genome.fa.s4131.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004131.1 Hibiscus syriacus cultivar Beakdansim tig00009037_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  101932

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11--101	7	12.7	7	90	9	148	71	0	28	0	0.86
1667--1789	39	3.2	39	69	11	117	35	13	12	39	1.81
1696--1880	39	4.9	36	67	10	93	34	15	10	39	1.82
1523--1968	77	5.9	76	86	3	587	33	14	11	40	1.82
1934--2620	39	17.7	39	86	3	920	31	15	15	37	1.89
1934--2620	118	5.9	117	85	3	913	31	15	15	37	1.89
2344--2405	19	3.2	19	65	13	54	33	17	16	32	1.92
1929--2620	157	4.5	157	86	3	961	31	15	15	37	1.89
10390--10427	20	1.9	20	88	0	58	23	28	15	31	1.96
21475--21510	18	1.9	19	88	5	56	69	13	8	8	1.36
23672--23731	9	7.5	8	78	17	63	71	0	0	28	0.86
23670--23731	12	5.3	12	76	16	60	72	0	0	27	0.85
23678--23726	3	17.3	3	80	19	61	69	0	0	30	0.89
24311--24929	84	7.5	84	81	4	691	24	19	26	29	1.98
24304--24925	164	3.8	164	80	4	651	24	19	26	30	1.98
24311--24925	248	2.5	248	91	0	987	24	19	26	30	1.98
25759--26922	110	10.6	110	94	0	1959	25	17	23	34	1.96
27449--27485	16	2.3	16	95	0	65	16	8	10	64	1.47
31734--31812	36	2.2	36	97	0	149	15	6	45	32	1.71
31935--31973	18	2.1	19	95	4	71	71	0	0	28	0.86
32549--32803	84	3.1	82	79	5	282	23	20	26	28	1.99
33242--33286	10	4.7	9	83	10	54	71	0	0	28	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33234--33285	16	3.2	16	79	12	54	75	0	0	25	0.81
33235--33280	19	2.6	17	86	13	58	73	0	0	26	0.83
34629--34670	22	2.0	22	86	9	61	52	0	4	42	1.22
38039--38078	2	20.0	2	100	0	80	50	0	0	50	1.00
39768--39893	50	2.5	51	83	2	166	16	34	28	19	1.94
42285--42324	18	2.2	18	100	0	80	20	22	32	25	1.98
43831--44163	111	3.0	111	96	0	603	44	10	8	36	1.69
44442--44566	50	2.5	50	81	0	151	20	28	34	16	1.95
46023--46075	22	2.4	22	96	0	97	28	5	26	39	1.79
46735--46799	28	2.3	28	97	0	121	29	23	12	35	1.91
50414--50467	24	2.2	25	83	3	65	31	1	5	61	1.30
63508--64012	104	4.8	104	91	1	785	38	17	22	21	1.93
63508--63980	209	2.3	209	92	0	786	37	18	21	21	1.94
63939--64436	136	3.7	134	81	6	529	36	17	20	25	1.94
66016--66069	24	2.2	25	83	3	65	31	1	5	61	1.30
68237--68278	20	2.1	20	86	8	59	33	23	9	33	1.87
70163--70222	2	30.0	2	100	0	120	50	0	0	50	1.00
76099--76123	13	1.9	13	100	0	50	24	4	8	64	1.38
83458--83508	24	2.0	25	85	14	68	37	1	1	58	1.20
83504--83554	20	2.5	20	90	0	75	19	19	19	41	1.91
83615--84275	244	2.7	244	90	0	1009	39	13	10	37	1.78
84492--84647	30	5.4	30	81	7	171	35	5	2	56	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84755--84787	2	17.0	2	93	6	59	51	0	0	48	1.00
85085--85154	35	2.0	35	88	5	106	42	17	5	34	1.73
85476--85585	54	2.0	54	96	0	202	45	1	12	40	1.53
85791--85916	63	2.0	63	89	3	191	45	16	5	32	1.71
87349--87434	28	3.0	29	86	10	131	23	20	12	43	1.86
93300--93393	29	3.2	29	83	3	107	14	22	15	46	1.83
93345--93410	30	2.3	30	82	7	75	15	27	9	48	1.74
93412--93479	28	2.4	28	92	0	109	14	26	17	41	1.88
94966--95013	24	2.0	23	88	4	69	29	0	2	68	1.01
95717--95780	23	2.9	23	74	6	60	57	1	1	39	1.17
96284--96327	19	2.3	19	84	0	52	52	6	4	36	1.49
96817--96855	12	3.4	12	86	10	55	71	2	7	17	1.21

Tables:   1

The End!