genome.fa.s4132.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004132.1 Hibiscus syriacus cultivar Beakdansim tig00009038_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72596

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15591--15687	51	1.9	51	100	0	194	22	11	36	29	1.89
20052--20122	19	3.7	19	96	0	133	30	29	16	22	1.96
20108--20214	56	1.9	56	84	5	144	28	20	20	29	1.98
25260--25315	2	28.5	2	96	3	105	48	0	0	51	1.00
25571--25689	52	2.3	52	89	0	175	21	24	19	34	1.96
27175--27224	10	5.0	10	92	4	66	4	8	0	88	0.64
27176--27240	28	2.3	29	84	5	89	4	12	0	83	0.80
27175--27255	9	8.7	9	78	11	83	3	14	0	81	0.82
27179--27255	13	5.6	14	72	18	63	3	14	0	81	0.82
27176--27255	28	2.9	26	77	14	79	3	15	0	81	0.83
27758--27800	8	5.5	8	77	5	52	0	18	0	81	0.69
30243--30405	58	2.8	57	79	4	166	36	5	23	34	1.78
30243--30365	57	2.1	57	83	5	158	36	4	25	33	1.77
30256--30405	57	2.6	57	80	8	151	37	6	23	33	1.79
30243--30405	29	5.7	29	79	4	150	36	5	23	34	1.78
35488--35514	13	2.1	13	100	0	54	14	14	29	40	1.86
37062--37127	29	2.3	29	86	0	87	33	7	24	34	1.84
40998--41029	2	16.0	2	93	0	55	50	3	0	46	1.17
41239--41289	21	2.4	22	80	6	61	23	23	17	35	1.95
41262--41390	41	3.2	41	83	5	147	30	19	20	30	1.97
41273--41389	20	5.8	20	88	5	157	32	18	20	28	1.96
41273--41389	61	1.9	59	86	3	162	32	18	20	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41253--41411	20	7.8	22	83	8	99	28	18	19	33	1.96
41946--42009	20	3.2	19	80	6	65	48	17	18	15	1.81
41957--42020	21	3.1	20	77	6	58	51	14	20	14	1.76
42040--42146	19	6.1	19	68	22	81	11	23	21	43	1.84
42062--42117	14	3.6	14	74	21	58	8	25	23	42	1.82
42045--42138	33	2.8	33	93	1	152	10	22	23	43	1.84
43830--44297	94	5.1	94	91	1	716	21	12	19	46	1.83
44388--44462	39	1.9	38	89	2	114	50	20	20	9	1.75
44388--44503	19	6.3	19	78	13	116	50	22	19	7	1.73
44388--44502	53	2.1	53	85	11	151	50	21	20	7	1.73
44509--44615	19	5.8	19	73	12	98	11	22	21	44	1.83
45062--45128	21	3.2	21	66	6	55	23	35	20	19	1.95
45040--45128	42	2.1	42	81	8	101	23	35	20	20	1.95
46479--46515	14	2.6	14	95	0	65	35	0	21	43	1.53
46620--46703	14	5.1	17	70	24	72	45	17	23	13	1.84
46620--46746	33	3.8	33	93	2	202	45	20	21	12	1.84
46620--46763	19	8.4	18	72	22	91	46	20	20	12	1.83
46685--46781	19	5.4	19	80	14	107	47	23	15	13	1.81
46776--46887	33	3.4	33	93	0	197	13	22	17	46	1.83
46796--46907	19	6.4	19	67	20	73	14	21	18	45	1.85
46860--46914	20	2.8	19	83	2	65	18	21	21	38	1.94
46881--46953	20	3.6	20	71	10	67	24	19	23	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49415--49458	22	2.0	22	86	0	61	27	27	25	20	1.99
49437--49740	149	2.0	149	98	0	581	35	19	17	27	1.94
51239--51283	21	2.1	21	87	0	63	15	24	28	31	1.96
54122--54421	147	2.0	147	93	3	516	35	20	16	28	1.94
55908--55952	21	2.1	21	87	0	63	15	24	28	31	1.96
58248--58365	20	5.8	20	92	2	164	35	18	22	22	1.96
59440--59532	2	46.5	2	100	0	186	49	0	0	50	1.00
66859--66883	13	1.9	13	100	0	50	76	8	0	16	1.02
71084--71145	20	3.2	19	82	13	65	20	25	16	37	1.93
71289--71343	20	2.8	20	81	13	60	30	16	21	30	1.95

Tables:   1

The End!