGATAGGTCAGCAACAT
CTCGTTCCATTTCCATCACAGAAGGAGGTGGATCGACATTTTTATTTTCGCTCAAATCCATCGCA
GAAGGAGTTGGATCAACGTCAATTTTTTCCTCGATTCTATCACAGAAGAAG
Found at i:81507 original size:105 final size:105
Alignment explanation
Indices: 81325--81535 Score: 377
Period size: 105 Copynumber: 2.0 Consensus size: 105
81315 CGGAAGGAGG
* * *
81325 TGGATCGACATTTTTATTTTTGCTCAAATCCATCGCAGAAGGAGTTGGATCAACGTCAATTTTTT
1 TGGATCGACATTTTTATTTTCGCTCAAATCAATCGCAGAAGGAGTTGGATCAACGTCAACTTTTT
81390 CCTCGATTCTATCACAGAATGAGGTAGATCAGCATCGACA
66 CCTCGATTCTATCACAGAATGAGGTAGATCAGCATCGACA
*
81430 TGGATCGACATTTTTATTTTCGCTCAAATCAATCGCAGAAGGAGTTGGATCAGCGTCAACTTTTT
1 TGGATCGACATTTTTATTTTCGCTCAAATCAATCGCAGAAGGAGTTGGATCAACGTCAACTTTTT
*
81495 GCTCGATTCTATCACAGAATGAGGTAGATCAGCATCGACA
66 CCTCGATTCTATCACAGAATGAGGTAGATCAGCATCGACA
81535 T
1 T
81536 ATCGTTCGAT
Statistics
Matches: 101, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
105 101 1.00
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32
Consensus pattern (105 bp):
TGGATCGACATTTTTATTTTCGCTCAAATCAATCGCAGAAGGAGTTGGATCAACGTCAACTTTTT
CCTCGATTCTATCACAGAATGAGGTAGATCAGCATCGACA
Found at i:81591 original size:51 final size:51
Alignment explanation
Indices: 81510--81614 Score: 192
Period size: 51 Copynumber: 2.1 Consensus size: 51
81500 ATTCTATCAC
*
81510 AGAATGAGGTAGATCAGCATCGACATATCGTTCGATTTCCATCACAGAAAG
1 AGAAGGAGGTAGATCAGCATCGACATATCGTTCGATTTCCATCACAGAAAG
*
81561 AGAAGGAGGTAGATCAGCATCGACATATCGTTCGATTTCCATCACAGAAGG
1 AGAAGGAGGTAGATCAGCATCGACATATCGTTCGATTTCCATCACAGAAAG
81612 AGA
1 AGA
81615 TGGATCGAAA
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.35, C:0.19, G:0.24, T:0.22
Consensus pattern (51 bp):
AGAAGGAGGTAGATCAGCATCGACATATCGTTCGATTTCCATCACAGAAAG
Found at i:81706 original size:290 final size:294
Alignment explanation
Indices: 81136--81713 Score: 846
Period size: 290 Copynumber: 2.0 Consensus size: 294
81126 CAGAAGGAGG
* *
81136 TGGATCGACATTTTTATTTTCGCTCAAATCCATCGAGAAGGAGTTGGGTCAGCGTCAACTTTTTT
1 TGGATCGACATTTTTATTTTCGCTCAAATCAATCGAGAAGGAGTTGGATCAGCGTCAACTTTTTT
* * ** * * *
81201 GTCGATTCTATCACAGAAGAAGAAGGAGTTGGATCAGCGTCAATTTTTTGCTCGATTCTATCACA
66 GTCGATTCTATCACAGAAGAAGAAGGAGTTAGATCAGCATCAACATATCGCTCGATTCCATCACA
* * * *
81266 GAATGAGAATGAGGTAGATCAACATCGACATATCGTTCCATTTCCATCACGGAAGGAGGTGGATC
131 GAAAGAGAAGGAGGTAGATCAACATCGACATATCGTTCCATTTCCATCACAGAAGGAGATGGATC
* * * *
81331 GACATTTTTATTTTTGCTCAAATCCATCGCAGAAGGAGTTGGATCAACGTCAATTTTTTCCTCGA
196 GAAATTTTTATTTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAACGTCAACTTTTACCTCGA
*
81396 TTCTATCACAGAATGAGGTAGATCAGCATCGACA
261 TTCTATCACAGAAGGAGGTAGATCAGCATCGACA
81430 TGGATCGACATTTTTATTTTCGCTCAAATCAATCGCAGAAGGAGTTGGATCAGCGTCAAC-TTTT
1 TGGATCGACATTTTTATTTTCGCTCAAATCAATCG-AGAAGGAGTTGGATCAGCGTCAACTTTTT
* * *
81494 TGCTCGATTCTATCACAG-A-ATG-A-G-G-TAGATCAGCATCGACATATCGTTCGATTTCCATC
65 TG-TCGATTCTATCACAGAAGAAGAAGGAGTTAGATCAGCATCAACATATCGCTCGA-TTCCATC
* *
81553 ACAGAAAGAGAAGGAGGTAGATCAGCATCGACATATCGTTCGATTTCCATCACAGAAGGAGATGG
128 ACAGAAAGAGAAGGAGGTAGATCAACATCGACATATCGTTCCATTTCCATCACAGAAGGAGATGG
**
81618 ATCGAAATTTTTATTTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAACGTCAACTTTTAGTT
193 ATCGAAATTTTTATTTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAACGTCAACTTTTACCT
*
81683 CGATTCTATCGCAGAAGGAGGTAGATCAGCA
258 CGATTCTATCACAGAAGGAGGTAGATCAGCA
81714 ACATCTCGTT
Statistics
Matches: 255, Mismatches: 26, Indels: 10
0.88 0.09 0.03
Matches are distributed among these distances:
289 18 0.07
290 154 0.60
291 1 0.00
292 1 0.00
293 2 0.01
294 41 0.16
295 38 0.15
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.30
Consensus pattern (294 bp):
TGGATCGACATTTTTATTTTCGCTCAAATCAATCGAGAAGGAGTTGGATCAGCGTCAACTTTTTT
GTCGATTCTATCACAGAAGAAGAAGGAGTTAGATCAGCATCAACATATCGCTCGATTCCATCACA
GAAAGAGAAGGAGGTAGATCAACATCGACATATCGTTCCATTTCCATCACAGAAGGAGATGGATC
GAAATTTTTATTTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAACGTCAACTTTTACCTCGA
TTCTATCACAGAAGGAGGTAGATCAGCATCGACA
Found at i:81802 original size:130 final size:133
Alignment explanation
Indices: 81561--81876 Score: 471
Period size: 130 Copynumber: 2.4 Consensus size: 133
81551 TCACAGAAAG
81561 AGAAGGAGGTAGATCAGCATCGACATATCGTTCGATTTCCATCACAGAAGG-AGATGGATCGAAA
1 AGAAGGAGGTAGATCAGCA-C-ACATATCGTTCGATTTCCATCACAGAAGGAAGATGGATCGAAA
*
81625 TTTTTATTTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAACGTCAACTTTTAGTTCGATTCT
64 TTTTTATTTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAACGTCAACTTTTAGCTCGATTC-
*
81690 A-TCGC
128 AGTCAC
* * *
81695 AGAAGGAGGTAGATCAGCA-ACATCTCGTTCGA-TTCCATCATAGAAGGAAG-TGGATCGACATT
1 AGAAGGAGGTAGATCAGCACACATATCGTTCGATTTCCATCACAGAAGGAAGATGGATCGAAATT
* * * *
81757 TTTATTTTCGCTCAAATCCATCGTAGAAGGAGTTGGATCAGCGTCAAGTTTTTGCTCGATTCAGT
66 TTTATTTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAACGTCAACTTTTAGCTCGATTCAGT
81822 CAC
131 CAC
81825 AGAAGGAGGTAGATCAGCATCGACATATCGTTCGATTTCCATCACAGAAGGA
1 AGAAGGAGGTAGATCAGCA-C-ACATATCGTTCGATTTCCATCACAGAAGGA
81877 GGTAGATCAG
Statistics
Matches: 165, Mismatches: 11, Indels: 12
0.88 0.06 0.06
Matches are distributed among these distances:
129 1 0.01
130 104 0.63
131 14 0.08
133 12 0.07
134 34 0.21
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (133 bp):
AGAAGGAGGTAGATCAGCACACATATCGTTCGATTTCCATCACAGAAGGAAGATGGATCGAAATT
TTTATTTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAACGTCAACTTTTAGCTCGATTCAGT
CAC
Found at i:81885 original size:45 final size:44
Alignment explanation
Indices: 81497--81929 Score: 257
Period size: 45 Copynumber: 9.6 Consensus size: 44
81487 AACTTTTTGC
* *
81497 TCGATTCTATCACAGAATGAGGTAGATCAGCATCGACATATCGT
1 TCGATTCCATCACAGAAGGAGGTAGATCAGCATCGACATATCGT
81541 TCGATTTCCATCACAGAAAGAGAAGGAGGTAGATCAGCATCGACATATCGT
1 TCGA-TTCCATCAC------AGAAGGAGGTAGATCAGCATCGACATATCGT
* * * **** * *
81592 TCGATTTCCATCACAGAAGGAGATGGATC-GAAATTTTTATTTTCGC
1 TCGA-TTCCATCACAGAAGGAGGTAGATCAG-CATCGACA-TATCGT
* * * * * * * * * * *
81638 TCAAATCCATCGCAGAAGGAGTTGGATCAACGTCAACTTTTAGT
1 TCGATTCCATCACAGAAGGAGGTAGATCAGCATCGACATATCGT
* * *
81682 TCGATTCTATCGCAGAAGGAGGTAGATCAGCA---ACATCTCGT
1 TCGATTCCATCACAGAAGGAGGTAGATCAGCATCGACATATCGT
* * * **** * *
81723 TCGATTCCATCATAGAAGGAAGTGGATC-GACATTTTTATTTTCGC
1 TCGATTCCATCACAGAAGGAGGTAGATCAG-CATCGACA-TATCGT
* * ** * * * * ** * * *
81768 TCAAATCCATCGTAGAAGGAGTTGGATCAGCGTCAAGTTTTTGC
1 TCGATTCCATCACAGAAGGAGGTAGATCAGCATCGACATATCGT
81812 TCGATT-CAGTCACAGAAGGAGGTAGATCAGCATCGACATATCGT
1 TCGATTCCA-TCACAGAAGGAGGTAGATCAGCATCGACATATCGT
81856 TCGATTTCCATCACAGAAGGAGGTAGATCAGCATCGACATATCGT
1 TCGA-TTCCATCACAGAAGGAGGTAGATCAGCATCGACATATCGT
*
81901 TCGATTTCCATCACAGAAGGAGGTGGATC
1 TCGA-TTCCATCACAGAAGGAGGTAGATC
81930 GACATTTTTA
Statistics
Matches: 300, Mismatches: 70, Indels: 37
0.74 0.17 0.09
Matches are distributed among these distances:
40 1 0.00
41 31 0.10
43 2 0.01
44 72 0.24
45 140 0.47
46 10 0.03
51 44 0.15
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (44 bp):
TCGATTCCATCACAGAAGGAGGTAGATCAGCATCGACATATCGT
Found at i:81935 original size:179 final size:171
Alignment explanation
Indices: 81680--82059 Score: 557
Period size: 179 Copynumber: 2.2 Consensus size: 171
81670 TCAACTTTTA
* * *
81680 GTTCGATTCTATCGCAGAAGGAGGTAGATCAGCAACATCTCGTTCGATTCCATCATAGAAGGAAG
1 GTTCGATTCTATCACAGAAGGAGGTAGATCAGCAACATATCGTTCGATTCCATCACAGAAGGAAG
81745 TGGATCGACATTTTTATTTTCGCTCAAATCCATCGTAGAAGGAGTTGGATCAGCGTCAAG-TTTT
66 TGGATCGACATTTTTATTTTCGCTCAAATCCATCGTAGAAGGAGTTGGATCAGCGTC-AGCTTTT
*
81809 TGCTCGATTC-AGTCACAGAAGGAGGTAGATCAGCATCGACATATC
130 AGCTCGATTCTA-TCACAGAAGGAGGTAGATCAGCA---ACATATC
*
81854 GTTCGATTTCCATCACAGAAGGAGGTAGATCAGCATCGACATATCGTTCGATTTCCATCACAGAA
1 GTTCGA-TTCTATCACAGAAGGAGGTAGATCAGCA---ACATATCGTTCGA-TTCCATCACAGAA
* *
81919 GGAGGTGGATCGACATTTTTATTTTCGCTCAAATCCATCGTAGAAGGAGTTGGATTAGCGTCAGC
61 GGAAGTGGATCGACATTTTTATTTTCGCTCAAATCCATCGTAGAAGGAGTTGGATCAGCGTCAGC
* * *
81984 TTTTAGCTCGATTCTATCGCAGAAGGAGGTAGTTCAGCAACATCTC
126 TTTTAGCTCGATTCTATCACAGAAGGAGGTAGATCAGCAACATATC
*
82030 GTTCGATTCTATCACAGAAGGAGGTGGATC
1 GTTCGATTCTATCACAGAAGGAGGTAGATC
82060 GACATTTTTA
Statistics
Matches: 187, Mismatches: 12, Indels: 13
0.88 0.06 0.06
Matches are distributed among these distances:
174 6 0.03
175 48 0.26
176 12 0.06
178 14 0.07
179 106 0.57
180 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (171 bp):
GTTCGATTCTATCACAGAAGGAGGTAGATCAGCAACATATCGTTCGATTCCATCACAGAAGGAAG
TGGATCGACATTTTTATTTTCGCTCAAATCCATCGTAGAAGGAGTTGGATCAGCGTCAGCTTTTA
GCTCGATTCTATCACAGAAGGAGGTAGATCAGCAACATATC
Found at i:82001 original size:309 final size:308
Alignment explanation
Indices: 81430--82193 Score: 1199
Period size: 309 Copynumber: 2.5 Consensus size: 308
81420 AGCATCGACA
*
81430 TGGATCGACATTTTTATTTTCGCTCAAATCAATCGCAGAAGGAGTTGGATCAGCGTCAACTTTTT
1 TGGATCGACATTTTTATTTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAGCGTCAACTTTTT
*
81495 GCTCGATTCTATCACAGAATGAGGTAGATCAGCATCGACATATCGTTCGATTTCCATCACAGAAA
66 GCTCGATTC-ATCACAGAAAGAGGTAGATCAGCATCGACATATCGTTCGATTTCCATCAC-----
81560 GAGAAGGAGGTAGATCAGCATCGACATATCGTTCGATTTCCATCACAGAAGGAGATGGATCGAAA
125 -AGAAGGAGGTAGATCAGCATCGACATATCGTTCGATTTCCATCACAGAAGGAGATGGATCGAAA
*
81625 TTTTTATTTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAACGTCAACTTTTAGTTCGATTCT
189 TTTTTATTTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAACGTCAACTTTTAGCTCGATTCT
*
81690 ATCGCAGAAGGAGGTAGATCAGCAACATCTCGTTCGATTCCATCATAGAAGGAAG
254 ATCGCAGAAGGAGGTAGATCAGCAACATCTCGTTCGATTCCATCACAGAAGGAAG
* *
81745 TGGATCGACATTTTTATTTTCGCTCAAATCCATCGTAGAAGGAGTTGGATCAGCGTCAAGTTTTT
1 TGGATCGACATTTTTATTTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAGCGTCAACTTTTT
*
81810 GCTCGATTCAGTCACAGAAGGAGGTAGATCAGCATCGACATATCGTTCGATTTCCATCACAGAAG
66 GCTCGATTCA-TCACAGAAAGAGGTAGATCAGCATCGACATATCGTTCGATTTCCATCACAGAAG
* *
81875 GAGGTAGATCAGCATCGACATATCGTTCGATTTCCATCACAGAAGGAGGTGGATCGACATTTTTA
130 GAGGTAGATCAGCATCGACATATCGTTCGATTTCCATCACAGAAGGAGATGGATCGAAATTTTTA
* * * *
81940 TTTTCGCTCAAATCCATCGTAGAAGGAGTTGGATTAGCGTCAGCTTTTAGCTCGATTCTATCGCA
195 TTTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAACGTCAACTTTTAGCTCGATTCTATCGCA
* * *
82005 GAAGGAGGTAGTTCAGCAACATCTCGTTCGATTCTATCACAGAAGGAGG
260 GAAGGAGGTAGATCAGCAACATCTCGTTCGATTCCATCACAGAAGGAAG
*
82054 TGGATCGACATTTTTATTTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAGCGTCAACTTTTA
1 TGGATCGACATTTTTATTTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAGCGTCAACTTTTT
* * * * *
82119 GTTTGATTTTATCACAGAAAGAGGTAGATCAACA-CACACATATCGTTTCGA-TTCCATCACAGA
66 GCTCGA-TTCATCACAGAAAGAGGTAGATCAGCATC-GACATATCG-TTCGATTTCCATCACAGA
* *
82182 ATGAGGTGGATC
128 AGGAGGTAGATC
82194 GACATTTTCG
Statistics
Matches: 419, Mismatches: 26, Indels: 14
0.91 0.06 0.03
Matches are distributed among these distances:
308 1 0.00
309 290 0.69
310 8 0.02
314 1 0.00
315 119 0.28
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (308 bp):
TGGATCGACATTTTTATTTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAGCGTCAACTTTTT
GCTCGATTCATCACAGAAAGAGGTAGATCAGCATCGACATATCGTTCGATTTCCATCACAGAAGG
AGGTAGATCAGCATCGACATATCGTTCGATTTCCATCACAGAAGGAGATGGATCGAAATTTTTAT
TTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAACGTCAACTTTTAGCTCGATTCTATCGCAG
AAGGAGGTAGATCAGCAACATCTCGTTCGATTCCATCACAGAAGGAAG
Found at i:82063 original size:130 final size:131
Alignment explanation
Indices: 81856--82201 Score: 496
Period size: 130 Copynumber: 2.6 Consensus size: 131
81846 GACATATCGT
*
81856 TCGATTTCCATCACAGAAGGAGGTAGATCAGCATCGACATATCGTTCGATTTCCATCACAGAAGG
1 TCGA-TTCTATCACAGAAGGAGGTAGATCAGCA-C-ACATATCGTTCGA-TTCCATCACAGAAGG
* * *
81921 AGGTGGATCGACATTTTTATTTTCGCTCAAATCCATCGTAGAAGGAGTTGGATTAGCGTCAGCTT
62 AGGTGGATCGACATTTTTATTTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAGCGTCAACTT
81986 TTAGC
127 TTAGC
* * * *
81991 TCGATTCTATCGCAGAAGGAGGTAGTTCAGCA-ACATCTCGTTCGATTCTATCACAGAAGGAGGT
1 TCGATTCTATCACAGAAGGAGGTAGATCAGCACACATATCGTTCGATTCCATCACAGAAGGAGGT
82055 GGATCGACATTTTTATTTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAGCGTCAACTTTTAG
66 GGATCGACATTTTTATTTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAGCGTCAACTTTTAG
*
82120 T
131 C
* * * * *
82121 TTGATTTTATCACAGAAAGAGGTAGATCAACACACACATATCGTTTCGATTCCATCACAGAATGA
1 TCGATTCTATCACAGAAGGAGGTAGATC-A-GCACACATATCG-TTCGATTCCATCACAGAAGGA
82186 GGTGGATCGACATTTT
63 GGTGGATCGACATTTT
82202 CGATTCATCA
Statistics
Matches: 189, Mismatches: 18, Indels: 9
0.88 0.08 0.04
Matches are distributed among these distances:
130 103 0.54
131 13 0.07
132 2 0.01
133 7 0.04
134 60 0.32
135 4 0.02
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.30
Consensus pattern (131 bp):
TCGATTCTATCACAGAAGGAGGTAGATCAGCACACATATCGTTCGATTCCATCACAGAAGGAGGT
GGATCGACATTTTTATTTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAGCGTCAACTTTTAG
C
Found at i:89219 original size:75 final size:76
Alignment explanation
Indices: 89130--89291 Score: 236
Period size: 76 Copynumber: 2.1 Consensus size: 76
89120 ATCTCACTTG
* * *
89130 AGATTGTTTTTCTTAAAACAGATTTTGTCTCACTTAAGAC-AGTTTTACTCGAAAGAAGACATTT
1 AGATTGTTTTTCTTAAAACAAAATTTGTCTCACTTAAGACAAGTTTTACTCCAAAGAAGACATTT
*
89194 CATTTGACTCA
66 CATTTCACTCA
** * * *
89205 AGATTGTTTTTCTTAAAACAAAATTTGTCTTTCTTGAGACAATTTTTACTCCAAAGAATACATTT
1 AGATTGTTTTTCTTAAAACAAAATTTGTCTCACTTAAGACAAGTTTTACTCCAAAGAAGACATTT
89270 CATTTCACTCA
66 CATTTCACTCA
89281 AGATTGTTTTT
1 AGATTGTTTTT
89292 AAAGAAGATT
Statistics
Matches: 77, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
75 35 0.45
76 42 0.55
ACGTcount: A:0.31, C:0.15, G:0.11, T:0.42
Consensus pattern (76 bp):
AGATTGTTTTTCTTAAAACAAAATTTGTCTCACTTAAGACAAGTTTTACTCCAAAGAAGACATTT
CATTTCACTCA
Found at i:89354 original size:39 final size:39
Alignment explanation
Indices: 89294--89528 Score: 308
Period size: 39 Copynumber: 6.0 Consensus size: 39
89284 TTGTTTTTAA
** *
89294 AGAAGATTTTATCTTACTTGAGATAATTTCCCTCGAAAC
1 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
* * * ** *
89333 AGAAGAGTCTGTCTCATTTGAGATAGTTTCTCTCGAAAC
1 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
* *
89372 ATAAAATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
1 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
* * *
89411 ATAATATTTTATCTCGCTTGAGATAGTTTCCCTTGAAAC
1 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
89450 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
1 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
* * * *
89489 AGGAGATTTTATCTCTCTTGAGATAGTTTCTCTTGAAAC
1 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
89528 A
1 A
89529 CCAATCTTTA
Statistics
Matches: 172, Mismatches: 24, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 172 1.00
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.37
Consensus pattern (39 bp):
AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
Found at i:89591 original size:67 final size:67
Alignment explanation
Indices: 89467--89727 Score: 416
Period size: 67 Copynumber: 3.9 Consensus size: 67
89457 TTTATCTCGC
* * * * * *
89467 TTGAGATAGTTTCCCTCGAAACAGGAGATTTTATCTCTCTTGAGATAGTTTCTCTTGAAACACCA
1 TTGAGATTGTTTCCCTTGAAACA-AAG-TTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACACCA
89532 ATCT
64 ATCT
*
89536 TTAAGATTGTTTCCCTTGAAACAAAGTTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACACCAAT
1 TTGAGATTGTTTCCCTTGAAACAAAGTTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACACCAAT
89601 CT
66 CT
89603 TTGAGATTGTTTCCCTTGAAACAAAGTTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACACCAAT
1 TTGAGATTGTTTCCCTTGAAACAAAGTTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACACCAAT
*
89668 AT
66 CT
*
89670 TTGAGATTGTTTCCCTTGAAACAAA-TTTTGTCTCCCTTGAGACAGTTTCCCTTGAAAC
1 TTGAGATTGTTTCCCTTGAAACAAAGTTTTGTCTCTCTTGAGACAGTTTCCCTTGAAAC
89728 GAATTTTGTC
Statistics
Matches: 182, Mismatches: 10, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
66 32 0.18
67 128 0.70
68 2 0.01
69 20 0.11
ACGTcount: A:0.26, C:0.21, G:0.15, T:0.37
Consensus pattern (67 bp):
TTGAGATTGTTTCCCTTGAAACAAAGTTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACACCAAT
CT
Found at i:89607 original size:30 final size:30
Alignment explanation
Indices: 89573--89692 Score: 100
Period size: 30 Copynumber: 3.8 Consensus size: 30
89563 TTTGTCTCTC
89573 TTGAGACAGTTTCCCTTGAAACACCAATCT
1 TTGAGACAGTTTCCCTTGAAACACCAATCT
**
89603 TTGAGATTGTTTCCCTTGAAACA--AAGTTTTGTCTCT
1 TTGAGACAGTTTCCCTTGAAACACCAA--------TCT
*
89639 CTTGAGACAGTTTCCCTTGAAACACCAATAT
1 -TTGAGACAGTTTCCCTTGAAACACCAATCT
**
89670 TTGAGATTGTTTCCCTTGAAACA
1 TTGAGACAGTTTCCCTTGAAACA
89693 AATTTTGTCT
Statistics
Matches: 72, Mismatches: 7, Indels: 22
0.71 0.07 0.22
Matches are distributed among these distances:
28 2 0.03
30 42 0.58
31 2 0.03
36 3 0.04
37 21 0.29
39 2 0.03
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.36
Consensus pattern (30 bp):
TTGAGACAGTTTCCCTTGAAACACCAATCT
Found at i:89737 original size:36 final size:36
Alignment explanation
Indices: 89678--89764 Score: 147
Period size: 36 Copynumber: 2.4 Consensus size: 36
89668 ATTTGAGATT
89678 GTTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACA
1 GTTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACA
* *
89714 GTTTCCCTTGAAACGAATTTTGTCTCTCTTGAGACA
1 GTTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACA
*
89750 GTTTTCCTTGAAACA
1 GTTTCCCTTGAAACA
89765 CCGATCTTTG
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 47 1.00
ACGTcount: A:0.24, C:0.23, G:0.15, T:0.38
Consensus pattern (36 bp):
GTTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACA
Found at i:89751 original size:102 final size:103
Alignment explanation
Indices: 89611--89830 Score: 345
Period size: 102 Copynumber: 2.1 Consensus size: 103
89601 CTTTGAGATT
89611 GTTTCCCTTGAAACAAAGTTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACACCAATATTTGAGA
1 GTTTCCCTTGAAACAAAGTTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACACCAATATTTGAGA
** *
89676 TTGTTTCCCTTGAAAC-AAATTTTGTCTCCCTTGAGACA
66 TCATTTCCCTTG-AACTAAATTTTGTCTCCCTGGAGACA
* * * *
89714 GTTTCCCTTGAAACGAA-TTTTGTCTCTCTTGAGACAGTTTTCCTTGAAACACCGATCTTTGAGA
1 GTTTCCCTTGAAACAAAGTTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACACCAATATTTGAGA
89778 TCATTTCCCTTGAACTAAATTTTGTCTCCCTGGAGACA
66 TCATTTCCCTTGAACTAAATTTTGTCTCCCTGGAGACA
*
89816 GTTTCTCTTGAAACA
1 GTTTCCCTTGAAACA
89831 CAAAAACTTT
Statistics
Matches: 107, Mismatches: 9, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
101 3 0.03
102 88 0.82
103 16 0.15
ACGTcount: A:0.25, C:0.23, G:0.15, T:0.37
Consensus pattern (103 bp):
GTTTCCCTTGAAACAAAGTTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACACCAATATTTGAGA
TCATTTCCCTTGAACTAAATTTTGTCTCCCTGGAGACA
Found at i:89776 original size:66 final size:66
Alignment explanation
Indices: 89706--89831 Score: 177
Period size: 66 Copynumber: 1.9 Consensus size: 66
89696 TTTGTCTCCC
* * *
89706 TTGAGA-CAGTTTCCCTTGAAAC-GAATTTTGTCTCTCTTGAGACAGTTT-TCCTTGAAACACCG
1 TTGAGATCA-TTTCCCTTG-AACTAAATTTTGTCTCCCTGGAGACAGTTTCT-CTTGAAACACCG
89768 ATCT
63 ATCT
89772 TTGAGATCATTTCCCTTGAACTAAATTTTGTCTCCCTGGAGACAGTTTCTCTTGAAACAC
1 TTGAGATCATTTCCCTTGAACTAAATTTTGTCTCCCTGGAGACAGTTTCTCTTGAAACAC
89832 AAAAACTTTG
Statistics
Matches: 54, Mismatches: 3, Indels: 6
0.86 0.05 0.10
Matches are distributed among these distances:
65 3 0.06
66 48 0.89
67 3 0.06
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.37
Consensus pattern (66 bp):
TTGAGATCATTTCCCTTGAACTAAATTTTGTCTCCCTGGAGACAGTTTCTCTTGAAACACCGATC
T
Found at i:90345 original size:45 final size:45
Alignment explanation
Indices: 90278--90490 Score: 121
Period size: 45 Copynumber: 4.6 Consensus size: 45
90268 AACTTTTTGC
* *
90278 TCGA-TTCTATCACAGAATGAGGTAGATCAGCATCAACATATCGT
1 TCGATTTCCATCACAGAAGGAGGTAGATCAGCATCAACATATCGT
* **** * *
90322 TCGATTTCCATCACAGAAGGAGGTGGATC-GACATTTTTATTTTCGC
1 TCGATTTCCATCACAGAAGGAGGTAGATCAG-CATCAACA-TATCGT
** * * * * * * * *
90368 TC-AAATCCATCGCAGAAGGAGTTGGATCAACGTCAACTTTTAGT
1 TCGATTTCCATCACAGAAGGAGGTAGATCAGCATCAACATATCGT
* *
90412 TCGATTAT--ATCACAGAATGAGAAGAAGGTAGATCAGCATCGACATATCAT
1 TCGATT-TCCATCACAG-A--AG--G-AGGTAGATCAGCATCAACATATCGT
90462 TCGATTTCCATCACAGAAGGAGGTAGATC
1 TCGATTTCCATCACAGAAGGAGGTAGATC
90491 GACATTTTTA
Statistics
Matches: 121, Mismatches: 34, Indels: 27
0.66 0.19 0.15
Matches are distributed among these distances:
44 17 0.14
45 60 0.50
46 8 0.07
47 2 0.02
48 2 0.02
49 2 0.02
50 23 0.19
51 7 0.06
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (45 bp):
TCGATTTCCATCACAGAAGGAGGTAGATCAGCATCAACATATCGT
Found at i:90512 original size:140 final size:139
Alignment explanation
Indices: 90297--90711 Score: 638
Period size: 140 Copynumber: 3.0 Consensus size: 139
90287 TCACAGAATG
90297 AGGTAGATCAGCATCAACATATCGTTCGATTTCCATCACAGAAGGAGGTGGATCGACATTTTTAT
1 AGGTAGATCAGCATC-ACATATCGTTCGATTTCCATCACAGAAGGAGGTGGATCGACATTTTTAT
*
90362 TTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAACGTCAACTTTTAGTTCGATTATATCACAG
65 TTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAGCGTCAACTTTTAGTTCGATTATATCACAG
90427 AATGAGAAGA
130 AATGAGAAGA
* *
90437 AGGTAGATCAGCATCGACATATCATTCGATTTCCATCACAGAAGGAGGTAGATCGACATTTTTAT
1 AGGTAGATCAGCATC-ACATATCGTTCGATTTCCATCACAGAAGGAGGTGGATCGACATTTTTAT
* * * *
90502 TTTCGCTCAAATCCATCGTAGAAGGAGTTGGATCAGCGTCAACTTTTAGCTCGATTCTATCGCAG
65 TTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAGCGTCAACTTTTAGTTCGATTATATCACAG
*
90567 AATGAGAAGT
130 AATGAGAAGA
* *
90577 AGGCAGATCAGCA--ACATCTCGTTCGA-TTCCATCACAGAAGGAGGTGGATCGACATTTTTATT
1 AGGTAGATCAGCATCACATATCGTTCGATTTCCATCACAGAAGGAGGTGGATCGACATTTTTATT
* * * * * *
90639 TTCGCTCAAATCTATCGCAGAATGAGTTGGATCAGTGTCAACTTTTAGTTTGATTTTATCACAAA
66 TTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAGCGTCAACTTTTAGTTCGATTATATCACAGA
*
90704 AAGAGAAG
131 ATGAGAAG
90712 GACTTCGATC
Statistics
Matches: 252, Mismatches: 23, Indels: 4
0.90 0.08 0.01
Matches are distributed among these distances:
136 98 0.39
137 11 0.04
140 143 0.57
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (139 bp):
AGGTAGATCAGCATCACATATCGTTCGATTTCCATCACAGAAGGAGGTGGATCGACATTTTTATT
TTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAGCGTCAACTTTTAGTTCGATTATATCACAGA
ATGAGAAGA
Found at i:90829 original size:180 final size:184
Alignment explanation
Indices: 90521--90864 Score: 534
Period size: 180 Copynumber: 1.9 Consensus size: 184
90511 AATCCATCGT
* * *
90521 AGAAGGAGTTGGATCAGCGTCAACTTTTAGCTCGATTCTATCGCAGAATGAGAAGTAGGCAGATC
1 AGAAGGACTTCGATCAGCGTCAACTTTTAGCTCGATTCTATC-CAG-ATGAGAAGGAGGCAGATC
90586 AGCAACATCTCGTTCGATTCCATCACAGAAGGAGGTGGATCGACATTTTTATTTTCGCTCAAATC
64 AGCAACATCTCGTTCGATTCCATCACAGAAGGAGGTGGATCGACATTTTTATTTTCGCTCAAATC
* * *
90651 TATCGCAGAATGAGTTGGATCAGTGTCAACTTTTAGTTTGATTTTATCACAAAAAG
129 CATCGCAGAAGGAGTTGGATCAGCGTCAACTTTTAGTTTGATTTTATCACAAAAAG
* * *
90707 AGAAGGACTTCGATCAGCGTCAACTTTTAGTTCGATTCTAT-C-G-T-AGAAGGAGGTAGATTAG
1 AGAAGGACTTCGATCAGCGTCAACTTTTAGCTCGATTCTATCCAGATGAGAAGGAGGCAGATCAG
* * *
90768 GAACATCTCGTTCGATTTCATCACAGAATGAGGTGGATCGACATTTTTATTTTCGCTCAAATCCA
66 CAACATCTCGTTCGATTCCATCACAGAAGGAGGTGGATCGACATTTTTATTTTCGCTCAAATCCA
90833 TCGCAGAAGGAGTTGGATCAGCGTCAACTTTT
131 TCGCAGAAGGAGTTGGATCAGCGTCAACTTTT
90865 TGCTCGATTC
Statistics
Matches: 146, Mismatches: 12, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
180 105 0.72
181 1 0.01
183 1 0.01
184 1 0.01
186 38 0.26
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (184 bp):
AGAAGGACTTCGATCAGCGTCAACTTTTAGCTCGATTCTATCCAGATGAGAAGGAGGCAGATCAG
CAACATCTCGTTCGATTCCATCACAGAAGGAGGTGGATCGACATTTTTATTTTCGCTCAAATCCA
TCGCAGAAGGAGTTGGATCAGCGTCAACTTTTAGTTTGATTTTATCACAAAAAG
Found at i:90967 original size:45 final size:45
Alignment explanation
Indices: 90786--91118 Score: 150
Period size: 45 Copynumber: 7.5 Consensus size: 45
90776 CGTTCGATTT
* * *
90786 CATCACAGAATGAGGTGGATC-GACATTTTTATTTTCGCTCAAATC
1 CATCACAGAAGGAGGTGGATCAG-CATGTTTATTTTTGCTCAAATC
* * ** * *
90831 CATCGCAGAAGGAGTTGGATCAGC--GTCAACTTTTTGCTCGATTC
1 CATCACAGAAGGAGGTGGATCAGCATGTTTA-TTTTTGCTCAAATC
* * ** ** * **
90875 TATCACAGAAGGAGGTAGATCAGCATCGACATATCGTT-C-GATTTC
1 CATCACAGAAGGAGGTGGATCAGCAT-G-TTTATTTTTGCTCAAATC
90920 CATCACAGAAGGAGGTGGATC-GACATGTTTATTTTTGCTCAAATC
1 CATCACAGAAGGAGGTGGATCAG-CATGTTTATTTTTGCTCAAATC
* * * * ** * * *
90965 CATCGCAGAAGTAGTTGGATTAGC--GTCAACTTTTAGCTCGATTC
1 CATCACAGAAGGAGGTGGATCAGCATGTTTA-TTTTTGCTCAAATC
* * * ** * * * * *
91009 TATCGCAGAAGGAGGTAGATCAGCA---ACA-TCTCGTTCGATTC
1 CATCACAGAAGGAGGTGGATCAGCATGTTTATTTTTGCTCAAATC
* * *
91050 CATCACAGAAGGAGGTGGATCAACATTTTTATTTTCGCTCAAATC
1 CATCACAGAAGGAGGTGGATCAGCATGTTTATTTTTGCTCAAATC
* *
91095 CATCGCAGAAGGAGTTGGATCAGC
1 CATCACAGAAGGAGGTGGATCAGC
91119 GTCAACTTTT
Statistics
Matches: 210, Mismatches: 62, Indels: 32
0.69 0.20 0.11
Matches are distributed among these distances:
41 31 0.15
43 11 0.05
44 65 0.31
45 95 0.45
46 3 0.01
47 4 0.02
48 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (45 bp):
CATCACAGAAGGAGGTGGATCAGCATGTTTATTTTTGCTCAAATC
Found at i:91008 original size:264 final size:265
Alignment explanation
Indices: 90718--91337 Score: 1000
Period size: 264 Copynumber: 2.3 Consensus size: 265
90708 GAAGGACTTC
* * * *
90718 GATCAGCGTCAACTTTTAGTTCGATTCTATCGTAGAAGGAGGTAGATTAGGAACATCTCGTTCGA
1 GATCAGCGTCAACTTTTAGCTCGATTCTATCGCAGAAGGAGGTAGATCAGCAACATCTCGTTCGA
* *
90783 TTTCATCACAGAATGAGGTGGATCGACATTTTTATTTTCGCTCAAATCCATCGCAGAAGGAGTTG
66 TTCCATCACAGAAGGAGGTGGATCGACATTTTTATTTTCGCTCAAATCCATCGCAGAAGGAGTTG
* *
90848 GATCAGCGTCAACTTTTTGCTCGATTCTATCACAGAA-G-G-AGGTAGATCAGCATC-G-ACATA
131 GATCAGCGTCAACTTTTAGCTCGATTCTATCACAGAATGAGAAGG-AG-GCAG-ATCAGAACATA
*
90908 TCGTTCGATTTCCATCACAGAAGGAGGTGGATCGACATGTTTATTTTTGCTCAAATCCATCGCAG
193 TCGTTCGA-TTCCATCACAGAAGGAGGTGGATCGACATGTTTATTTTCGCTCAAATCCATCGCAG
90973 AA-GTAGTTG
257 AATG-AGTTG
*
90982 GATTAGCGTCAACTTTTAGCTCGATTCTATCGCAGAAGGAGGTAGATCAGCAACATCTCGTTCGA
1 GATCAGCGTCAACTTTTAGCTCGATTCTATCGCAGAAGGAGGTAGATCAGCAACATCTCGTTCGA
*
91047 TTCCATCACAGAAGGAGGTGGATCAACATTTTTATTTTCGCTCAAATCCATCGCAGAAGGAGTTG
66 TTCCATCACAGAAGGAGGTGGATCGACATTTTTATTTTCGCTCAAATCCATCGCAGAAGGAGTTG
* *
91112 GATCAGCGTCAACTTTTAGCTCGATTCTATCGCAGAATGAGAAGGAGGCAGATCAGCAACATCTC
131 GATCAGCGTCAACTTTTAGCTCGATTCTATCACAGAATGAGAAGGAGGCAGATCAG-AACATATC
* *
91177 GTTCGATTCCATCACAGAAGGAGGTGGATCGACATTTTTATTTTCGCTCAAATCTATCGCAGAAT
195 GTTCGATTCCATCACAGAAGGAGGTGGATCGACATGTTTATTTTCGCTCAAATCCATCGCAGAAT
91242 GAGTTG
260 GAGTTG
*
91248 GATCAGCGTCAACTTTTAGCTCGATTCTATCGCAGAAGGAGGTAGATCAGTAACATCTCGTTCGA
1 GATCAGCGTCAACTTTTAGCTCGATTCTATCGCAGAAGGAGGTAGATCAGCAACATCTCGTTCGA
91313 TTCCATCACAGAAGGAGGTGGATCG
66 TTCCATCACAGAAGGAGGTGGATCG
91338 CAAAAAGTTG
Statistics
Matches: 331, Mismatches: 18, Indels: 12
0.92 0.05 0.03
Matches are distributed among these distances:
264 160 0.48
265 5 0.02
266 150 0.45
267 16 0.05
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (265 bp):
GATCAGCGTCAACTTTTAGCTCGATTCTATCGCAGAAGGAGGTAGATCAGCAACATCTCGTTCGA
TTCCATCACAGAAGGAGGTGGATCGACATTTTTATTTTCGCTCAAATCCATCGCAGAAGGAGTTG
GATCAGCGTCAACTTTTAGCTCGATTCTATCACAGAATGAGAAGGAGGCAGATCAGAACATATCG
TTCGATTCCATCACAGAAGGAGGTGGATCGACATGTTTATTTTCGCTCAAATCCATCGCAGAATG
AGTTG
Found at i:91111 original size:130 final size:130
Alignment explanation
Indices: 90707--91337 Score: 992
Period size: 130 Copynumber: 4.8 Consensus size: 130
90697 TCACAAAAAG
* * * * * *
90707 AGAAGGACTTCGATCAGCGTCAACTTTTAGTTCGATTCTATCGTAGAAGGAGGTAGATTAGGAAC
1 AGAAGGAGTTGGATCAGCGTCAACTTTTAGCTCGATTCTATCGCAGAAGGAGGTAGATCAGCAAC
* *
90772 ATCTCGTTCGATTTCATCACAGAATGAGGTGGATCGACATTTTTATTTTCGCTCAAATCCATCGC
66 ATCTCGTTCGATTCCATCACAGAAGGAGGTGGATCGACATTTTTATTTTCGCTCAAATCCATCGC
* *
90837 AGAAGGAGTTGGATCAGCGTCAACTTTTTGCTCGATTCTATCACAGAAGGAGGTAGATCAGCATC
1 AGAAGGAGTTGGATCAGCGTCAACTTTTAGCTCGATTCTATCGCAGAAGGAGGTAGATCAGCA--
* * *
90902 GACATATCGTTCGATTTCCATCACAGAAGGAGGTGGATCGACATGTTTATTTTTGCTCAAATCCA
64 -ACATCTCGTTCGA-TTCCATCACAGAAGGAGGTGGATCGACATTTTTATTTTCGCTCAAATCCA
90967 TCGC
127 TCGC
* *
90971 AGAAGTAGTTGGATTAGCGTCAACTTTTAGCTCGATTCTATCGCAGAAGGAGGTAGATCAGCAAC
1 AGAAGGAGTTGGATCAGCGTCAACTTTTAGCTCGATTCTATCGCAGAAGGAGGTAGATCAGCAAC
*
91036 ATCTCGTTCGATTCCATCACAGAAGGAGGTGGATCAACATTTTTATTTTCGCTCAAATCCATCGC
66 ATCTCGTTCGATTCCATCACAGAAGGAGGTGGATCGACATTTTTATTTTCGCTCAAATCCATCGC
*
91101 AGAAGGAGTTGGATCAGCGTCAACTTTTAGCTCGATTCTATCGCAGAATGAGAAGGAGGCAGATC
1 AGAAGGAGTTGGATCAGCGTCAACTTTTAGCTCGATTCTATCGC------AGAAGGAGGTAGATC
91166 AGCAACATCTCGTTCGATTCCATCACAGAAGGAGGTGGATCGACATTTTTATTTTCGCTCAAATC
60 AGCAACATCTCGTTCGATTCCATCACAGAAGGAGGTGGATCGACATTTTTATTTTCGCTCAAATC
*
91231 TATCGC
125 CATCGC
* *
91237 AGAATGAGTTGGATCAGCGTCAACTTTTAGCTCGATTCTATCGCAGAAGGAGGTAGATCAGTAAC
1 AGAAGGAGTTGGATCAGCGTCAACTTTTAGCTCGATTCTATCGCAGAAGGAGGTAGATCAGCAAC
91302 ATCTCGTTCGATTCCATCACAGAAGGAGGTGGATCG
66 ATCTCGTTCGATTCCATCACAGAAGGAGGTGGATCG
91338 CAAAAAGTTG
Statistics
Matches: 462, Mismatches: 29, Indels: 20
0.90 0.06 0.04
Matches are distributed among these distances:
130 203 0.44
131 12 0.03
133 12 0.03
134 109 0.24
136 126 0.27
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (130 bp):
AGAAGGAGTTGGATCAGCGTCAACTTTTAGCTCGATTCTATCGCAGAAGGAGGTAGATCAGCAAC
ATCTCGTTCGATTCCATCACAGAAGGAGGTGGATCGACATTTTTATTTTCGCTCAAATCCATCGC
Found at i:91660 original size:130 final size:130
Alignment explanation
Indices: 91340--92024 Score: 1154
Period size: 130 Copynumber: 5.2 Consensus size: 130
91330 GTGGATCGCA
*
91340 AAAAGTTGACGCTGATCCAACTCCTTCTGCGATGGATTTGAGCGAAAATAAAAATATCGATCCAC
1 AAAAGTTGACGCTGATCCAACTCCTTCTGCGATGGATTTGAGCGAAAATAAAAATGTCGATCCAC
*
91405 CTCCTTCTGTGATGGAATCGAACGAGATGTCGATGCTGATCTACCTCCTTCTGTGATAGAATCGA
66 CTCCTTCTGTGATGGAATCGAACGAGATGT---TGCTGATCTACCTCCTTCTGCGATAGAATCGA
*
91470 GCA
128 GCT
91473 AAAAGTTGACGCTGATCCAACTCCTTCTGCGATGGATTTGAGCGAAAATAAAAATGTCGATCCAC
1 AAAAGTTGACGCTGATCCAACTCCTTCTGCGATGGATTTGAGCGAAAATAAAAATGTCGATCCAC
* * *
91538 ATCCTTCTGTGATGGAATCGAACGAGATGTTGCTGATCTACCTCCTTCTGCGATAGAATCAAACT
66 CTCCTTCTGTGATGGAATCGAACGAGATGTTGCTGATCTACCTCCTTCTGCGATAGAATCGAGCT
91603 AAAAGTTGACGCTGATCCAACTCCTTCTGCGATGGATTTGAGCGAAAATAAAAATGTCGATCCAC
1 AAAAGTTGACGCTGATCCAACTCCTTCTGCGATGGATTTGAGCGAAAATAAAAATGTCGATCCAC
* *
91668 CTCTTTCTGTGATGGAATCGAACGAGATGTTACTGATCTACCTCCTTCTGCGATAGAATCGAGCT
66 CTCCTTCTGTGATGGAATCGAACGAGATGTTGCTGATCTACCTCCTTCTGCGATAGAATCGAGCT
*
91733 AAAAGTTGACGCTAATCCAACTCCTTCTGCGATGGATTTGAGCGAAAATAAAAATGTCGATCCAC
1 AAAAGTTGACGCTGATCCAACTCCTTCTGCGATGGATTTGAGCGAAAATAAAAATGTCGATCCAC
* * *
91798 CTCCTTCTGTGATGGAAATCGAACGATATATCGATGCTGATCTACCTCCTTCTGTGATAGAATCG
66 CTCCTTCTGTGATGG-AATCGAACG--AGAT-GTTGCTGATCTACCTCCTTCTGCGATAGAATCG
*
91863 AGCA
127 AGCT
*
91867 AAAAGTTAACGCTGATCCAACTCCTTCTGCGATGGATTTGAGCGAAAATAAAAATGTCGATCCAC
1 AAAAGTTGACGCTGATCCAACTCCTTCTGCGATGGATTTGAGCGAAAATAAAAATGTCGATCCAC
* *
91932 CTCCTTCTGTGATGGAATCGAACGAGATGTTTCTGATCTACCTCCTTCTGCGATAGAATCGAACT
66 CTCCTTCTGTGATGGAATCGAACGAGATGTTGCTGATCTACCTCCTTCTGCGATAGAATCGAGCT
*
91997 AAAAGTTGACGCTGATCCAAGTCCTTCT
1 AAAAGTTGACGCTGATCCAACTCCTTCT
92025 CTTTCTGTGA
Statistics
Matches: 520, Mismatches: 28, Indels: 11
0.93 0.05 0.02
Matches are distributed among these distances:
130 292 0.56
131 12 0.02
133 105 0.20
134 111 0.21
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (130 bp):
AAAAGTTGACGCTGATCCAACTCCTTCTGCGATGGATTTGAGCGAAAATAAAAATGTCGATCCAC
CTCCTTCTGTGATGGAATCGAACGAGATGTTGCTGATCTACCTCCTTCTGCGATAGAATCGAGCT
Found at i:91950 original size:264 final size:260
Alignment explanation
Indices: 91337--92024 Score: 1160
Period size: 264 Copynumber: 2.6 Consensus size: 260
91327 GAGGTGGATC
*
91337 GCAAAAAGTTGACGCTGATCCAACTCCTTCTGCGATGGATTTGAGCGAAAATAAAAATATCGATC
1 GCAAAAAGTTGACGCTGATCCAACTCCTTCTGCGATGGATTTGAGCGAAAATAAAAATGTCGATC
* *
91402 CACCTCCTTCTGTGATGGAATCGAACGAGATGTCGATGCTGATCTACCTCCTTCTGTGATAGAAT
66 CACCTCCTTCTGTGATGGAATCGAACGAGATGT---TACTGATCTACCTCCTTCTGCGATAGAAT
*
91467 CGAGCAAAAAGTTGACGCTGATCCAACTCCTTCTGCGATGGATTTGAGCGAAAATAAAAATGTCG
128 CGAGCTAAAAGTTGACGCTGATCCAACTCCTTCTGCGATGGATTTGAGCGAAAATAAAAATGTCG
*
91532 ATCCACATCCTTCTGTGATGGAATCGAACGAGATGTTGCTGATCTACCTCCTTCTGCGATAGAAT
193 ATCCACATCCTTCTGTGATGGAATCGAACGAGATGATGCTGATCTACCTCCTTCTGCGATAGAAT
91597 CAA
258 CAA
* *
91600 ACTAAAAGTTGACGCTGATCCAACTCCTTCTGCGATGGATTTGAGCGAAAATAAAAATGTCGATC
1 GCAAAAAGTTGACGCTGATCCAACTCCTTCTGCGATGGATTTGAGCGAAAATAAAAATGTCGATC
*
91665 CACCTCTTTCTGTGATGGAATCGAACGAGATGTTACTGATCTACCTCCTTCTGCGATAGAATCGA
66 CACCTCCTTCTGTGATGGAATCGAACGAGATGTTACTGATCTACCTCCTTCTGCGATAGAATCGA
*
91730 GCTAAAAGTTGACGCTAATCCAACTCCTTCTGCGATGGATTTGAGCGAAAATAAAAATGTCGATC
131 GCTAAAAGTTGACGCTGATCCAACTCCTTCTGCGATGGATTTGAGCGAAAATAAAAATGTCGATC
* * *
91795 CACCTCCTTCTGTGATGGAAATCGAACGATATATCGATGCTGATCTACCTCCTTCTGTGATAGAA
196 CACATCCTTCTGTGATGG-AATCGAACG--AGAT-GATGCTGATCTACCTCCTTCTGCGATAGAA
*
91860 TCGA
257 TCAA
*
91864 GCAAAAAGTTAACGCTGATCCAACTCCTTCTGCGATGGATTTGAGCGAAAATAAAAATGTCGATC
1 GCAAAAAGTTGACGCTGATCCAACTCCTTCTGCGATGGATTTGAGCGAAAATAAAAATGTCGATC
*
91929 CACCTCCTTCTGTGATGGAATCGAACGAGATGTTTCTGATCTACCTCCTTCTGCGATAGAATCGA
66 CACCTCCTTCTGTGATGGAATCGAACGAGATGTTACTGATCTACCTCCTTCTGCGATAGAATCGA
* *
91994 ACTAAAAGTTGACGCTGATCCAAGTCCTTCT
131 GCTAAAAGTTGACGCTGATCCAACTCCTTCT
92025 CTTTCTGTGA
Statistics
Matches: 400, Mismatches: 21, Indels: 7
0.93 0.05 0.02
Matches are distributed among these distances:
260 110 0.28
261 9 0.02
263 97 0.24
264 184 0.46
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.28
Consensus pattern (260 bp):
GCAAAAAGTTGACGCTGATCCAACTCCTTCTGCGATGGATTTGAGCGAAAATAAAAATGTCGATC
CACCTCCTTCTGTGATGGAATCGAACGAGATGTTACTGATCTACCTCCTTCTGCGATAGAATCGA
GCTAAAAGTTGACGCTGATCCAACTCCTTCTGCGATGGATTTGAGCGAAAATAAAAATGTCGATC
CACATCCTTCTGTGATGGAATCGAACGAGATGATGCTGATCTACCTCCTTCTGCGATAGAATCAA
Done.